Wall clock time and date at job start Tue Mar 31 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47355 * 2 1 4 4 C 1.52999 * 109.47336 * 239.99920 * 2 1 3 5 5 C 1.53006 * 109.47053 * 120.00320 * 2 1 3 6 6 N 1.46494 * 109.47376 * 64.95734 * 5 2 1 7 7 C 1.46507 * 119.99885 * 274.01041 * 6 5 2 8 8 C 1.50701 * 109.46921 * 262.21873 * 7 6 5 9 9 H 1.07997 * 119.99727 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99741 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99956 * 179.97438 * 10 8 7 12 12 Si 1.86809 * 120.00092 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47082 * 90.00070 * 12 10 8 14 14 H 1.48493 * 109.46729 * 209.99841 * 12 10 8 15 15 H 1.48497 * 109.46831 * 329.99919 * 12 10 8 16 16 C 1.34770 * 120.00330 * 94.00669 * 6 5 2 17 17 O 1.21709 * 119.99652 * 2.23420 * 16 6 5 18 18 C 1.46583 * 120.00385 * 182.23032 * 16 6 5 19 19 C 1.36643 * 125.45925 * 172.05957 * 18 16 6 20 20 C 1.37478 * 113.29871 * 180.02562 * 19 18 16 21 21 C 1.33818 * 115.09783 * 359.97438 * 20 19 18 22 22 S 1.70615 * 110.95644 * 0.02562 * 21 20 19 23 23 H 1.08997 * 109.46634 * 300.00011 * 1 2 3 24 24 H 1.09001 * 109.46613 * 60.00006 * 1 2 3 25 25 H 1.09000 * 109.47034 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46960 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47216 * 300.00388 * 3 2 1 28 28 H 1.08999 * 109.46804 * 60.00128 * 3 2 1 29 29 H 1.09000 * 109.46911 * 305.05001 * 4 2 1 30 30 H 1.08999 * 109.46834 * 65.04474 * 4 2 1 31 31 H 1.08998 * 109.47498 * 185.04737 * 4 2 1 32 32 H 1.09000 * 109.46751 * 304.95302 * 5 2 1 33 33 H 1.09003 * 109.47055 * 184.95878 * 5 2 1 34 34 H 1.08999 * 109.46923 * 22.22032 * 7 6 5 35 35 H 1.09000 * 109.47221 * 142.21337 * 7 6 5 36 36 H 0.96999 * 119.99934 * 179.97438 * 11 10 8 37 37 H 1.08003 * 123.35446 * 0.27042 * 19 18 16 38 38 H 1.08001 * 122.44930 * 180.02562 * 20 19 18 39 39 H 1.07995 * 124.51947 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 7 1.6516 -2.1327 1.1910 7 6 0.3366 -2.5514 1.6828 8 6 0.4706 -3.0798 3.0877 9 1 1.4385 -3.1019 3.5662 10 6 -0.6424 -3.5359 3.7617 11 7 -0.5254 -3.9976 4.9876 12 14 -2.3165 -3.4983 2.9336 13 1 -2.5389 -4.7750 2.2085 14 1 -3.3733 -3.3223 3.9617 15 1 -2.3678 -2.3676 1.9723 16 6 2.5039 -3.0459 0.6851 17 8 3.6117 -2.7045 0.3142 18 6 2.0968 -4.4502 0.5817 19 6 2.8031 -5.4360 -0.0481 20 6 2.1885 -6.6646 0.0059 21 6 1.0198 -6.6865 0.6573 22 16 0.6213 -5.1362 1.2480 23 1 -0.3632 0.5138 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6048 -1.7195 -1.2956 30 1 1.7524 -0.1579 -2.1369 31 1 3.1263 -0.8002 -1.2052 32 1 1.6060 -0.2613 2.1370 33 1 3.1264 -0.6451 1.2948 34 1 -0.3414 -1.6979 1.6786 35 1 -0.0607 -3.3340 1.0364 36 1 -1.3085 -4.3181 5.4618 37 1 3.7517 -5.2676 -0.5362 38 1 2.6180 -7.5476 -0.4438 39 1 0.4103 -7.5678 0.7913 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264303551.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:40 Heat of formation + Delta-G solvation = -21.540124 kcal Electronic energy + Delta-G solvation = -21102.990639 eV Core-core repulsion = 18136.735067 eV Total energy + Delta-G solvation = -2966.255572 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.17938 -38.71705 -37.68977 -36.24214 -34.38638 -30.92743 -30.15641 -28.18230 -28.12524 -27.44141 -25.28882 -24.35778 -21.77624 -19.88332 -19.71518 -19.20557 -18.76511 -17.25365 -16.67924 -16.61696 -16.12709 -15.84724 -15.24116 -14.93127 -14.73318 -14.58880 -14.37401 -13.94643 -13.60260 -13.51565 -13.39793 -13.17638 -12.95584 -12.81872 -12.58606 -12.53581 -12.36234 -12.10631 -11.89348 -11.77606 -11.59954 -11.54592 -10.95129 -10.90854 -10.79953 -9.76838 -9.37878 -9.20843 -8.32975 -6.33806 -0.23203 0.82684 1.36124 1.38801 1.41316 1.47522 1.59491 2.21402 2.29871 2.36116 3.01650 3.69982 3.87408 3.97177 4.04597 4.25860 4.48232 4.54273 4.57273 4.59281 4.67268 4.68801 4.80117 4.84202 4.90605 4.93529 5.04750 5.06869 5.15909 5.20169 5.30883 5.32924 5.39054 5.47575 5.51776 5.60548 5.69850 6.14006 6.50500 6.64409 7.17458 7.27568 8.82424 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013633 B = 0.009725 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.302995 B = 2878.564341 C = 4251.681369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 C -0.130 4.130 4 C -0.126 4.126 5 C 0.124 3.876 6 N -0.587 5.587 7 C 0.202 3.798 8 C -0.532 4.532 9 H 0.035 0.965 10 C 0.049 3.951 11 N -0.924 5.924 12 Si 0.891 3.109 13 H -0.246 1.246 14 H -0.278 1.278 15 H -0.233 1.233 16 C 0.587 3.413 17 O -0.582 6.582 18 C -0.309 4.309 19 C -0.077 4.077 20 C -0.160 4.160 21 C -0.307 4.307 22 S 0.308 5.692 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.028 0.972 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.040 0.960 36 H 0.272 0.728 37 H 0.147 0.853 38 H 0.160 0.840 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.843 3.108 -11.281 11.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 C -0.188 4.188 4 C -0.184 4.184 5 C 0.001 3.999 6 N -0.315 5.315 7 C 0.078 3.922 8 C -0.573 4.573 9 H 0.053 0.947 10 C -0.153 4.153 11 N -0.562 5.562 12 Si 0.713 3.287 13 H -0.170 1.170 14 H -0.203 1.203 15 H -0.156 1.156 16 C 0.378 3.622 17 O -0.466 6.466 18 C -0.430 4.430 19 C -0.112 4.112 20 C -0.191 4.191 21 C -0.444 4.444 22 S 0.583 5.417 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.165 0.835 38 H 0.177 0.823 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -2.641 3.739 -10.491 11.447 hybrid contribution 0.694 -1.087 -0.280 1.320 sum -1.948 2.652 -10.771 11.263 Atomic orbital electron populations 1.22020 0.93988 1.01618 1.02577 1.20944 0.96466 0.96473 0.94314 1.21742 1.00925 0.93183 1.02926 1.21736 1.00382 0.99031 0.97220 1.21640 1.00243 0.79442 0.98527 1.47695 1.16831 1.07661 1.59310 1.20092 0.82086 0.96612 0.93393 1.21309 0.95324 1.42399 0.98274 0.94677 1.25447 1.01925 0.93287 0.94690 1.69999 1.31863 1.41618 1.12690 0.86490 0.80088 0.81913 0.80236 1.16976 1.20313 1.15574 1.17159 0.83922 0.84314 0.76842 1.90668 1.21569 1.81326 1.53029 1.24754 1.05408 0.98365 1.14479 1.20800 1.00323 0.91522 0.98553 1.20023 0.96215 0.98444 1.04386 1.26716 1.03694 1.08725 1.05284 1.85272 1.16634 0.95037 1.44804 0.92052 0.90905 0.93713 0.92776 0.90808 0.91717 0.95251 0.91217 0.93677 0.90354 0.91408 0.91245 0.94305 0.91880 0.83491 0.82291 0.80475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 7.36 71.98 0.53 -3.32 16 2 C -0.08 -2.29 0.85 -52.18 -0.04 -2.33 16 3 C -0.13 -2.87 8.47 71.98 0.61 -2.26 16 4 C -0.13 -3.80 7.24 71.98 0.52 -3.28 16 5 C 0.12 4.41 4.59 86.38 0.40 4.80 16 6 N -0.59 -24.27 1.98 -830.96 -1.65 -25.92 16 7 C 0.20 8.57 2.64 85.63 0.23 8.79 16 8 C -0.53 -27.05 7.53 25.60 0.19 -26.86 16 9 H 0.03 2.11 8.06 -2.91 -0.02 2.08 16 10 C 0.05 2.48 5.09 84.65 0.43 2.91 16 11 N -0.92 -51.73 13.96 21.45 0.30 -51.43 16 12 Si 0.89 36.46 26.79 68.60 1.84 38.29 16 13 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 14 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 15 H -0.23 -8.54 6.54 99.48 0.65 -7.89 16 16 C 0.59 26.01 6.05 86.42 0.52 26.53 16 17 O -0.58 -27.30 15.06 -4.38 -0.07 -27.36 16 18 C -0.31 -12.93 6.23 24.08 0.15 -12.78 16 19 C -0.08 -2.80 10.02 21.72 0.22 -2.58 16 20 C -0.16 -5.06 10.15 21.08 0.21 -4.85 16 21 C -0.31 -10.11 10.92 66.81 0.73 -9.38 16 22 S 0.31 12.31 15.23 -56.49 -0.86 11.45 16 23 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.04 1.35 5.72 -2.39 -0.01 1.33 16 26 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.03 0.99 6.85 -2.39 -0.02 0.97 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.04 1.50 7.41 -2.39 -0.02 1.48 16 32 H 0.08 2.73 8.10 -2.39 -0.02 2.71 16 33 H 0.07 2.55 7.27 -2.39 -0.02 2.54 16 34 H 0.07 2.77 4.95 -2.39 -0.01 2.75 16 35 H 0.04 1.65 3.92 -21.28 -0.08 1.56 16 36 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 37 H 0.15 5.02 8.06 -2.91 -0.02 4.99 16 38 H 0.16 3.86 8.06 -2.91 -0.02 3.83 16 39 H 0.18 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -60.92 314.55 5.17 -55.76 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.90 Total: 23.82 kcal Atomic # 6 Polarization: -29.30 SS G_CDS: 4.70 Total: -24.60 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -1.35 Total: -77.35 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.07 Total: -27.36 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 1.84 Total: 38.29 kcal Atomic # 16 Polarization: 12.31 SS G_CDS: -0.86 Total: 11.45 kcal Total: -60.92 5.17 -55.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264303551.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.218 kcal (2) G-P(sol) polarization free energy of solvation -60.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds