Wall clock time and date at job start Tue Mar 31 2020 05:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00166 * 2 1 4 4 H 1.48502 * 109.46967 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47132 * 300.00380 * 3 2 1 6 6 H 1.48498 * 109.47137 * 60.00159 * 3 2 1 7 7 C 1.37877 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99670 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00193 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47279 * 180.02562 * 9 7 2 11 11 C 1.48561 * 110.99707 * 289.23078 * 10 9 7 12 12 C 1.54380 * 104.59429 * 200.95986 * 11 10 9 13 13 C 1.54254 * 105.05892 * 23.85317 * 12 11 10 14 14 C 1.48555 * 111.00156 * 173.81164 * 10 9 7 15 15 H 1.09006 * 110.50808 * 40.20935 * 14 10 9 16 16 C 1.52997 * 110.41450 * 277.81733 * 14 10 9 17 17 C 1.52992 * 109.47369 * 178.40015 * 16 14 10 18 18 H 1.09007 * 109.47156 * 305.67912 * 17 16 14 19 19 O 1.42902 * 109.47349 * 65.67565 * 17 16 14 20 20 C 1.50704 * 109.47176 * 185.67675 * 17 16 14 21 21 C 1.33388 * 125.19833 * 100.00012 * 20 17 16 22 22 C 1.38426 * 114.91720 * 179.97438 * 21 20 17 23 23 C 1.33392 * 114.92174 * 359.97438 * 22 21 20 24 24 S 1.75883 * 125.20346 * 280.23759 * 20 17 16 25 25 H 0.97008 * 119.99723 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47456 * 59.99687 * 9 7 2 27 27 H 1.09000 * 109.46368 * 299.99856 * 9 7 2 28 28 H 1.09002 * 110.41460 * 82.18000 * 11 10 9 29 29 H 1.09000 * 110.51035 * 319.78977 * 11 10 9 30 30 H 1.09000 * 110.32514 * 264.95291 * 12 11 10 31 31 H 1.09001 * 110.32043 * 142.75106 * 12 11 10 32 32 H 1.09005 * 110.32417 * 241.10429 * 13 12 11 33 33 H 1.09001 * 110.32511 * 118.90000 * 13 12 11 34 34 H 1.08998 * 109.47149 * 58.39428 * 16 14 10 35 35 H 1.09008 * 109.47019 * 298.40055 * 16 14 10 36 36 H 0.96700 * 114.00044 * 60.00290 * 19 17 16 37 37 H 1.07997 * 122.54745 * 359.97438 * 21 20 17 38 38 H 1.08003 * 122.54186 * 180.02562 * 22 21 20 39 39 H 1.08003 * 125.20683 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2055 -3.6158 -0.0015 11 6 2.8996 -3.7229 -1.3105 12 6 3.4188 -5.1760 -1.3577 13 6 2.5002 -5.9612 -0.3990 14 6 1.5033 -4.9165 0.1469 15 1 0.5851 -4.9239 -0.4405 16 6 1.1952 -5.1916 1.6201 17 6 0.4380 -6.5151 1.7442 18 1 -0.4434 -6.4910 1.1033 19 8 1.2892 -7.5905 1.3429 20 6 0.0128 -6.7183 3.1757 21 6 -1.2078 -6.4774 3.6568 22 6 -1.3647 -6.7396 5.0069 23 6 -0.2717 -7.1940 5.6220 24 16 1.0516 -7.3037 4.4686 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5563 -0.8919 27 1 0.6240 -2.5574 0.8881 28 1 3.7316 -3.0203 -1.3584 29 1 2.2024 -3.5416 -2.1285 30 1 4.4520 -5.2203 -1.0132 31 1 3.3389 -5.5739 -2.3693 32 1 3.0825 -6.3908 0.4162 33 1 1.9694 -6.7446 -0.9399 34 1 0.5828 -4.3836 2.0202 35 1 2.1279 -5.2526 2.1811 36 1 2.0951 -7.6723 1.8711 37 1 -2.0126 -6.1059 3.0399 38 1 -2.3013 -6.5886 5.5230 39 1 -0.2077 -7.4505 6.6692 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267436427.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:01 Heat of formation + Delta-G solvation = -39.709133 kcal Electronic energy + Delta-G solvation = -19939.186268 eV Core-core repulsion = 16972.142828 eV Total energy + Delta-G solvation = -2967.043439 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.40761 -39.00482 -37.63036 -35.16620 -33.08412 -32.62039 -30.81830 -28.29331 -27.60904 -25.12976 -24.29173 -23.14136 -21.60731 -21.15260 -20.24861 -18.82672 -18.40030 -17.19205 -16.89333 -16.54353 -16.12989 -15.94421 -15.75400 -15.15324 -14.57119 -14.50813 -14.29149 -13.90020 -13.74098 -13.53135 -13.27310 -13.00332 -12.90128 -12.83577 -12.48681 -12.38814 -12.23759 -11.96015 -11.85906 -11.68592 -11.51618 -11.31322 -11.27450 -11.00815 -10.63759 -9.61439 -9.37403 -9.18822 -8.23319 -6.33488 0.03331 0.66819 1.04707 1.38571 1.39027 1.53045 1.80587 2.38325 3.09160 3.21793 3.42530 3.69777 3.79048 3.98020 4.10656 4.16609 4.23854 4.36190 4.46554 4.54187 4.64912 4.65916 4.74901 4.86176 4.96687 5.02892 5.08270 5.15436 5.18776 5.22351 5.25400 5.35409 5.37458 5.46262 5.54204 5.64055 6.01647 6.26866 6.53529 6.63298 6.82893 7.36678 8.88379 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017095 B = 0.004617 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.554529 B = 6063.011966 C = 7185.862562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.201 3.799 10 N -0.513 5.513 11 C 0.041 3.959 12 C -0.119 4.119 13 C -0.093 4.093 14 C 0.059 3.941 15 H 0.024 0.976 16 C -0.115 4.115 17 C 0.194 3.806 18 H 0.109 0.891 19 O -0.547 6.547 20 C -0.222 4.222 21 C -0.146 4.146 22 C -0.145 4.145 23 C -0.213 4.213 24 S 0.110 5.890 25 H 0.264 0.736 26 H -0.042 1.042 27 H 0.003 0.997 28 H 0.064 0.936 29 H 0.017 0.983 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.381 0.619 37 H 0.142 0.858 38 H 0.160 0.840 39 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.886 -17.275 7.577 18.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.078 0.922 9 C 0.074 3.926 10 N -0.237 5.237 11 C -0.087 4.087 12 C -0.157 4.157 13 C -0.131 4.131 14 C -0.050 4.050 15 H 0.042 0.958 16 C -0.154 4.154 17 C 0.132 3.868 18 H 0.127 0.873 19 O -0.354 6.354 20 C -0.340 4.340 21 C -0.177 4.177 22 C -0.175 4.175 23 C -0.348 4.348 24 S 0.373 5.627 25 H 0.073 0.927 26 H -0.024 1.024 27 H 0.021 0.979 28 H 0.083 0.917 29 H 0.035 0.965 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.230 0.770 37 H 0.160 0.840 38 H 0.177 0.823 39 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 3.161 -17.593 7.688 19.458 hybrid contribution -1.925 1.882 -0.353 2.715 sum 1.236 -15.711 7.335 17.383 Atomic orbital electron populations 1.70096 1.07755 1.27839 1.51865 1.25925 0.95752 1.03237 0.94725 0.85329 0.78960 0.78497 0.77813 1.18749 1.20295 1.20256 1.21471 0.93529 0.91182 1.49972 0.92195 1.19478 0.90324 0.89614 0.93138 1.65319 1.26110 1.01978 1.30301 1.22927 0.97731 0.98145 0.89942 1.22370 1.00207 0.92795 1.00350 1.22251 0.96023 0.95906 0.98928 1.22622 0.95904 0.90846 0.95593 0.95802 1.22045 1.00721 0.96658 0.95959 1.20117 0.93257 0.85473 0.87941 0.87332 1.86621 1.36343 1.51499 1.60915 1.25497 0.98606 1.09340 1.00520 1.20398 0.97315 1.03288 0.96670 1.20417 1.00813 1.02366 0.93913 1.25987 0.95740 1.08725 1.04390 1.83961 1.14503 1.64830 0.99358 0.92673 1.02394 0.97908 0.91740 0.96490 0.90223 0.90235 0.89915 0.90327 0.93354 0.90590 0.77019 0.83993 0.82275 0.79300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.52 -30.63 8.84 25.60 0.23 -30.40 16 8 H 0.06 3.46 7.68 -2.91 -0.02 3.44 16 9 C 0.20 11.13 4.52 85.56 0.39 11.52 16 10 N -0.51 -22.88 5.04 -861.25 -4.34 -27.22 16 11 C 0.04 1.62 5.99 86.45 0.52 2.14 16 12 C -0.12 -3.45 7.00 31.49 0.22 -3.23 16 13 C -0.09 -2.61 4.95 31.49 0.16 -2.46 16 14 C 0.06 2.13 2.32 45.06 0.10 2.24 16 15 H 0.02 0.94 8.00 -2.38 -0.02 0.92 16 16 C -0.12 -3.72 4.63 30.59 0.14 -3.58 16 17 C 0.19 5.07 3.39 29.85 0.10 5.17 16 18 H 0.11 2.93 8.12 -2.38 -0.02 2.91 16 19 O -0.55 -12.67 10.80 -148.98 -1.61 -14.28 16 20 C -0.22 -5.50 5.48 24.59 0.13 -5.36 16 21 C -0.15 -3.52 10.04 21.22 0.21 -3.30 16 22 C -0.15 -2.94 10.18 21.22 0.22 -2.73 16 23 C -0.21 -3.95 11.23 66.72 0.75 -3.20 16 24 S 0.11 2.26 22.65 -56.49 -1.28 0.98 16 25 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 26 H -0.04 -2.51 7.86 -2.39 -0.02 -2.53 16 27 H 0.00 0.17 7.21 -2.39 -0.02 0.15 16 28 H 0.06 2.65 8.01 -2.39 -0.02 2.63 16 29 H 0.02 0.72 7.81 -2.39 -0.02 0.70 16 30 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.08 2.02 6.78 -2.38 -0.02 2.01 16 33 H 0.08 2.03 7.94 -2.39 -0.02 2.01 16 34 H 0.05 1.85 7.27 -2.39 -0.02 1.83 16 35 H 0.08 2.36 8.05 -2.38 -0.02 2.34 16 36 H 0.38 6.91 8.04 -74.06 -0.60 6.32 16 37 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 38 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 39 H 0.19 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -67.85 328.19 -0.85 -68.69 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.44 Total: 14.43 kcal Atomic # 6 Polarization: -36.28 SS G_CDS: 3.63 Total: -32.65 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -4.05 Total: -84.34 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -1.61 Total: -14.28 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.28 Total: 0.98 kcal Total: -67.85 -0.85 -68.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267436427.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.982 kcal (2) G-P(sol) polarization free energy of solvation -67.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds