Wall clock time and date at job start Tue Mar 31 2020 05:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38267 * 119.94843 * 2 1 4 4 C 1.38250 * 120.12767 * 179.97438 * 3 2 1 5 5 C 1.38338 * 120.03013 * 0.04595 * 4 3 2 6 6 F 1.35100 * 120.04992 * 180.25798 * 5 4 3 7 7 C 1.38915 * 119.89989 * 359.97437 * 5 4 3 8 8 O 1.35958 * 120.05920 * 180.02562 * 7 5 4 9 9 C 1.42893 * 116.99849 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.47063 * 180.02562 * 9 8 7 11 11 O 1.21277 * 120.00235 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00063 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00031 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46905 * 180.02562 * 13 12 10 15 15 C 1.50706 * 109.46786 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00210 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99862 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00150 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99958 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47255 * 90.00195 * 19 17 15 21 21 H 1.48502 * 109.47094 * 209.99836 * 19 17 15 22 22 H 1.48500 * 109.47204 * 329.99556 * 19 17 15 23 23 C 1.38177 * 119.95723 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47192 * 269.97286 * 1 2 3 25 25 H 1.08999 * 109.47384 * 29.97991 * 1 2 3 26 26 H 1.09004 * 109.46808 * 149.97741 * 1 2 3 27 27 H 1.08000 * 119.93535 * 359.97438 * 3 2 1 28 28 H 1.08000 * 119.99054 * 180.02562 * 4 3 2 29 29 H 1.08997 * 109.47429 * 300.00272 * 9 8 7 30 30 H 1.09004 * 109.47080 * 60.00777 * 9 8 7 31 31 H 0.97000 * 119.99934 * 0.02562 * 12 10 9 32 32 H 1.08997 * 109.47311 * 300.00472 * 13 12 10 33 33 H 1.09004 * 109.46479 * 60.00537 * 13 12 10 34 34 H 1.08997 * 109.47465 * 300.00308 * 14 13 12 35 35 H 1.09004 * 109.47171 * 60.00891 * 14 13 12 36 36 H 0.97001 * 120.00234 * 179.97438 * 18 17 15 37 37 H 1.08005 * 120.01400 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1981 0.0000 4 6 3.5798 1.2024 0.0005 5 6 4.2758 0.0069 0.0001 6 9 5.6268 0.0106 0.0059 7 6 3.5836 -1.1975 -0.0003 8 8 4.2644 -2.3743 -0.0002 9 6 3.4871 -3.5734 -0.0012 10 6 4.4062 -4.7677 -0.0003 11 8 5.6083 -4.6078 0.0016 12 7 3.8921 -6.0136 -0.0016 13 6 4.7855 -7.1747 -0.0012 14 6 3.9533 -8.4585 -0.0035 15 6 4.8724 -9.6529 -0.0025 16 1 5.9430 -9.5105 -0.0001 17 6 4.3465 -10.9274 -0.0048 18 7 5.1485 -11.9697 -0.0044 19 14 2.4948 -11.1738 -0.0097 20 1 2.0077 -11.2381 -1.4110 21 1 2.1622 -12.4415 0.6886 22 1 1.8424 -10.0377 0.6895 23 6 2.1970 -1.1972 -0.0005 24 1 -0.3634 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6554 2.1323 -0.0004 28 1 4.1167 2.1395 0.0010 29 1 2.8576 -3.5991 0.8882 30 1 2.8591 -3.5985 -0.8918 31 1 2.9306 -6.1415 -0.0034 32 1 5.4154 -7.1488 -0.8904 33 1 5.4133 -7.1497 0.8896 34 1 3.3232 -8.4847 0.8855 35 1 3.3259 -8.4832 -0.8945 36 1 4.7785 -12.8664 -0.0056 37 1 1.6565 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273082926.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:39 Heat of formation + Delta-G solvation = -127.402429 kcal Electronic energy + Delta-G solvation = -20661.701412 eV Core-core repulsion = 17124.642130 eV Total energy + Delta-G solvation = -3537.059282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.83438 -41.47481 -40.42474 -38.60151 -36.68588 -34.84329 -33.34735 -32.40442 -31.34403 -29.66448 -27.48756 -26.48004 -23.87546 -22.67665 -22.64672 -21.68706 -19.35342 -18.96831 -18.47272 -18.03111 -17.66069 -17.42985 -16.66841 -16.60502 -16.21175 -15.96435 -15.48657 -15.26758 -15.09917 -14.86452 -14.60647 -14.34219 -14.23573 -13.89825 -13.36321 -13.10560 -12.86756 -12.83825 -12.55006 -12.27103 -12.17857 -12.10428 -11.94552 -11.75279 -11.53002 -10.99228 -10.78983 -10.16670 -9.84231 -9.18637 -8.29954 -6.38137 0.08825 0.23691 1.40070 1.43398 1.44917 1.45405 1.54612 2.37652 2.53734 2.56802 3.05252 3.26066 3.51019 3.76758 3.83097 3.95582 4.05336 4.16004 4.25627 4.32315 4.39795 4.49223 4.72644 4.74239 4.91066 4.92827 5.00913 5.07976 5.20106 5.31737 5.37018 5.39691 5.51989 5.61336 5.69290 6.18210 6.21393 6.51118 6.70301 7.16324 7.26573 8.87063 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029074 B = 0.002870 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.827051 B = 9753.929042 C =10685.703511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.052 4.052 3 C -0.127 4.127 4 C -0.110 4.110 5 C 0.020 3.980 6 F -0.156 7.156 7 C 0.080 3.920 8 O -0.322 6.322 9 C 0.047 3.953 10 C 0.504 3.496 11 O -0.582 6.582 12 N -0.705 5.705 13 C 0.144 3.856 14 C -0.011 4.011 15 C -0.543 4.543 16 H 0.025 0.975 17 C 0.001 3.999 18 N -0.953 5.953 19 Si 0.963 3.037 20 H -0.264 1.264 21 H -0.289 1.289 22 H -0.231 1.231 23 C -0.186 4.186 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.166 0.834 28 H 0.159 0.841 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.420 0.580 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.042 0.958 35 H 0.040 0.960 36 H 0.268 0.732 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.266 28.442 0.046 33.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.053 4.053 3 C -0.145 4.145 4 C -0.129 4.129 5 C 0.001 3.999 6 F -0.135 7.135 7 C 0.034 3.966 8 O -0.235 6.235 9 C -0.031 4.031 10 C 0.291 3.709 11 O -0.461 6.461 12 N -0.358 5.358 13 C 0.020 3.980 14 C -0.049 4.049 15 C -0.581 4.581 16 H 0.044 0.956 17 C -0.196 4.196 18 N -0.593 5.593 19 Si 0.785 3.215 20 H -0.189 1.189 21 H -0.215 1.215 22 H -0.154 1.154 23 C -0.204 4.204 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.184 0.816 28 H 0.177 0.823 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.258 0.742 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -17.139 28.327 0.049 33.108 hybrid contribution 0.307 -1.037 -0.020 1.082 sum -16.832 27.290 0.029 32.064 Atomic orbital electron populations 1.20914 0.87902 1.04509 1.03809 1.20226 0.98202 0.91687 0.95165 1.21251 0.92206 0.99592 1.01456 1.21299 0.95794 0.95813 0.99964 1.17615 0.76707 0.93393 1.12214 1.91452 1.29992 1.97376 1.94719 1.19350 0.92376 0.84413 1.00419 1.86178 1.35875 1.12413 1.89041 1.22704 0.92634 0.80348 1.07371 1.20777 0.88933 0.85121 0.76095 1.90742 1.18125 1.86569 1.50696 1.45816 1.11637 1.04316 1.74066 1.21078 0.92695 0.84145 1.00041 1.19652 0.95860 0.90900 0.98477 1.21276 0.93588 0.91492 1.51756 0.95642 1.26151 1.04661 0.95176 0.93576 1.70087 1.38072 0.99190 1.51913 0.85487 0.78031 0.78641 0.79379 1.18924 1.21487 1.15400 1.21382 0.90183 1.01553 1.07292 0.89567 0.89634 0.90240 0.81639 0.82297 0.85042 0.85017 0.74184 0.93841 0.93834 0.94001 0.94145 0.92327 0.81770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.51 10.01 71.24 0.71 0.20 16 2 C -0.05 -0.58 5.88 -19.87 -0.12 -0.69 16 3 C -0.13 -1.39 9.69 22.28 0.22 -1.18 16 4 C -0.11 -1.77 10.02 22.30 0.22 -1.55 16 5 C 0.02 0.50 7.31 22.46 0.16 0.66 16 6 F -0.16 -4.85 17.11 44.97 0.77 -4.08 16 7 C 0.08 1.88 6.69 22.53 0.15 2.03 16 8 O -0.32 -9.35 9.53 -74.03 -0.71 -10.06 16 9 C 0.05 0.96 5.22 71.23 0.37 1.33 16 10 C 0.50 15.93 7.91 87.66 0.69 16.62 16 11 O -0.58 -25.75 16.50 16.02 0.26 -25.49 16 12 N -0.70 -20.51 5.56 -463.06 -2.57 -23.08 16 13 C 0.14 5.77 5.61 86.38 0.48 6.26 16 14 C -0.01 -0.48 4.16 29.85 0.12 -0.35 16 15 C -0.54 -30.74 9.66 25.60 0.25 -30.50 16 16 H 0.03 1.63 7.99 -2.91 -0.02 1.61 16 17 C 0.00 0.07 5.47 84.66 0.46 0.53 16 18 N -0.95 -59.33 13.96 21.45 0.30 -59.03 16 19 Si 0.96 41.17 27.47 68.60 1.88 43.05 16 20 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 21 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.23 -8.54 6.54 99.48 0.65 -7.89 16 23 C -0.19 -2.71 8.69 22.35 0.19 -2.52 16 24 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 25 H 0.08 0.18 8.08 -2.39 -0.02 0.16 16 26 H 0.08 0.25 8.08 -2.38 -0.02 0.24 16 27 H 0.17 0.72 8.06 -2.91 -0.02 0.69 16 28 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 29 H 0.13 1.67 7.66 -2.39 -0.02 1.65 16 30 H 0.13 1.67 7.66 -2.39 -0.02 1.65 16 31 H 0.42 8.31 8.47 -92.71 -0.79 7.53 16 32 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.04 1.65 7.20 -2.39 -0.02 1.64 16 35 H 0.04 1.58 7.57 -2.39 -0.02 1.56 16 36 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 37 H 0.16 1.38 6.30 -2.91 -0.02 1.37 16 Total: -1.00 -82.98 325.08 4.12 -78.86 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 0.25 Total: 8.99 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 3.93 Total: -9.16 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -2.27 Total: -82.12 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -0.44 Total: -35.55 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.77 Total: -4.08 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 1.88 Total: 43.05 kcal Total: -82.98 4.12 -78.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273082926.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.546 kcal (2) G-P(sol) polarization free energy of solvation -82.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds