Wall clock time and date at job start Tue Mar 31 2020 05:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00268 * 2 1 4 4 H 1.48507 * 109.47190 * 269.99505 * 3 2 1 5 5 H 1.48493 * 109.47442 * 29.99484 * 3 2 1 6 6 H 1.48497 * 109.47646 * 150.00128 * 3 2 1 7 7 C 1.37882 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99731 * 0.02562 * 7 2 1 9 9 C 1.50690 * 120.00275 * 180.02562 * 7 2 1 10 10 N 1.46905 * 109.47485 * 180.02562 * 9 7 2 11 11 C 1.47440 * 110.99868 * 75.12641 * 10 9 7 12 12 C 1.54320 * 107.23396 * 123.25859 * 11 10 9 13 13 C 1.55255 * 103.08292 * 22.20541 * 12 11 10 14 14 C 1.47842 * 111.00063 * 195.96877 * 10 9 7 15 15 H 1.08997 * 110.37493 * 332.58006 * 14 10 9 16 16 C 1.53007 * 110.37068 * 94.80868 * 14 10 9 17 17 C 1.53000 * 109.46920 * 294.41628 * 16 14 10 18 18 H 1.08997 * 109.47034 * 57.04450 * 17 16 14 19 19 O 1.42899 * 109.47057 * 297.04024 * 17 16 14 20 20 C 1.50700 * 109.46694 * 177.03996 * 17 16 14 21 21 C 1.33386 * 125.20403 * 264.99668 * 20 17 16 22 22 C 1.38422 * 114.92318 * 179.97438 * 21 20 17 23 23 C 1.33386 * 114.92049 * 0.02562 * 22 21 20 24 24 S 1.75879 * 125.20549 * 84.69889 * 20 17 16 25 25 H 0.96999 * 119.99847 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47466 * 60.00025 * 9 7 2 27 27 H 1.09007 * 109.47294 * 300.00325 * 9 7 2 28 28 H 1.08999 * 109.89201 * 242.66627 * 11 10 9 29 29 H 1.09003 * 109.89334 * 3.85563 * 11 10 9 30 30 H 1.09002 * 110.70498 * 140.66757 * 12 11 10 31 31 H 1.09004 * 110.70691 * 263.72528 * 12 11 10 32 32 H 1.09004 * 111.09060 * 206.38421 * 13 12 11 33 33 H 1.08998 * 110.94579 * 82.53216 * 13 12 11 34 34 H 1.09004 * 109.46985 * 174.41610 * 16 14 10 35 35 H 1.09001 * 109.47098 * 54.41600 * 16 14 10 36 36 H 0.96698 * 113.99987 * 299.99934 * 19 17 16 37 37 H 1.08003 * 122.53788 * 0.02562 * 21 20 17 38 38 H 1.08000 * 122.53643 * 180.02562 * 22 21 20 39 39 H 1.07999 * 125.20488 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 4.0012 -2.5792 0.0010 11 6 3.8447 -3.1948 -1.3296 12 6 5.2409 -3.6753 -1.7781 13 6 6.0119 -3.8149 -0.4377 14 6 5.4287 -2.6365 0.3813 15 1 5.9297 -1.7055 0.1162 16 6 5.5701 -2.9081 1.8804 17 6 5.0127 -1.7211 2.6685 18 1 3.9747 -1.5506 2.3829 19 8 5.7841 -0.5534 2.3800 20 6 5.0852 -2.0193 4.1439 21 6 4.0918 -2.5259 4.8758 22 6 4.3911 -2.7157 6.2139 23 6 5.6275 -2.3626 6.5688 24 16 6.4951 -1.7596 5.1628 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6802 0.8911 27 1 3.8752 -0.6805 -0.8889 28 1 3.1628 -4.0429 -1.2679 29 1 3.4613 -2.4586 -2.0361 30 1 5.1726 -4.6372 -2.2862 31 1 5.7154 -2.9341 -2.4213 32 1 7.0846 -3.6930 -0.5877 33 1 5.7921 -4.7694 0.0406 34 1 6.6229 -3.0459 2.1269 35 1 5.0151 -3.8096 2.1402 36 1 6.7201 -0.6338 2.6092 37 1 3.1272 -2.7704 4.4560 38 1 3.6776 -3.1190 6.9172 39 1 6.0349 -2.4393 7.5661 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267436426.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:58 Heat of formation + Delta-G solvation = -12.215260 kcal Electronic energy + Delta-G solvation = -20453.944234 eV Core-core repulsion = 17488.093018 eV Total energy + Delta-G solvation = -2965.851216 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.13609 -37.82086 -36.44329 -33.02277 -31.81844 -31.08673 -29.68252 -26.78358 -26.41128 -24.01012 -22.56379 -21.31344 -20.48634 -19.47503 -19.18399 -17.66568 -16.56490 -16.13566 -15.61068 -15.29586 -14.85529 -14.50351 -14.05178 -13.74983 -13.05801 -12.95279 -12.63854 -12.58405 -12.47039 -12.23468 -12.04696 -11.88325 -11.63935 -11.17612 -10.95383 -10.90727 -10.68839 -10.62767 -10.40031 -10.31074 -9.95688 -9.86303 -9.64745 -9.17449 -8.55276 -8.48101 -8.41703 -7.34805 -5.99614 -3.96308 1.05469 1.65230 2.02367 2.84083 3.34588 3.42781 3.51708 4.49614 4.59851 4.66533 4.77010 5.03727 5.06993 5.20706 5.31560 5.40322 5.48369 5.55270 5.60010 5.68911 5.76410 5.87525 6.01435 6.10111 6.15591 6.17547 6.22649 6.34333 6.44865 6.52890 6.58212 6.64074 6.69550 6.99402 7.01597 7.69029 7.78603 7.97904 8.05334 8.72320 9.10811 9.63522 11.13447 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013731 B = 0.006619 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.720067 B = 4229.415280 C = 5410.144236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.069 3.931 3 Si 0.865 3.135 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.257 1.257 7 C -0.506 4.506 8 H 0.079 0.921 9 C 0.148 3.852 10 N -0.513 5.513 11 C 0.054 3.946 12 C -0.144 4.144 13 C -0.123 4.123 14 C 0.070 3.930 15 H 0.054 0.946 16 C -0.121 4.121 17 C 0.166 3.834 18 H 0.145 0.855 19 O -0.544 6.544 20 C -0.188 4.188 21 C -0.137 4.137 22 C -0.127 4.127 23 C -0.222 4.222 24 S 0.079 5.921 25 H 0.262 0.738 26 H 0.045 0.955 27 H -0.017 1.017 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.361 0.639 37 H 0.147 0.853 38 H 0.139 0.861 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.920 -6.746 7.894 18.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.692 3.308 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.181 1.181 7 C -0.545 4.545 8 H 0.097 0.903 9 C 0.022 3.978 10 N -0.238 5.238 11 C -0.074 4.074 12 C -0.182 4.182 13 C -0.161 4.161 14 C -0.039 4.039 15 H 0.072 0.928 16 C -0.159 4.159 17 C 0.105 3.895 18 H 0.163 0.837 19 O -0.348 6.348 20 C -0.306 4.306 21 C -0.166 4.166 22 C -0.157 4.157 23 C -0.357 4.357 24 S 0.342 5.658 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.000 1.000 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.207 0.793 37 H 0.165 0.835 38 H 0.157 0.843 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 15.327 -6.112 7.833 18.266 hybrid contribution -0.163 0.645 -0.018 0.666 sum 15.165 -5.467 7.815 17.914 Atomic orbital electron populations 1.69898 1.06121 1.26706 1.51390 1.24876 0.94672 0.98736 0.94914 0.86992 0.81111 0.84219 0.78508 1.20555 1.21296 1.18146 1.21048 0.88864 0.94546 1.50006 0.90302 1.20603 0.96957 0.84340 0.95928 1.63431 1.13720 1.20986 1.25640 1.22658 0.94909 0.99326 0.90498 1.22846 0.97374 1.00934 0.97065 1.22722 0.98617 0.98899 0.95851 1.22482 0.90750 0.97039 0.93678 0.92812 1.22159 0.99971 0.98749 0.95061 1.20846 0.99143 0.85090 0.84444 0.83743 1.86776 1.23019 1.38282 1.86723 1.25697 0.96881 1.06909 1.01102 1.20227 1.00683 1.02450 0.93251 1.20215 0.96562 1.02620 0.96345 1.25497 0.98755 1.09520 1.01922 1.83953 1.16270 1.64848 1.00761 0.92799 0.93724 0.99980 0.91489 0.92301 0.91554 0.92162 0.91845 0.91043 0.92255 0.90026 0.79350 0.83525 0.84318 0.82186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.92 13.96 55.43 0.77 -27.14 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.86 22.10 27.47 -169.99 -4.67 17.43 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 6 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.51 -14.39 9.49 -34.44 -0.33 -14.72 16 8 H 0.08 2.45 8.06 -52.48 -0.42 2.02 16 9 C 0.15 3.58 2.79 -4.98 -0.01 3.57 16 10 N -0.51 -10.45 4.58 -224.81 -1.03 -11.48 16 11 C 0.05 1.01 6.51 -2.84 -0.02 1.00 16 12 C -0.14 -2.09 6.94 -24.85 -0.17 -2.26 16 13 C -0.12 -1.68 6.51 -24.53 -0.16 -1.84 16 14 C 0.07 1.15 2.45 -66.19 -0.16 0.99 16 15 H 0.05 0.95 7.39 -51.93 -0.38 0.57 16 16 C -0.12 -1.78 4.61 -26.73 -0.12 -1.91 16 17 C 0.17 2.74 2.62 -27.88 -0.07 2.67 16 18 H 0.15 2.96 5.83 -51.93 -0.30 2.66 16 19 O -0.54 -9.14 12.05 -35.23 -0.42 -9.56 16 20 C -0.19 -2.79 5.52 -36.00 -0.20 -2.99 16 21 C -0.14 -1.98 10.05 -41.21 -0.41 -2.39 16 22 C -0.13 -1.55 10.18 -41.21 -0.42 -1.97 16 23 C -0.22 -2.51 11.23 29.04 0.33 -2.18 16 24 S 0.08 0.96 22.54 -107.50 -2.42 -1.47 16 25 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 26 H 0.04 1.10 3.91 -51.93 -0.20 0.90 16 27 H -0.02 -0.44 7.22 -51.93 -0.37 -0.81 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.06 1.21 7.36 -51.93 -0.38 0.83 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.94 8.06 -51.93 -0.42 0.52 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.36 4.58 8.40 45.56 0.38 4.96 16 37 H 0.15 2.14 8.06 -52.48 -0.42 1.72 16 38 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 323.28 15.07 4.87 4.87 Total: -1.00 -31.56 323.28 -9.83 -41.39 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.08 Total: 6.07 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -1.85 Total: -20.10 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: -0.26 Total: -38.62 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.42 Total: -9.56 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.42 Total: -1.47 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.56 -9.83 -41.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267436426.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.173 kcal (2) G-P(sol) polarization free energy of solvation -31.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds