Wall clock time and date at job start Tue Mar 31 2020 05:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47555 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00199 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99750 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99928 * 180.27479 * 12 11 10 15 15 C 1.52996 * 109.47159 * 179.72352 * 14 12 11 16 16 H 1.09009 * 109.46866 * 305.00034 * 15 14 12 17 17 O 1.42902 * 109.47328 * 64.99682 * 15 14 12 18 18 C 1.50695 * 109.47485 * 184.99752 * 15 14 12 19 19 C 1.38261 * 119.98925 * 279.73283 * 18 15 14 20 20 C 1.38221 * 120.05331 * 179.72414 * 19 18 15 21 21 C 1.38221 * 120.02506 * 0.54286 * 20 19 18 22 22 C 1.38436 * 119.97166 * 359.72555 * 21 20 19 23 23 F 1.35102 * 120.02473 * 180.02562 * 22 21 20 24 24 C 1.38177 * 119.98596 * 99.99651 * 18 15 14 25 25 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 27 27 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 28 28 H 1.08998 * 109.47382 * 59.99730 * 10 9 7 29 29 H 1.09002 * 109.47216 * 300.00167 * 10 9 7 30 30 H 0.97000 * 119.99484 * 359.97438 * 11 10 9 31 31 H 1.09004 * 109.46965 * 299.72211 * 14 12 11 32 32 H 1.08994 * 109.46990 * 59.72065 * 14 12 11 33 33 H 0.96695 * 113.99802 * 59.99777 * 17 15 14 34 34 H 1.08000 * 119.97295 * 359.96454 * 19 18 15 35 35 H 1.08000 * 119.98871 * 180.27024 * 20 19 18 36 36 H 1.07997 * 120.01188 * 179.70633 * 21 20 19 37 37 H 1.08006 * 120.01441 * 0.02562 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0216 -2.6365 -0.0014 11 7 5.4866 -2.6366 -0.0002 12 6 6.1605 -3.8038 -0.0016 13 8 5.5540 -4.8541 -0.0035 14 6 7.6675 -3.8038 0.0058 15 6 8.1774 -5.2462 0.0094 16 1 7.7386 -5.7847 0.8495 17 8 7.8054 -5.8861 -1.2130 18 6 9.6787 -5.2481 0.1406 19 6 10.4696 -5.0131 -0.9688 20 6 11.8466 -5.0088 -0.8488 21 6 12.4347 -5.2506 0.3785 22 6 11.6438 -5.4915 1.4889 23 9 12.2175 -5.7274 2.6891 24 6 10.2643 -5.4899 1.3686 25 1 -0.4849 0.8400 0.0004 26 1 3.8745 -0.6808 0.8905 27 1 3.8752 -0.6796 -0.8895 28 1 3.6586 -3.1494 -0.8920 29 1 3.6579 -3.1514 0.8879 30 1 5.9715 -1.7965 0.0009 31 1 8.0352 -3.2906 -0.8827 32 1 8.0263 -3.2893 0.8972 33 1 8.1614 -5.4595 -2.0044 34 1 10.0111 -4.8289 -1.9291 35 1 12.4634 -4.8208 -1.7152 36 1 13.5107 -5.2519 0.4710 37 1 9.6463 -5.6781 2.2342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273126054.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:38 Heat of formation + Delta-G solvation = -145.283652 kcal Electronic energy + Delta-G solvation = -20720.403200 eV Core-core repulsion = 17182.568530 eV Total energy + Delta-G solvation = -3537.834670 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.91730 -41.11367 -40.07477 -37.73940 -36.52552 -34.77744 -33.29689 -32.22354 -31.43505 -30.56439 -27.05917 -25.29746 -23.76770 -22.70545 -22.25919 -21.36235 -19.13304 -18.95274 -17.91531 -17.47469 -17.30028 -17.08515 -16.72994 -16.61128 -16.27483 -16.23009 -15.75230 -15.15891 -14.80276 -14.75638 -14.61322 -14.41701 -14.01306 -13.40209 -13.33055 -13.11450 -12.87188 -12.63829 -12.61700 -12.19633 -12.14032 -11.96728 -11.75749 -11.51790 -11.21717 -10.79043 -10.78552 -10.00235 -9.96641 -9.67660 -8.30144 -6.37794 0.12401 0.21179 1.39222 1.42400 1.53593 1.73865 2.26795 2.37120 2.59371 3.04947 3.17034 3.50504 3.59131 3.73783 3.82686 4.05578 4.11207 4.20512 4.29931 4.39956 4.44024 4.47919 4.65568 4.75639 4.75771 4.88570 5.07991 5.15020 5.18666 5.35124 5.41211 5.45547 5.47872 5.66644 5.90346 6.22341 6.65797 6.72865 6.84328 7.26860 7.38317 8.86874 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030130 B = 0.002768 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.069859 B =10112.891110 C =10391.262518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.235 1.235 7 C -0.542 4.542 8 H 0.026 0.974 9 C -0.012 4.012 10 C 0.144 3.856 11 N -0.719 5.719 12 C 0.502 3.498 13 O -0.582 6.582 14 C -0.157 4.157 15 C 0.169 3.831 16 H 0.091 0.909 17 O -0.559 6.559 18 C -0.090 4.090 19 C -0.119 4.119 20 C -0.082 4.082 21 C -0.156 4.156 22 C 0.077 3.923 23 F -0.152 7.152 24 C -0.156 4.156 25 H 0.268 0.732 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.040 0.960 29 H 0.039 0.961 30 H 0.414 0.586 31 H 0.133 0.867 32 H 0.127 0.873 33 H 0.385 0.615 34 H 0.156 0.844 35 H 0.166 0.834 36 H 0.152 0.848 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.946 -5.305 -2.146 31.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.158 1.158 7 C -0.580 4.580 8 H 0.044 0.956 9 C -0.049 4.049 10 C 0.020 3.980 11 N -0.372 5.372 12 C 0.290 3.710 13 O -0.461 6.461 14 C -0.196 4.196 15 C 0.109 3.891 16 H 0.109 0.891 17 O -0.366 6.366 18 C -0.090 4.090 19 C -0.137 4.137 20 C -0.100 4.100 21 C -0.174 4.174 22 C 0.058 3.942 23 F -0.130 7.130 24 C -0.175 4.175 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.251 0.749 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.234 0.766 34 H 0.173 0.827 35 H 0.183 0.817 36 H 0.169 0.831 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 30.068 -6.358 -1.690 30.779 hybrid contribution -0.143 1.072 0.229 1.106 sum 29.925 -5.285 -1.460 30.423 Atomic orbital electron populations 1.70084 1.08678 1.28464 1.51979 1.26130 0.95714 1.04019 0.93627 0.85502 0.79655 0.77084 0.79386 1.18854 1.21377 1.15806 1.21290 0.91802 0.93292 1.51611 0.95572 1.19639 0.94247 0.92966 0.98082 1.20970 0.79161 0.98237 0.99607 1.46091 1.07050 1.09330 1.74681 1.21263 0.91451 0.83001 0.75264 1.90733 1.71634 1.32868 1.50899 1.22442 0.89529 0.99438 1.08212 1.20363 0.88236 0.91820 0.88646 0.89102 1.86779 1.76944 1.57098 1.15814 1.20304 0.95933 0.99256 0.93552 1.21334 0.94027 0.99360 0.98950 1.21370 0.94806 0.96463 0.97378 1.21500 1.01522 1.02336 0.92058 1.17945 0.91651 1.03334 0.81295 1.91480 1.85150 1.92245 1.44169 1.21106 0.93297 1.03675 0.99374 0.92328 0.94478 0.94485 0.94127 0.94280 0.74920 0.84872 0.85492 0.76575 0.82651 0.81669 0.83053 0.84676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 2 C 0.00 0.12 5.47 84.66 0.46 0.58 16 3 Si 0.96 41.82 27.47 68.60 1.88 43.70 16 4 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.24 -8.98 6.54 99.48 0.65 -8.33 16 7 C -0.54 -30.97 9.66 25.60 0.25 -30.72 16 8 H 0.03 1.69 7.99 -2.91 -0.02 1.66 16 9 C -0.01 -0.51 4.15 29.85 0.12 -0.38 16 10 C 0.14 5.84 5.61 86.38 0.48 6.33 16 11 N -0.72 -21.06 5.56 -463.06 -2.57 -23.63 16 12 C 0.50 14.50 7.71 87.66 0.68 15.18 16 13 O -0.58 -23.15 15.42 10.73 0.17 -22.98 16 14 C -0.16 -2.56 5.36 29.85 0.16 -2.40 16 15 C 0.17 3.20 2.75 29.85 0.08 3.29 16 16 H 0.09 2.17 7.82 -2.38 -0.02 2.16 16 17 O -0.56 -12.22 12.42 -135.21 -1.68 -13.90 16 18 C -0.09 -1.33 4.97 -19.87 -0.10 -1.42 16 19 C -0.12 -1.17 9.32 22.27 0.21 -0.97 16 20 C -0.08 -0.70 10.04 22.26 0.22 -0.47 16 21 C -0.16 -1.84 10.03 22.31 0.22 -1.61 16 22 C 0.08 1.28 7.30 22.38 0.16 1.45 16 23 F -0.15 -2.97 17.27 44.97 0.78 -2.20 16 24 C -0.16 -2.60 9.65 22.31 0.22 -2.39 16 25 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 26 H 0.04 1.52 7.20 -2.39 -0.02 1.51 16 27 H 0.04 1.49 7.57 -2.38 -0.02 1.47 16 28 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.41 8.94 8.47 -92.71 -0.79 8.15 16 31 H 0.13 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.38 4.69 7.49 -74.06 -0.56 4.13 16 34 H 0.16 0.67 6.77 -2.91 -0.02 0.65 16 35 H 0.17 0.37 8.06 -2.91 -0.02 0.35 16 36 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 37 H 0.14 2.19 8.04 -2.91 -0.02 2.17 16 Total: -1.00 -79.39 323.23 1.75 -77.64 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -0.29 Total: 14.10 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 3.17 Total: -13.54 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -2.27 Total: -82.82 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -1.51 Total: -36.88 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.78 Total: -2.20 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.88 Total: 43.70 kcal Total: -79.39 1.75 -77.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273126054.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.646 kcal (2) G-P(sol) polarization free energy of solvation -79.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds