Wall clock time and date at job start Tue Mar 31 2020 05:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38267 * 119.94843 * 2 1 4 4 C 1.38250 * 120.12767 * 179.97438 * 3 2 1 5 5 C 1.38338 * 120.03013 * 0.04595 * 4 3 2 6 6 F 1.35100 * 120.04992 * 180.25798 * 5 4 3 7 7 C 1.38915 * 119.89989 * 359.97437 * 5 4 3 8 8 O 1.35958 * 120.05920 * 180.02562 * 7 5 4 9 9 C 1.42893 * 116.99849 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.47063 * 180.02562 * 9 8 7 11 11 O 1.21277 * 120.00235 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00063 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00031 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46905 * 180.02562 * 13 12 10 15 15 C 1.50706 * 109.46786 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00210 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99862 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00150 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99958 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47255 * 90.00195 * 19 17 15 21 21 H 1.48502 * 109.47094 * 209.99836 * 19 17 15 22 22 H 1.48500 * 109.47204 * 329.99556 * 19 17 15 23 23 C 1.38177 * 119.95723 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47192 * 269.97286 * 1 2 3 25 25 H 1.08999 * 109.47384 * 29.97991 * 1 2 3 26 26 H 1.09004 * 109.46808 * 149.97741 * 1 2 3 27 27 H 1.08000 * 119.93535 * 359.97438 * 3 2 1 28 28 H 1.08000 * 119.99054 * 180.02562 * 4 3 2 29 29 H 1.08997 * 109.47429 * 300.00272 * 9 8 7 30 30 H 1.09004 * 109.47080 * 60.00777 * 9 8 7 31 31 H 0.97000 * 119.99934 * 0.02562 * 12 10 9 32 32 H 1.08997 * 109.47311 * 300.00472 * 13 12 10 33 33 H 1.09004 * 109.46479 * 60.00537 * 13 12 10 34 34 H 1.08997 * 109.47465 * 300.00308 * 14 13 12 35 35 H 1.09004 * 109.47171 * 60.00891 * 14 13 12 36 36 H 0.97001 * 120.00234 * 179.97438 * 18 17 15 37 37 H 1.08005 * 120.01400 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1981 0.0000 4 6 3.5798 1.2024 0.0005 5 6 4.2758 0.0069 0.0001 6 9 5.6268 0.0106 0.0059 7 6 3.5836 -1.1975 -0.0003 8 8 4.2644 -2.3743 -0.0002 9 6 3.4871 -3.5734 -0.0012 10 6 4.4062 -4.7677 -0.0003 11 8 5.6083 -4.6078 0.0016 12 7 3.8921 -6.0136 -0.0016 13 6 4.7855 -7.1747 -0.0012 14 6 3.9533 -8.4585 -0.0035 15 6 4.8724 -9.6529 -0.0025 16 1 5.9430 -9.5105 -0.0001 17 6 4.3465 -10.9274 -0.0048 18 7 5.1485 -11.9697 -0.0044 19 14 2.4948 -11.1738 -0.0097 20 1 2.0077 -11.2381 -1.4110 21 1 2.1622 -12.4415 0.6886 22 1 1.8424 -10.0377 0.6895 23 6 2.1970 -1.1972 -0.0005 24 1 -0.3634 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6554 2.1323 -0.0004 28 1 4.1167 2.1395 0.0010 29 1 2.8576 -3.5991 0.8882 30 1 2.8591 -3.5985 -0.8918 31 1 2.9306 -6.1415 -0.0034 32 1 5.4154 -7.1488 -0.8904 33 1 5.4133 -7.1497 0.8896 34 1 3.3232 -8.4847 0.8855 35 1 3.3259 -8.4832 -0.8945 36 1 4.7785 -12.8664 -0.0056 37 1 1.6565 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273082926.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:39 Heat of formation + Delta-G solvation = -103.402821 kcal Electronic energy + Delta-G solvation = -20660.660711 eV Core-core repulsion = 17124.642130 eV Total energy + Delta-G solvation = -3536.018581 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.90553 -40.56889 -39.28063 -37.75901 -35.07381 -32.90677 -32.75003 -30.93824 -30.38141 -28.58005 -26.86206 -24.80679 -23.04896 -21.98393 -20.90146 -20.39210 -18.48355 -17.48267 -17.24540 -16.90473 -16.72322 -16.40719 -15.61225 -15.28074 -14.79884 -14.64210 -14.60284 -14.21751 -14.00557 -13.88528 -13.54029 -13.29243 -13.01043 -12.63942 -12.36481 -12.17353 -11.96655 -11.55287 -11.52037 -11.32680 -11.19630 -10.46125 -10.34618 -10.01720 -9.62107 -9.35759 -9.20415 -8.73198 -8.62910 -8.44333 -6.14620 -4.15320 0.74719 0.90445 2.42221 2.70496 3.17577 3.21687 3.28820 3.30415 3.62811 3.98643 4.27550 4.33714 4.36161 4.57890 4.73126 4.77842 4.82401 4.83237 5.06802 5.17744 5.17940 5.20729 5.40997 5.61227 5.69643 5.83216 6.00427 6.07946 6.13101 6.29551 6.48546 6.59244 6.93871 7.06801 7.16274 7.61065 7.71909 8.35384 8.42191 8.89711 9.44878 10.98394 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029074 B = 0.002870 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.827051 B = 9753.929042 C =10685.703511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.057 4.057 3 C -0.133 4.133 4 C -0.112 4.112 5 C 0.065 3.935 6 F -0.129 7.129 7 C 0.105 3.895 8 O -0.279 6.279 9 C 0.039 3.961 10 C 0.508 3.492 11 O -0.520 6.520 12 N -0.721 5.721 13 C 0.131 3.869 14 C -0.021 4.021 15 C -0.525 4.525 16 H 0.076 0.924 17 C 0.069 3.931 18 N -0.897 5.897 19 Si 0.883 3.117 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.266 1.266 23 C -0.187 4.187 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.133 0.867 28 H 0.143 0.857 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.397 0.603 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.023 0.977 35 H 0.018 0.982 36 H 0.265 0.735 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.039 26.463 0.043 29.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.057 4.057 3 C -0.151 4.151 4 C -0.131 4.131 5 C 0.046 3.954 6 F -0.108 7.108 7 C 0.058 3.942 8 O -0.191 6.191 9 C -0.040 4.040 10 C 0.291 3.709 11 O -0.395 6.395 12 N -0.374 5.374 13 C 0.009 3.991 14 C -0.059 4.059 15 C -0.563 4.563 16 H 0.094 0.906 17 C -0.133 4.133 18 N -0.535 5.535 19 Si 0.710 3.290 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.191 1.191 23 C -0.206 4.206 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.151 0.849 28 H 0.160 0.840 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.231 0.769 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.041 0.959 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.859 26.310 0.045 28.859 hybrid contribution -1.372 -0.495 -0.017 1.459 sum -13.231 25.815 0.028 29.009 Atomic orbital electron populations 1.20826 0.90371 1.03249 1.02796 1.19775 0.96509 0.92218 0.97182 1.20803 0.92926 0.98057 1.03354 1.21012 0.94858 0.96320 1.00885 1.17005 0.77455 0.91691 1.09296 1.91535 1.27934 1.97169 1.94157 1.19088 0.91054 0.85501 0.98568 1.86257 1.33729 1.11008 1.88116 1.22625 0.94181 0.83354 1.03815 1.19871 0.89033 0.83938 0.78062 1.90764 1.15052 1.85658 1.48012 1.46176 1.11027 1.05574 1.74582 1.21584 0.92606 0.82899 1.01971 1.19799 0.96545 0.92667 0.96898 1.20908 0.94751 0.88781 1.51866 0.90562 1.25007 0.98047 0.95892 0.94338 1.69900 1.35009 0.98407 1.50213 0.86742 0.85968 0.77791 0.78494 1.20209 1.21243 1.19104 1.21070 0.91645 0.99695 1.08185 0.90650 0.91080 0.91174 0.84867 0.83965 0.88851 0.88846 0.76931 0.91671 0.91643 0.95918 0.96352 0.92489 0.84335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.54 10.01 36.01 0.36 -0.18 16 2 C -0.06 -0.42 5.88 -104.63 -0.62 -1.03 16 3 C -0.13 -0.95 9.69 -39.57 -0.38 -1.34 16 4 C -0.11 -0.97 10.02 -39.54 -0.40 -1.37 16 5 C 0.07 0.79 7.31 -39.29 -0.29 0.50 16 6 F -0.13 -1.86 17.11 2.25 0.04 -1.82 16 7 C 0.10 1.27 6.69 -39.18 -0.26 1.00 16 8 O -0.28 -4.08 9.53 -39.52 -0.38 -4.46 16 9 C 0.04 0.45 5.22 36.00 0.19 0.63 16 10 C 0.51 8.19 7.91 -10.99 -0.09 8.10 16 11 O -0.52 -11.05 16.50 -14.35 -0.24 -11.29 16 12 N -0.72 -11.15 5.56 -60.29 -0.33 -11.48 16 13 C 0.13 2.60 5.61 -4.04 -0.02 2.58 16 14 C -0.02 -0.47 4.16 -27.88 -0.12 -0.59 16 15 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 16 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 19 Si 0.88 20.61 27.47 -169.99 -4.67 15.94 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -5.81 6.54 56.52 0.37 -5.44 16 23 C -0.19 -1.66 8.69 -39.45 -0.34 -2.01 16 24 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 26 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 27 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 28 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 29 H 0.09 0.79 7.66 -51.93 -0.40 0.39 16 30 H 0.09 0.79 7.66 -51.93 -0.40 0.39 16 31 H 0.40 4.72 8.47 -40.82 -0.35 4.37 16 32 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 35 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 36 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.14 0.92 6.30 -52.48 -0.33 0.59 16 LS Contribution 325.08 15.07 4.90 4.90 Total: -1.00 -34.75 325.08 -7.08 -41.83 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -4.78 Total: -0.65 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -2.39 Total: -6.66 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.44 Total: -37.79 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.61 Total: -15.75 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.75 -7.08 -41.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273082926.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.570 kcal (2) G-P(sol) polarization free energy of solvation -34.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds