Wall clock time and date at job start Tue Mar 31 2020 05:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00166 * 2 1 4 4 H 1.48502 * 109.46967 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47132 * 300.00380 * 3 2 1 6 6 H 1.48498 * 109.47137 * 60.00159 * 3 2 1 7 7 C 1.37877 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99670 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00193 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47279 * 180.02562 * 9 7 2 11 11 C 1.48561 * 110.99707 * 289.23078 * 10 9 7 12 12 C 1.54380 * 104.59429 * 200.95986 * 11 10 9 13 13 C 1.54254 * 105.05892 * 23.85317 * 12 11 10 14 14 C 1.48555 * 111.00156 * 173.81164 * 10 9 7 15 15 H 1.09006 * 110.50808 * 40.20935 * 14 10 9 16 16 C 1.52997 * 110.41450 * 277.81733 * 14 10 9 17 17 C 1.52992 * 109.47369 * 178.40015 * 16 14 10 18 18 H 1.09007 * 109.47156 * 305.67912 * 17 16 14 19 19 O 1.42902 * 109.47349 * 65.67565 * 17 16 14 20 20 C 1.50704 * 109.47176 * 185.67675 * 17 16 14 21 21 C 1.33388 * 125.19833 * 100.00012 * 20 17 16 22 22 C 1.38426 * 114.91720 * 179.97438 * 21 20 17 23 23 C 1.33392 * 114.92174 * 359.97438 * 22 21 20 24 24 S 1.75883 * 125.20346 * 280.23759 * 20 17 16 25 25 H 0.97008 * 119.99723 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47456 * 59.99687 * 9 7 2 27 27 H 1.09000 * 109.46368 * 299.99856 * 9 7 2 28 28 H 1.09002 * 110.41460 * 82.18000 * 11 10 9 29 29 H 1.09000 * 110.51035 * 319.78977 * 11 10 9 30 30 H 1.09000 * 110.32514 * 264.95291 * 12 11 10 31 31 H 1.09001 * 110.32043 * 142.75106 * 12 11 10 32 32 H 1.09005 * 110.32417 * 241.10429 * 13 12 11 33 33 H 1.09001 * 110.32511 * 118.90000 * 13 12 11 34 34 H 1.08998 * 109.47149 * 58.39428 * 16 14 10 35 35 H 1.09008 * 109.47019 * 298.40055 * 16 14 10 36 36 H 0.96700 * 114.00044 * 60.00290 * 19 17 16 37 37 H 1.07997 * 122.54745 * 359.97438 * 21 20 17 38 38 H 1.08003 * 122.54186 * 180.02562 * 22 21 20 39 39 H 1.08003 * 125.20683 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2055 -3.6158 -0.0015 11 6 2.8996 -3.7229 -1.3105 12 6 3.4188 -5.1760 -1.3577 13 6 2.5002 -5.9612 -0.3990 14 6 1.5033 -4.9165 0.1469 15 1 0.5851 -4.9239 -0.4405 16 6 1.1952 -5.1916 1.6201 17 6 0.4380 -6.5151 1.7442 18 1 -0.4434 -6.4910 1.1033 19 8 1.2892 -7.5905 1.3429 20 6 0.0128 -6.7183 3.1757 21 6 -1.2078 -6.4774 3.6568 22 6 -1.3647 -6.7396 5.0069 23 6 -0.2717 -7.1940 5.6220 24 16 1.0516 -7.3037 4.4686 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5563 -0.8919 27 1 0.6240 -2.5574 0.8881 28 1 3.7316 -3.0203 -1.3584 29 1 2.2024 -3.5416 -2.1285 30 1 4.4520 -5.2203 -1.0132 31 1 3.3389 -5.5739 -2.3693 32 1 3.0825 -6.3908 0.4162 33 1 1.9694 -6.7446 -0.9399 34 1 0.5828 -4.3836 2.0202 35 1 2.1279 -5.2526 2.1811 36 1 2.0951 -7.6723 1.8711 37 1 -2.0126 -6.1059 3.0399 38 1 -2.3013 -6.5886 5.5230 39 1 -0.2077 -7.4505 6.6692 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267436427.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:01 Heat of formation + Delta-G solvation = -19.176461 kcal Electronic energy + Delta-G solvation = -19938.295904 eV Core-core repulsion = 16972.142828 eV Total energy + Delta-G solvation = -2966.153076 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.09884 -37.86283 -36.57357 -33.08062 -31.90720 -30.83314 -29.72378 -26.42527 -26.26865 -24.00912 -22.47220 -21.98768 -20.05882 -19.85207 -19.18815 -17.84780 -16.28600 -15.89836 -15.76499 -15.07563 -14.73840 -14.71314 -14.17807 -13.84385 -13.16915 -13.07105 -12.80449 -12.75879 -12.42775 -12.12169 -11.97677 -11.74061 -11.54630 -11.12990 -10.99265 -10.73592 -10.68080 -10.54406 -10.35332 -10.22815 -10.11065 -9.92586 -9.72754 -9.15352 -8.68926 -8.51892 -8.42754 -7.37406 -6.02324 -4.03125 0.92382 1.53840 1.91212 2.69005 3.31123 3.38472 3.43723 4.40636 4.43148 4.50463 4.93917 5.01357 5.16738 5.25193 5.33539 5.37958 5.45058 5.47173 5.52369 5.70948 5.83857 5.96349 6.02135 6.09600 6.22417 6.26337 6.28748 6.40376 6.48677 6.51996 6.63538 6.70136 6.74902 7.21971 7.32505 7.53316 7.80033 8.02028 8.20370 8.53423 9.05205 9.61274 11.08843 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017095 B = 0.004617 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.554529 B = 6063.011966 C = 7185.862562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.183 3.817 10 N -0.504 5.504 11 C 0.047 3.953 12 C -0.130 4.130 13 C -0.104 4.104 14 C 0.064 3.936 15 H 0.041 0.959 16 C -0.127 4.127 17 C 0.179 3.821 18 H 0.114 0.886 19 O -0.547 6.547 20 C -0.196 4.196 21 C -0.136 4.136 22 C -0.131 4.131 23 C -0.218 4.218 24 S 0.099 5.901 25 H 0.260 0.740 26 H -0.008 1.008 27 H 0.030 0.970 28 H 0.075 0.925 29 H 0.034 0.966 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.370 0.630 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.505 -16.187 6.759 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.543 4.543 8 H 0.081 0.919 9 C 0.057 3.943 10 N -0.228 5.228 11 C -0.081 4.081 12 C -0.169 4.169 13 C -0.142 4.142 14 C -0.045 4.045 15 H 0.059 0.941 16 C -0.165 4.165 17 C 0.117 3.883 18 H 0.132 0.868 19 O -0.352 6.352 20 C -0.314 4.314 21 C -0.166 4.166 22 C -0.161 4.161 23 C -0.354 4.354 24 S 0.362 5.638 25 H 0.070 0.930 26 H 0.009 0.991 27 H 0.048 0.952 28 H 0.093 0.907 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.217 0.783 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.760 -16.479 6.869 17.939 hybrid contribution -1.466 1.581 -0.128 2.160 sum 0.294 -14.898 6.740 16.354 Atomic orbital electron populations 1.69969 1.06059 1.26602 1.51313 1.24987 0.94851 0.99305 0.95499 0.86460 0.80126 0.83480 0.77482 1.19655 1.21129 1.21029 1.21178 0.93531 0.89913 1.49651 0.91931 1.19878 0.90377 0.88006 0.96057 1.65388 1.26900 1.01523 1.29025 1.22864 0.98658 0.95061 0.91549 1.22400 0.99539 0.96212 0.98720 1.22280 0.96784 0.96770 0.98397 1.22476 0.95929 0.91810 0.94282 0.94059 1.22171 1.00804 0.95959 0.97581 1.20466 0.93787 0.86858 0.87179 0.86800 1.86643 1.35770 1.52269 1.60559 1.25539 0.97750 1.07711 1.00399 1.20129 0.97218 1.03621 0.95676 1.20184 0.99540 1.02002 0.94409 1.25569 0.96462 1.10057 1.03271 1.84075 1.14587 1.65301 0.99876 0.93032 0.99057 0.95227 0.90683 0.94731 0.91933 0.92495 0.91870 0.91799 0.90208 0.90932 0.78317 0.84088 0.84302 0.82012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 7 C -0.50 -14.32 8.84 -34.44 -0.30 -14.62 16 8 H 0.06 1.77 7.68 -52.48 -0.40 1.37 16 9 C 0.18 4.78 4.52 -4.98 -0.02 4.76 16 10 N -0.50 -10.91 5.04 -223.57 -1.13 -12.04 16 11 C 0.05 0.93 5.99 -2.18 -0.01 0.91 16 12 C -0.13 -2.03 7.00 -25.35 -0.18 -2.21 16 13 C -0.10 -1.57 4.95 -25.35 -0.13 -1.69 16 14 C 0.06 1.14 2.32 -66.08 -0.15 0.99 16 15 H 0.04 0.78 8.00 -51.93 -0.42 0.36 16 16 C -0.13 -2.00 4.63 -26.74 -0.12 -2.12 16 17 C 0.18 2.35 3.39 -27.89 -0.09 2.26 16 18 H 0.11 1.50 8.12 -51.93 -0.42 1.08 16 19 O -0.55 -6.81 10.80 -35.23 -0.38 -7.19 16 20 C -0.20 -2.48 5.48 -36.00 -0.20 -2.67 16 21 C -0.14 -1.66 10.04 -41.21 -0.41 -2.07 16 22 C -0.13 -1.42 10.18 -41.21 -0.42 -1.84 16 23 C -0.22 -2.26 11.23 29.04 0.33 -1.93 16 24 S 0.10 1.09 22.65 -107.50 -2.43 -1.35 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H -0.01 -0.24 7.86 -51.93 -0.41 -0.64 16 27 H 0.03 0.82 7.21 -51.93 -0.37 0.45 16 28 H 0.07 1.52 8.01 -51.93 -0.42 1.11 16 29 H 0.03 0.71 7.81 -51.93 -0.41 0.30 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.87 6.78 -51.93 -0.35 0.52 16 33 H 0.06 0.91 7.94 -51.93 -0.41 0.50 16 34 H 0.08 1.44 7.27 -51.93 -0.38 1.06 16 35 H 0.07 1.14 8.05 -51.92 -0.42 0.72 16 36 H 0.37 3.79 8.04 45.56 0.37 4.15 16 37 H 0.14 1.57 8.06 -52.49 -0.42 1.14 16 38 H 0.14 1.21 8.06 -52.48 -0.42 0.78 16 39 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 328.19 15.07 4.95 4.95 Total: -1.00 -30.79 328.19 -10.38 -41.17 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.29 Total: 2.59 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -1.82 Total: -18.79 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: -0.39 Total: -38.18 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.38 Total: -7.19 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.43 Total: -1.35 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.79 -10.38 -41.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267436427.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.991 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds