Wall clock time and date at job start Tue Mar 31 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47158 * 2 1 4 4 C 1.53001 * 109.47330 * 120.00440 * 2 1 3 5 5 C 1.52997 * 109.47107 * 64.99708 * 4 2 1 6 6 N 1.46497 * 109.47146 * 180.02562 * 5 4 2 7 7 C 1.46497 * 120.00025 * 270.00213 * 6 5 4 8 8 C 1.50698 * 109.47294 * 262.22599 * 7 6 5 9 9 H 1.08000 * 120.00115 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00322 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99567 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00241 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47156 * 89.99664 * 12 10 8 14 14 H 1.48495 * 109.47297 * 209.99455 * 12 10 8 15 15 H 1.48497 * 109.46978 * 329.99891 * 12 10 8 16 16 C 1.34769 * 119.99923 * 89.99997 * 6 5 4 17 17 O 1.21703 * 120.00276 * 1.94585 * 16 6 5 18 18 C 1.46589 * 120.00047 * 181.94388 * 16 6 5 19 19 C 1.36651 * 125.46005 * 172.14685 * 18 16 6 20 20 C 1.37463 * 113.29809 * 180.02562 * 19 18 16 21 21 C 1.33822 * 115.10375 * 359.97438 * 20 19 18 22 22 S 1.70622 * 110.95164 * 0.02562 * 21 20 19 23 23 H 1.08996 * 109.47082 * 59.99681 * 1 2 3 24 24 H 1.09003 * 109.46829 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46687 * 299.99504 * 1 2 3 26 26 H 1.09004 * 109.46905 * 240.00538 * 2 1 3 27 27 H 1.09004 * 109.47234 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47385 * 300.00133 * 3 2 1 29 29 H 1.09004 * 109.46773 * 60.00457 * 3 2 1 30 30 H 1.08997 * 109.46726 * 304.99950 * 4 2 1 31 31 H 1.09000 * 109.46977 * 185.00083 * 4 2 1 32 32 H 1.09009 * 109.46926 * 60.00123 * 5 4 2 33 33 H 1.08994 * 109.47697 * 300.00427 * 5 4 2 34 34 H 1.09006 * 109.47528 * 22.22801 * 7 6 5 35 35 H 1.09000 * 109.47474 * 142.22338 * 7 6 5 36 36 H 0.97001 * 119.99764 * 180.02562 * 11 10 8 37 37 H 1.08004 * 123.34668 * 0.26353 * 19 18 16 38 38 H 1.07998 * 122.45114 * 180.02562 * 20 19 18 39 39 H 1.07996 * 124.52155 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1878 6 7 2.1231 -2.8861 2.3842 7 6 3.4514 -3.5041 2.3828 8 6 3.3194 -4.9779 2.0973 9 1 2.3437 -5.4108 1.9329 10 6 4.4442 -5.7736 2.0460 11 7 5.6324 -5.2463 2.2457 12 14 4.2807 -7.6004 1.6914 13 1 4.3555 -7.8288 0.2259 14 1 5.3817 -8.3357 2.3638 15 1 2.9747 -8.0888 2.2024 16 6 1.3500 -2.9527 3.4861 17 8 0.2328 -2.4702 3.4757 18 6 1.8548 -3.6065 4.6971 19 6 1.2350 -3.6065 5.9150 20 6 1.9303 -4.2973 6.8789 21 6 3.0795 -4.8454 6.4668 22 16 3.3549 -4.5161 4.8155 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5137 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6055 -0.2619 2.1369 31 1 3.1264 -0.6444 1.2950 32 1 2.0699 -2.6550 0.3000 33 1 0.5490 -2.2725 1.1419 34 1 4.0679 -3.0388 1.6136 35 1 3.9187 -3.3632 3.3574 36 1 6.4237 -5.8061 2.2093 37 1 0.2909 -3.1159 6.1007 38 1 1.5747 -4.3916 7.8942 39 1 3.7439 -5.4195 7.0956 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264085372.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:38 Heat of formation + Delta-G solvation = -33.368012 kcal Electronic energy + Delta-G solvation = -20308.760554 eV Core-core repulsion = 17341.992086 eV Total energy + Delta-G solvation = -2966.768468 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.85919 -38.42441 -37.56504 -36.50102 -34.55378 -31.55740 -29.86929 -28.85433 -28.00151 -25.93685 -25.08033 -24.05505 -21.35142 -20.85618 -19.79929 -18.94405 -18.44431 -17.28896 -16.71271 -16.28885 -16.26305 -16.00929 -15.52810 -14.75913 -14.55649 -14.43257 -14.21484 -14.01958 -13.74954 -13.53205 -13.39130 -13.11920 -12.94783 -12.84044 -12.74806 -12.58882 -12.27357 -12.06793 -11.96009 -11.62757 -11.53711 -11.42622 -10.97849 -10.73969 -10.59948 -9.77161 -9.39501 -9.13595 -8.22978 -6.30552 -0.17705 0.98203 1.39656 1.46080 1.51783 1.53534 1.63282 2.23765 2.35942 2.44979 3.08972 3.76174 3.95386 3.99506 4.07532 4.29940 4.36308 4.54576 4.60767 4.68033 4.70747 4.72531 4.80055 4.85618 4.94572 5.02948 5.07473 5.12722 5.14428 5.21713 5.31983 5.44578 5.48002 5.51730 5.63242 5.66398 5.80042 5.92548 6.45217 6.73239 7.22201 7.34305 8.81022 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013971 B = 0.006949 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.624794 B = 4028.129659 C = 5393.692429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.141 4.141 4 C -0.118 4.118 5 C 0.117 3.883 6 N -0.598 5.598 7 C 0.236 3.764 8 C -0.543 4.543 9 H 0.051 0.949 10 C 0.050 3.950 11 N -0.896 5.896 12 Si 0.935 3.065 13 H -0.274 1.274 14 H -0.273 1.273 15 H -0.274 1.274 16 C 0.582 3.418 17 O -0.591 6.591 18 C -0.320 4.320 19 C -0.080 4.080 20 C -0.164 4.164 21 C -0.319 4.319 22 S 0.355 5.645 23 H 0.071 0.929 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.041 0.959 36 H 0.273 0.727 37 H 0.144 0.856 38 H 0.156 0.844 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.587 5.522 0.610 6.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C -0.199 4.199 4 C -0.157 4.157 5 C -0.005 4.005 6 N -0.326 5.326 7 C 0.113 3.887 8 C -0.584 4.584 9 H 0.069 0.931 10 C -0.154 4.154 11 N -0.533 5.533 12 Si 0.760 3.240 13 H -0.200 1.200 14 H -0.198 1.198 15 H -0.199 1.199 16 C 0.372 3.628 17 O -0.476 6.476 18 C -0.441 4.441 19 C -0.116 4.116 20 C -0.194 4.194 21 C -0.457 4.457 22 S 0.630 5.370 23 H 0.090 0.910 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.161 0.839 38 H 0.173 0.827 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.728 5.328 -0.364 5.613 hybrid contribution -1.045 -0.799 0.962 1.630 sum -2.773 4.529 0.598 5.344 Atomic orbital electron populations 1.21856 0.94977 1.01526 1.01884 1.21051 0.96132 0.96803 0.96936 1.21793 1.01013 0.94908 1.02154 1.21913 1.00702 0.94272 0.98779 1.21566 0.99789 0.92408 0.86735 1.48119 1.18360 1.53560 1.12608 1.19484 0.78927 0.92897 0.97379 1.21449 0.93524 0.93333 1.50123 0.93102 1.25323 0.94557 1.01670 0.93867 1.69956 0.98323 1.37493 1.47540 0.85891 0.78198 0.81140 0.78764 1.19959 1.19810 1.19885 1.17302 0.84149 0.78420 0.82922 1.90655 1.20613 1.51613 1.84737 1.24818 1.05980 1.14451 0.98885 1.20752 1.00572 0.99484 0.90767 1.19969 0.95914 1.02168 1.01357 1.26891 1.03577 1.07511 1.07721 1.86013 1.13993 1.40501 0.96515 0.91023 0.93471 0.93538 0.90360 0.92599 0.91116 0.93131 0.93515 0.92170 0.90110 0.91061 0.94038 0.94210 0.91726 0.83877 0.82668 0.80702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 8.95 71.98 0.64 -2.87 16 2 C -0.09 -2.24 2.92 -10.79 -0.03 -2.27 16 3 C -0.14 -2.96 9.19 71.98 0.66 -2.30 16 4 C -0.12 -3.76 5.01 30.59 0.15 -3.61 16 5 C 0.12 4.37 5.14 86.38 0.44 4.81 16 6 N -0.60 -26.13 2.48 -831.00 -2.06 -28.19 16 7 C 0.24 10.90 4.74 85.63 0.41 11.31 16 8 C -0.54 -26.63 6.94 25.60 0.18 -26.45 16 9 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 10 C 0.05 2.41 5.01 84.66 0.42 2.83 16 11 N -0.90 -44.28 13.29 21.45 0.28 -44.00 16 12 Si 0.93 39.18 29.54 68.60 2.03 41.20 16 13 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 14 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 15 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 16 C 0.58 26.88 7.56 86.42 0.65 27.53 16 17 O -0.59 -29.00 16.42 -4.36 -0.07 -29.07 16 18 C -0.32 -13.79 6.23 24.08 0.15 -13.64 16 19 C -0.08 -3.02 10.02 21.72 0.22 -2.80 16 20 C -0.16 -5.33 10.15 21.08 0.21 -5.11 16 21 C -0.32 -10.76 10.92 66.82 0.73 -10.03 16 22 S 0.35 14.53 15.85 -56.49 -0.90 13.64 16 23 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.05 1.24 6.57 -2.39 -0.02 1.23 16 25 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.08 2.89 8.07 -2.38 -0.02 2.87 16 33 H 0.07 2.73 5.82 -2.39 -0.01 2.72 16 34 H 0.04 1.98 8.01 -2.38 -0.02 1.96 16 35 H 0.04 1.92 4.50 -21.19 -0.10 1.82 16 36 H 0.27 12.82 8.31 -92.71 -0.77 12.05 16 37 H 0.14 5.08 8.06 -2.91 -0.02 5.05 16 38 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16 39 H 0.18 4.84 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -55.70 330.09 5.07 -50.63 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.94 Total: 18.40 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: 4.85 Total: -22.61 kcal Atomic # 7 Polarization: -70.41 SS G_CDS: -1.78 Total: -72.19 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.07 Total: -29.07 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.20 kcal Atomic # 16 Polarization: 14.53 SS G_CDS: -0.90 Total: 13.64 kcal Total: -55.70 5.07 -50.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264085372.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.264 kcal (2) G-P(sol) polarization free energy of solvation -55.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds