Wall clock time and date at job start Tue Mar 31 2020 05:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47555 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00199 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99750 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99928 * 180.27479 * 12 11 10 15 15 C 1.52996 * 109.47159 * 179.72352 * 14 12 11 16 16 H 1.09009 * 109.46866 * 305.00034 * 15 14 12 17 17 O 1.42902 * 109.47328 * 64.99682 * 15 14 12 18 18 C 1.50695 * 109.47485 * 184.99752 * 15 14 12 19 19 C 1.38261 * 119.98925 * 279.73283 * 18 15 14 20 20 C 1.38221 * 120.05331 * 179.72414 * 19 18 15 21 21 C 1.38221 * 120.02506 * 0.54286 * 20 19 18 22 22 C 1.38436 * 119.97166 * 359.72555 * 21 20 19 23 23 F 1.35102 * 120.02473 * 180.02562 * 22 21 20 24 24 C 1.38177 * 119.98596 * 99.99651 * 18 15 14 25 25 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 27 27 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 28 28 H 1.08998 * 109.47382 * 59.99730 * 10 9 7 29 29 H 1.09002 * 109.47216 * 300.00167 * 10 9 7 30 30 H 0.97000 * 119.99484 * 359.97438 * 11 10 9 31 31 H 1.09004 * 109.46965 * 299.72211 * 14 12 11 32 32 H 1.08994 * 109.46990 * 59.72065 * 14 12 11 33 33 H 0.96695 * 113.99802 * 59.99777 * 17 15 14 34 34 H 1.08000 * 119.97295 * 359.96454 * 19 18 15 35 35 H 1.08000 * 119.98871 * 180.27024 * 20 19 18 36 36 H 1.07997 * 120.01188 * 179.70633 * 21 20 19 37 37 H 1.08006 * 120.01441 * 0.02562 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0216 -2.6365 -0.0014 11 7 5.4866 -2.6366 -0.0002 12 6 6.1605 -3.8038 -0.0016 13 8 5.5540 -4.8541 -0.0035 14 6 7.6675 -3.8038 0.0058 15 6 8.1774 -5.2462 0.0094 16 1 7.7386 -5.7847 0.8495 17 8 7.8054 -5.8861 -1.2130 18 6 9.6787 -5.2481 0.1406 19 6 10.4696 -5.0131 -0.9688 20 6 11.8466 -5.0088 -0.8488 21 6 12.4347 -5.2506 0.3785 22 6 11.6438 -5.4915 1.4889 23 9 12.2175 -5.7274 2.6891 24 6 10.2643 -5.4899 1.3686 25 1 -0.4849 0.8400 0.0004 26 1 3.8745 -0.6808 0.8905 27 1 3.8752 -0.6796 -0.8895 28 1 3.6586 -3.1494 -0.8920 29 1 3.6579 -3.1514 0.8879 30 1 5.9715 -1.7965 0.0009 31 1 8.0352 -3.2906 -0.8827 32 1 8.0263 -3.2893 0.8972 33 1 8.1614 -5.4595 -2.0044 34 1 10.0111 -4.8289 -1.9291 35 1 12.4634 -4.8208 -1.7152 36 1 13.5107 -5.2519 0.4710 37 1 9.6463 -5.6781 2.2342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273126054.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:38 Heat of formation + Delta-G solvation = -120.078021 kcal Electronic energy + Delta-G solvation = -20719.310202 eV Core-core repulsion = 17182.568530 eV Total energy + Delta-G solvation = -3536.741672 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.24853 -40.23892 -39.09377 -36.91147 -34.93866 -32.85604 -32.50014 -30.99990 -30.61698 -29.47731 -25.59719 -24.12463 -23.22656 -21.61848 -20.80965 -20.14642 -18.34800 -17.07029 -16.94169 -16.68502 -16.58035 -16.20159 -15.94284 -15.67804 -15.07000 -14.64439 -14.37134 -14.18770 -13.99086 -13.56636 -13.36876 -13.18286 -12.73102 -12.58847 -12.32518 -11.99771 -11.92464 -11.50495 -11.28826 -11.20099 -10.46521 -10.40834 -10.27149 -9.98493 -9.57884 -9.39600 -9.28347 -9.08184 -8.65782 -8.53505 -6.12615 -4.12850 0.68685 0.75860 2.92397 3.08687 3.23278 3.30867 3.32133 3.48332 3.82069 4.21041 4.23320 4.35809 4.35844 4.55958 4.59052 4.72963 4.86925 4.94611 5.18450 5.20148 5.35194 5.38174 5.46810 5.61963 5.68820 5.85686 6.07031 6.10252 6.19419 6.43745 6.54463 6.74513 7.11905 7.21237 7.42695 7.65133 7.88467 8.42084 8.57276 8.91991 9.47362 11.00485 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030130 B = 0.002768 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.069859 B =10112.891110 C =10391.262518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.524 4.524 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.130 3.870 11 N -0.729 5.729 12 C 0.505 3.495 13 O -0.531 6.531 14 C -0.172 4.172 15 C 0.165 3.835 16 H 0.118 0.882 17 O -0.533 6.533 18 C -0.085 4.085 19 C -0.123 4.123 20 C -0.087 4.087 21 C -0.156 4.156 22 C 0.101 3.899 23 F -0.139 7.139 24 C -0.143 4.143 25 H 0.265 0.735 26 H 0.021 0.979 27 H 0.017 0.983 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.395 0.605 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.367 0.633 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.211 -7.356 -1.006 28.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.008 3.992 11 N -0.380 5.380 12 C 0.290 3.710 13 O -0.407 6.407 14 C -0.213 4.213 15 C 0.105 3.895 16 H 0.136 0.864 17 O -0.338 6.338 18 C -0.086 4.086 19 C -0.141 4.141 20 C -0.105 4.105 21 C -0.175 4.175 22 C 0.082 3.918 23 F -0.118 7.118 24 C -0.162 4.162 25 H 0.075 0.925 26 H 0.039 0.961 27 H 0.035 0.965 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.228 0.772 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.214 0.786 34 H 0.147 0.853 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 26.277 -8.416 -0.545 27.597 hybrid contribution 1.069 1.839 -0.095 2.129 sum 27.346 -6.577 -0.640 28.133 Atomic orbital electron populations 1.69904 1.06297 1.27063 1.50383 1.25009 0.94770 0.99158 0.94379 0.86745 0.80241 0.83544 0.78480 1.20232 1.21263 1.19117 1.20929 0.88686 0.94908 1.51668 0.90614 1.19787 0.98002 0.91390 0.96753 1.21495 0.76069 1.00039 1.01607 1.46340 1.09170 1.07830 1.74638 1.20294 0.89204 0.84312 0.77206 1.90745 1.70045 1.31054 1.48856 1.22454 0.94501 0.99015 1.05321 1.20538 0.87107 0.92052 0.89754 0.86447 1.86814 1.76247 1.56061 1.14633 1.20524 0.97138 0.97848 0.93042 1.20993 0.93723 1.00794 0.98593 1.20996 0.94732 0.97829 0.96918 1.21192 1.00636 1.03419 0.92245 1.17695 0.91338 1.01775 0.81036 1.91516 1.85014 1.91927 1.43319 1.21034 0.93059 1.03111 0.98961 0.92533 0.96051 0.96499 0.91978 0.92003 0.77217 0.88546 0.87976 0.78572 0.85261 0.84763 0.84703 0.84323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 7 C -0.52 -14.61 9.66 -34.44 -0.33 -14.94 16 8 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 9 C -0.02 -0.49 4.15 -27.89 -0.12 -0.60 16 10 C 0.13 2.62 5.61 -4.04 -0.02 2.60 16 11 N -0.73 -11.38 5.56 -60.29 -0.33 -11.72 16 12 C 0.51 7.63 7.71 -10.98 -0.08 7.54 16 13 O -0.53 -10.40 15.42 -8.85 -0.14 -10.53 16 14 C -0.17 -1.67 5.36 -27.88 -0.15 -1.82 16 15 C 0.17 1.68 2.75 -27.89 -0.08 1.61 16 16 H 0.12 1.37 7.82 -51.92 -0.41 0.96 16 17 O -0.53 -6.19 12.42 -49.64 -0.62 -6.81 16 18 C -0.08 -0.72 4.97 -104.64 -0.52 -1.24 16 19 C -0.12 -0.83 9.32 -39.58 -0.37 -1.20 16 20 C -0.09 -0.54 10.04 -39.59 -0.40 -0.93 16 21 C -0.16 -1.12 10.03 -39.51 -0.40 -1.52 16 22 C 0.10 0.90 7.30 -39.42 -0.29 0.61 16 23 F -0.14 -1.38 17.27 2.25 0.04 -1.34 16 24 C -0.14 -1.25 9.65 -39.51 -0.38 -1.63 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 27 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 28 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.39 5.01 8.47 -40.82 -0.35 4.66 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.37 2.73 7.49 45.56 0.34 3.07 16 34 H 0.13 0.59 6.77 -52.49 -0.36 0.24 16 35 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 36 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 37 H 0.14 1.09 8.04 -52.48 -0.42 0.67 16 LS Contribution 323.23 15.07 4.87 4.87 Total: -1.00 -34.50 323.23 -7.38 -41.88 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -4.08 Total: 3.63 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -3.23 Total: -9.67 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.44 Total: -38.22 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.75 Total: -17.34 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.50 -7.38 -41.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273126054.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.196 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds