Wall clock time and date at job start Tue Mar 31 2020 05:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47355 * 2 1 4 4 C 1.52999 * 109.47336 * 239.99920 * 2 1 3 5 5 C 1.53006 * 109.47053 * 120.00320 * 2 1 3 6 6 N 1.46494 * 109.47376 * 64.95734 * 5 2 1 7 7 C 1.46507 * 119.99885 * 274.01041 * 6 5 2 8 8 C 1.50701 * 109.46921 * 262.21873 * 7 6 5 9 9 H 1.07997 * 119.99727 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99741 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99956 * 179.97438 * 10 8 7 12 12 Si 1.86809 * 120.00092 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47082 * 90.00070 * 12 10 8 14 14 H 1.48493 * 109.46729 * 209.99841 * 12 10 8 15 15 H 1.48497 * 109.46831 * 329.99919 * 12 10 8 16 16 C 1.34770 * 120.00330 * 94.00669 * 6 5 2 17 17 O 1.21709 * 119.99652 * 2.23420 * 16 6 5 18 18 C 1.46583 * 120.00385 * 182.23032 * 16 6 5 19 19 C 1.36643 * 125.45925 * 172.05957 * 18 16 6 20 20 C 1.37478 * 113.29871 * 180.02562 * 19 18 16 21 21 C 1.33818 * 115.09783 * 359.97438 * 20 19 18 22 22 S 1.70615 * 110.95644 * 0.02562 * 21 20 19 23 23 H 1.08997 * 109.46634 * 300.00011 * 1 2 3 24 24 H 1.09001 * 109.46613 * 60.00006 * 1 2 3 25 25 H 1.09000 * 109.47034 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46960 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47216 * 300.00388 * 3 2 1 28 28 H 1.08999 * 109.46804 * 60.00128 * 3 2 1 29 29 H 1.09000 * 109.46911 * 305.05001 * 4 2 1 30 30 H 1.08999 * 109.46834 * 65.04474 * 4 2 1 31 31 H 1.08998 * 109.47498 * 185.04737 * 4 2 1 32 32 H 1.09000 * 109.46751 * 304.95302 * 5 2 1 33 33 H 1.09003 * 109.47055 * 184.95878 * 5 2 1 34 34 H 1.08999 * 109.46923 * 22.22032 * 7 6 5 35 35 H 1.09000 * 109.47221 * 142.21337 * 7 6 5 36 36 H 0.96999 * 119.99934 * 179.97438 * 11 10 8 37 37 H 1.08003 * 123.35446 * 0.27042 * 19 18 16 38 38 H 1.08001 * 122.44930 * 180.02562 * 20 19 18 39 39 H 1.07995 * 124.51947 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 7 1.6516 -2.1327 1.1910 7 6 0.3366 -2.5514 1.6828 8 6 0.4706 -3.0798 3.0877 9 1 1.4385 -3.1019 3.5662 10 6 -0.6424 -3.5359 3.7617 11 7 -0.5254 -3.9976 4.9876 12 14 -2.3165 -3.4983 2.9336 13 1 -2.5389 -4.7750 2.2085 14 1 -3.3733 -3.3223 3.9617 15 1 -2.3678 -2.3676 1.9723 16 6 2.5039 -3.0459 0.6851 17 8 3.6117 -2.7045 0.3142 18 6 2.0968 -4.4502 0.5817 19 6 2.8031 -5.4360 -0.0481 20 6 2.1885 -6.6646 0.0059 21 6 1.0198 -6.6865 0.6573 22 16 0.6213 -5.1362 1.2480 23 1 -0.3632 0.5138 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6048 -1.7195 -1.2956 30 1 1.7524 -0.1579 -2.1369 31 1 3.1263 -0.8002 -1.2052 32 1 1.6060 -0.2613 2.1370 33 1 3.1264 -0.6451 1.2948 34 1 -0.3414 -1.6979 1.6786 35 1 -0.0607 -3.3340 1.0364 36 1 -1.3085 -4.3181 5.4618 37 1 3.7517 -5.2676 -0.5362 38 1 2.6180 -7.5476 -0.4438 39 1 0.4103 -7.5678 0.7913 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264303551.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:41 Heat of formation + Delta-G solvation = -6.943729 kcal Electronic energy + Delta-G solvation = -21102.357691 eV Core-core repulsion = 18136.735067 eV Total energy + Delta-G solvation = -2965.622625 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.61036 -37.28198 -36.22757 -34.61133 -32.55124 -29.40302 -28.44223 -27.04437 -26.92357 -25.99442 -23.73929 -22.62140 -20.27927 -18.45622 -18.33680 -17.33438 -17.12405 -15.68025 -15.11113 -15.03996 -14.62859 -14.27756 -13.96294 -13.49119 -13.30781 -12.99074 -12.72989 -12.40951 -12.21915 -12.09739 -11.98390 -11.92247 -11.53003 -11.39105 -11.25484 -11.15800 -10.84370 -10.65878 -10.51905 -10.31964 -10.29383 -9.80226 -9.39040 -9.22039 -8.97491 -8.19597 -7.81313 -7.60706 -6.40372 -4.36385 1.30541 2.40750 2.89870 3.03753 3.08247 3.12158 3.16926 3.77931 3.96896 4.08876 4.90435 5.07706 5.08514 5.22012 5.37941 5.62243 5.76507 5.79310 5.84467 5.95910 6.00961 6.06573 6.11169 6.13188 6.17755 6.21912 6.25249 6.35884 6.43396 6.47648 6.59567 6.64865 6.70709 6.88160 7.04593 7.18135 7.25952 8.00296 8.23475 8.66708 8.89107 9.15158 10.70838 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013633 B = 0.009725 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.302995 B = 2878.564341 C = 4251.681369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.136 4.136 4 C -0.133 4.133 5 C 0.130 3.870 6 N -0.587 5.587 7 C 0.194 3.806 8 C -0.535 4.535 9 H 0.087 0.913 10 C 0.090 3.910 11 N -0.872 5.872 12 Si 0.844 3.156 13 H -0.262 1.262 14 H -0.276 1.276 15 H -0.257 1.257 16 C 0.595 3.405 17 O -0.559 6.559 18 C -0.281 4.281 19 C -0.083 4.083 20 C -0.165 4.165 21 C -0.324 4.324 22 S 0.356 5.644 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.029 0.971 36 H 0.271 0.729 37 H 0.137 0.863 38 H 0.122 0.878 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.642 3.159 -9.082 9.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 C -0.193 4.193 4 C -0.191 4.191 5 C 0.007 3.993 6 N -0.316 5.316 7 C 0.070 3.930 8 C -0.577 4.577 9 H 0.105 0.895 10 C -0.117 4.117 11 N -0.508 5.508 12 Si 0.669 3.331 13 H -0.187 1.187 14 H -0.201 1.201 15 H -0.181 1.181 16 C 0.385 3.615 17 O -0.441 6.441 18 C -0.402 4.402 19 C -0.117 4.117 20 C -0.196 4.196 21 C -0.462 4.462 22 S 0.633 5.367 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.081 0.919 37 H 0.155 0.845 38 H 0.139 0.861 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.441 3.753 -8.286 9.210 hybrid contribution 0.161 -0.999 -0.928 1.373 sum -1.280 2.755 -9.214 9.702 Atomic orbital electron populations 1.22040 0.94755 1.02401 1.01129 1.20972 0.95907 0.95341 0.96474 1.21779 1.00984 0.95108 1.01464 1.21814 1.01772 0.99747 0.95753 1.21433 1.00835 0.80357 0.96652 1.47630 1.17238 1.06705 1.60000 1.20213 0.81444 0.96034 0.95325 1.21413 0.97494 1.42044 0.96764 0.89511 1.24802 0.98365 0.94026 0.94513 1.69860 1.30689 1.39524 1.10709 0.87274 0.85004 0.80249 0.80618 1.18727 1.20074 1.18126 1.16919 0.84025 0.83657 0.76945 1.90700 1.20837 1.80842 1.51755 1.24652 1.04553 0.98213 1.12815 1.20445 1.00230 0.91191 0.99854 1.19679 0.96749 0.97993 1.05196 1.26525 1.03429 1.09584 1.06613 1.85343 1.15866 0.92615 1.42922 0.92556 0.93278 0.91885 0.92611 0.92830 0.92634 0.93034 0.93716 0.91878 0.90347 0.90131 0.92545 0.95447 0.91906 0.84491 0.86053 0.83422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 7.36 37.16 0.27 -1.83 16 2 C -0.09 -1.27 0.85 -154.50 -0.13 -1.40 16 3 C -0.14 -1.65 8.47 37.16 0.31 -1.33 16 4 C -0.13 -2.07 7.24 37.16 0.27 -1.80 16 5 C 0.13 2.29 4.59 -4.04 -0.02 2.27 16 6 N -0.59 -11.90 1.98 -176.63 -0.35 -12.25 16 7 C 0.19 4.09 2.64 -5.19 -0.01 4.08 16 8 C -0.54 -13.19 7.53 -34.44 -0.26 -13.45 16 9 H 0.09 2.45 8.06 -52.49 -0.42 2.03 16 10 C 0.09 2.24 5.09 -17.82 -0.09 2.15 16 11 N -0.87 -23.66 13.96 55.43 0.77 -22.88 16 12 Si 0.84 18.11 26.79 -169.99 -4.55 13.56 16 13 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 14 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 15 H -0.26 -5.17 6.54 56.52 0.37 -4.81 16 16 C 0.60 12.88 6.05 -12.90 -0.08 12.80 16 17 O -0.56 -12.78 15.06 5.18 0.08 -12.71 16 18 C -0.28 -5.87 6.23 -36.79 -0.23 -6.10 16 19 C -0.08 -1.57 10.02 -40.43 -0.41 -1.97 16 20 C -0.16 -2.86 10.15 -41.41 -0.42 -3.28 16 21 C -0.32 -5.78 10.92 29.18 0.32 -5.46 16 22 S 0.36 7.23 15.23 -107.50 -1.64 5.59 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 1.01 5.72 -51.93 -0.30 0.71 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.89 6.85 -51.93 -0.36 0.53 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 1.05 7.41 -51.93 -0.38 0.67 16 32 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 33 H 0.08 1.46 7.27 -51.93 -0.38 1.09 16 34 H 0.06 1.15 4.95 -51.93 -0.26 0.89 16 35 H 0.03 0.60 3.92 -22.22 -0.09 0.51 16 36 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.14 2.43 8.06 -52.48 -0.42 2.01 16 38 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 39 H 0.15 2.28 8.06 -52.49 -0.42 1.85 16 LS Contribution 314.55 15.07 4.74 4.74 Total: -1.00 -27.20 314.55 -6.99 -34.19 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -5.58 Total: 5.07 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -0.47 Total: -15.32 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.42 Total: -35.13 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.08 Total: -12.71 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -4.55 Total: 13.56 kcal Atomic # 16 Polarization: 7.23 SS G_CDS: -1.64 Total: 5.59 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.20 -6.99 -34.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264303551.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.251 kcal (2) G-P(sol) polarization free energy of solvation -27.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds