Wall clock time and date at job start Tue Mar 31 2020 05:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47642 * 2 1 4 4 C 1.53003 * 109.47158 * 239.99660 * 2 1 3 5 5 C 1.50705 * 109.47265 * 119.99918 * 2 1 3 6 6 C 1.33821 * 124.51743 * 60.00019 * 5 2 1 7 7 C 1.37477 * 115.09603 * 180.02562 * 6 5 2 8 8 C 1.36644 * 113.29671 * 359.97438 * 7 6 5 9 9 C 1.46586 * 125.45416 * 179.97438 * 8 7 6 10 10 O 1.21695 * 120.00258 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99696 * 180.02562 * 9 8 7 12 12 C 1.46506 * 120.00072 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47289 * 180.02562 * 12 11 9 14 14 C 1.50696 * 109.47242 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99967 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00542 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99408 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00405 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47216 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47057 * 120.00167 * 18 16 14 21 21 H 1.48497 * 109.47025 * 240.00141 * 18 16 14 22 22 S 1.70615 * 124.52383 * 240.26818 * 5 2 1 23 23 H 1.09008 * 109.46890 * 299.99877 * 1 2 3 24 24 H 1.08996 * 109.47050 * 59.99653 * 1 2 3 25 25 H 1.08998 * 109.47308 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47432 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46751 * 300.00747 * 3 2 1 28 28 H 1.09003 * 109.46955 * 59.99636 * 3 2 1 29 29 H 1.08999 * 109.47129 * 300.00570 * 4 2 1 30 30 H 1.09005 * 109.46677 * 60.00229 * 4 2 1 31 31 H 1.08997 * 109.46915 * 179.97438 * 4 2 1 32 32 H 1.08003 * 122.45184 * 359.97438 * 6 5 2 33 33 H 1.07998 * 123.34575 * 180.02562 * 7 6 5 34 34 H 0.97001 * 120.00676 * 359.97438 * 11 9 8 35 35 H 1.09001 * 109.47060 * 300.00359 * 12 11 9 36 36 H 1.09004 * 109.47073 * 59.99848 * 12 11 9 37 37 H 1.09001 * 109.46832 * 299.99854 * 13 12 11 38 38 H 1.08996 * 109.46952 * 59.99873 * 13 12 11 39 39 H 0.96999 * 119.99910 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 1.7654 -1.9867 1.5314 7 6 2.3231 -2.4383 2.7040 8 6 3.0578 -1.4874 3.3544 9 6 3.7655 -1.6803 4.6235 10 8 3.7256 -2.7595 5.1845 11 7 4.4595 -0.6622 5.1696 12 6 5.1663 -0.8549 6.4383 13 6 5.8678 0.4460 6.8340 14 6 6.5954 0.2477 8.1387 15 1 6.5606 -0.7103 8.6361 16 6 7.3055 1.2891 8.6973 17 7 7.3474 2.4558 8.0918 18 14 8.2068 1.0434 10.3150 19 1 8.0036 -0.3493 10.7883 20 1 9.6574 1.2914 10.1160 21 1 7.6765 1.9927 11.3262 22 16 3.0120 0.0071 2.4291 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 -1.7490 -1.2492 30 1 1.6766 -0.2075 -2.1392 31 1 3.1300 -0.7209 -1.2494 32 1 1.1556 -2.6157 0.8997 33 1 2.1941 -3.4448 3.0737 34 1 4.4910 0.1981 4.7227 35 1 4.4522 -1.1326 7.2136 36 1 5.9063 -1.6473 6.3253 37 1 6.5818 0.7240 6.0588 38 1 5.1275 1.2380 6.9471 39 1 7.8466 3.1887 8.4850 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273071784.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:59 Heat of formation + Delta-G solvation = -36.179039 kcal Electronic energy + Delta-G solvation = -18979.393166 eV Core-core repulsion = 16012.502803 eV Total energy + Delta-G solvation = -2966.890363 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.43791 -38.67161 -36.02737 -34.83487 -32.86421 -30.20030 -28.72960 -27.75226 -27.59122 -25.49910 -24.20977 -21.49955 -20.75043 -20.61570 -18.78455 -17.59352 -16.40731 -16.01102 -15.49937 -15.04466 -14.80520 -14.63068 -14.46088 -14.28726 -13.70035 -13.35379 -13.04265 -12.86619 -12.75783 -12.30391 -12.24707 -12.12619 -12.01762 -11.57006 -11.30138 -11.27549 -11.21329 -11.05475 -10.72899 -10.62282 -10.36105 -9.90153 -9.54286 -9.23662 -8.78177 -8.62775 -8.51561 -8.34681 -6.09765 -4.12564 0.53498 1.43907 1.88279 2.41048 3.28476 3.35901 3.40822 3.49888 3.63551 4.20786 4.41927 4.50187 4.60115 4.92499 5.10594 5.23073 5.27421 5.27775 5.29803 5.41835 5.42080 5.52465 5.55510 5.62331 5.77232 5.86546 5.95246 6.00719 6.12905 6.31512 6.32894 6.36627 6.71060 6.84008 7.50459 7.60155 7.88114 7.93170 8.26366 8.55162 8.93424 9.52320 11.01941 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031561 B = 0.003181 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.955313 B = 8799.753892 C = 9485.039035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.001 3.999 3 C -0.156 4.156 4 C -0.136 4.136 5 C -0.190 4.190 6 C -0.151 4.151 7 C -0.061 4.061 8 C -0.263 4.263 9 C 0.580 3.420 10 O -0.540 6.540 11 N -0.717 5.717 12 C 0.122 3.878 13 C 0.011 3.989 14 C -0.521 4.521 15 H 0.060 0.940 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 S 0.210 5.790 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.140 0.860 33 H 0.150 0.850 34 H 0.394 0.606 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.155 -2.797 -19.880 24.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.001 4.001 3 C -0.213 4.213 4 C -0.194 4.194 5 C -0.309 4.309 6 C -0.182 4.182 7 C -0.094 4.094 8 C -0.383 4.383 9 C 0.365 3.635 10 O -0.420 6.420 11 N -0.366 5.366 12 C 0.000 4.000 13 C -0.026 4.026 14 C -0.559 4.559 15 H 0.079 0.921 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 S 0.480 5.520 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.157 0.843 33 H 0.168 0.832 34 H 0.228 0.772 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.438 -1.932 -19.189 22.949 hybrid contribution -0.101 -1.073 0.441 1.165 sum -12.539 -3.005 -18.748 22.754 Atomic orbital electron populations 1.21890 0.92989 1.02377 1.02175 1.19141 0.95906 0.94519 0.90529 1.22028 1.01781 0.94685 1.02852 1.21890 1.01528 1.00309 0.95696 1.24281 1.05377 0.99114 1.02148 1.19834 1.04647 0.95276 0.98486 1.20695 0.94915 1.00206 0.93539 1.24862 1.11243 0.99435 1.02778 1.17025 0.78853 0.84662 0.82961 1.90792 1.63041 1.25528 1.62623 1.46251 1.51226 1.13477 1.25673 1.21793 0.94839 1.01486 0.81878 1.19343 0.95466 0.90610 0.97184 1.21076 1.30971 0.97915 1.05976 0.92135 1.25000 0.96433 0.95100 0.97781 1.69967 1.41943 1.02166 1.39181 0.86449 0.79382 0.78367 0.83329 1.19573 1.20929 1.20924 1.83106 1.45477 1.11494 1.11945 0.92229 0.91982 0.92195 0.91799 0.91332 0.91810 0.92194 0.91991 0.92223 0.84279 0.83248 0.77189 0.92237 0.92231 0.95857 0.95856 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.33 37.16 0.31 -0.62 16 2 C 0.00 0.01 0.90 -155.66 -0.14 -0.13 16 3 C -0.16 -1.15 7.52 37.16 0.28 -0.87 16 4 C -0.14 -0.93 8.33 37.16 0.31 -0.62 16 5 C -0.19 -1.94 4.97 -35.86 -0.18 -2.12 16 6 C -0.15 -1.61 9.18 -41.41 -0.38 -1.99 16 7 C -0.06 -0.80 10.01 -40.43 -0.40 -1.20 16 8 C -0.26 -3.94 6.45 -36.79 -0.24 -4.17 16 9 C 0.58 10.84 7.78 -12.90 -0.10 10.74 16 10 O -0.54 -11.83 16.84 5.19 0.09 -11.74 16 11 N -0.72 -13.46 5.55 -61.64 -0.34 -13.81 16 12 C 0.12 2.67 5.61 -4.04 -0.02 2.64 16 13 C 0.01 0.29 5.09 -27.89 -0.14 0.14 16 14 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 15 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 18 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 S 0.21 2.48 20.43 -107.50 -2.20 0.28 16 23 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.40 7.86 -51.93 -0.41 -0.01 16 26 H 0.06 0.49 7.91 -51.93 -0.41 0.08 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.49 7.90 -51.93 -0.41 0.08 16 29 H 0.06 0.40 7.86 -51.93 -0.41 -0.01 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.14 1.17 7.90 -52.48 -0.41 0.76 16 33 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 34 H 0.39 6.61 7.59 -40.82 -0.31 6.30 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 340.10 15.07 5.13 5.13 Total: -1.00 -31.47 340.10 -8.86 -40.33 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.13 Total: 0.29 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -1.12 Total: -11.49 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.39 Total: -39.22 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -2.20 Total: 0.28 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.47 -8.86 -40.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273071784.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.149 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds