Wall clock time and date at job start Tue Mar 31 2020 05:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00054 * 2 1 4 4 H 1.48498 * 109.47174 * 269.99882 * 3 2 1 5 5 H 1.48504 * 109.46913 * 30.00132 * 3 2 1 6 6 H 1.48501 * 109.47062 * 149.99931 * 3 2 1 7 7 C 1.37875 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99970 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00038 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47324 * 179.97438 * 9 7 2 11 11 N 1.46494 * 109.47001 * 180.02562 * 10 9 7 12 12 C 1.34784 * 119.99635 * 180.02562 * 11 10 9 13 13 O 1.21279 * 119.99925 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99961 * 180.02562 * 12 11 10 15 15 C 1.52992 * 109.47257 * 180.02562 * 14 12 11 16 16 H 1.09006 * 109.47047 * 54.99685 * 15 14 12 17 17 O 1.42899 * 109.47135 * 294.99778 * 15 14 12 18 18 C 1.50699 * 109.47279 * 174.99909 * 15 14 12 19 19 C 1.38273 * 119.98804 * 264.99762 * 18 15 14 20 20 C 1.38218 * 120.05023 * 180.02562 * 19 18 15 21 21 C 1.38216 * 120.02837 * 359.96141 * 20 19 18 22 22 C 1.38441 * 119.97600 * 0.02562 * 21 20 19 23 23 F 1.35098 * 120.03021 * 179.97438 * 22 21 20 24 24 C 1.38171 * 119.98620 * 84.72596 * 18 15 14 25 25 H 0.97001 * 119.99646 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46911 * 60.00279 * 9 7 2 27 27 H 1.08996 * 109.47413 * 300.00929 * 9 7 2 28 28 H 1.09005 * 109.46767 * 60.00353 * 10 9 7 29 29 H 1.09002 * 109.47113 * 300.00693 * 10 9 7 30 30 H 0.96995 * 120.00292 * 0.27801 * 11 10 9 31 31 H 1.09004 * 109.46932 * 300.00223 * 14 12 11 32 32 H 1.08997 * 109.47392 * 59.99562 * 14 12 11 33 33 H 0.96698 * 114.00063 * 299.99993 * 17 15 14 34 34 H 1.08002 * 119.97034 * 0.02562 * 19 18 15 35 35 H 1.08001 * 119.98611 * 179.97438 * 20 19 18 36 36 H 1.08003 * 120.01256 * 180.02562 * 21 20 19 37 37 H 1.07997 * 120.01481 * 359.97438 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0014 11 7 5.4865 -2.6365 0.0014 12 6 6.1604 -3.8038 0.0020 13 8 5.5539 -4.8541 0.0030 14 6 7.6674 -3.8039 0.0027 15 6 8.1774 -5.2463 0.0027 16 1 7.7430 -5.7852 -0.8394 17 8 7.7988 -5.8853 1.2235 18 6 9.6793 -5.2481 -0.1205 19 6 10.2707 -5.3878 -1.3626 20 6 11.6481 -5.3902 -1.4770 21 6 12.4360 -5.2521 -0.3499 22 6 11.8451 -5.1119 0.8942 23 9 12.6143 -4.9773 1.9967 24 6 10.4649 -5.1045 1.0070 25 1 -0.4850 0.8401 -0.0004 26 1 3.8752 -0.6797 0.8895 27 1 3.8746 -0.6807 -0.8904 28 1 3.6579 -3.1514 -0.8880 29 1 3.6585 -3.1495 0.8920 30 1 5.9715 -1.7965 0.0047 31 1 8.0311 -3.2902 -0.8873 32 1 8.0304 -3.2897 0.8926 33 1 8.1507 -5.4583 2.0165 34 1 9.6557 -5.4952 -2.2439 35 1 12.1089 -5.4998 -2.4476 36 1 13.5123 -5.2536 -0.4397 37 1 10.0027 -4.9906 1.9765 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273126055.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:40 Heat of formation + Delta-G solvation = -119.903142 kcal Electronic energy + Delta-G solvation = -20744.780944 eV Core-core repulsion = 17208.046855 eV Total energy + Delta-G solvation = -3536.734089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.26114 -40.23338 -39.09325 -36.93569 -34.94029 -32.84954 -32.38365 -31.09556 -30.64843 -29.45358 -25.60809 -24.15929 -23.07733 -21.69368 -20.81110 -20.15123 -18.40876 -17.00325 -16.94459 -16.75739 -16.54620 -16.16997 -15.95494 -15.68880 -15.02491 -14.59074 -14.42285 -14.22122 -14.01347 -13.60538 -13.34908 -13.15890 -12.75757 -12.59519 -12.30937 -12.02501 -11.76516 -11.50646 -11.38223 -11.20050 -10.46773 -10.40264 -10.27096 -9.98484 -9.58441 -9.39706 -9.28157 -9.06991 -8.65767 -8.53501 -6.12618 -4.12847 0.69484 0.75523 2.92302 3.08989 3.23340 3.30967 3.32202 3.49220 3.81651 4.19866 4.23007 4.32862 4.35877 4.56836 4.60016 4.75909 4.86570 4.94708 5.19764 5.20180 5.33812 5.37030 5.48461 5.61876 5.68907 5.86881 6.07282 6.10239 6.19400 6.43929 6.54437 6.74519 7.12016 7.21187 7.42402 7.65128 7.88433 8.42073 8.57192 8.91974 9.47389 11.00475 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030518 B = 0.002784 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.267799 B =10056.307585 C =10351.302164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.130 3.870 11 N -0.729 5.729 12 C 0.505 3.495 13 O -0.531 6.531 14 C -0.173 4.173 15 C 0.166 3.834 16 H 0.120 0.880 17 O -0.535 6.535 18 C -0.085 4.085 19 C -0.119 4.119 20 C -0.087 4.087 21 C -0.156 4.156 22 C 0.101 3.899 23 F -0.140 7.140 24 C -0.147 4.147 25 H 0.265 0.735 26 H 0.021 0.979 27 H 0.017 0.983 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.395 0.605 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.367 0.633 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.987 -7.740 -1.346 28.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.008 3.992 11 N -0.380 5.380 12 C 0.290 3.710 13 O -0.407 6.407 14 C -0.213 4.213 15 C 0.106 3.894 16 H 0.138 0.862 17 O -0.339 6.339 18 C -0.086 4.086 19 C -0.138 4.138 20 C -0.105 4.105 21 C -0.175 4.175 22 C 0.082 3.918 23 F -0.118 7.118 24 C -0.166 4.166 25 H 0.075 0.925 26 H 0.039 0.961 27 H 0.035 0.965 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.228 0.772 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.215 0.785 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 26.065 -8.783 -1.708 27.558 hybrid contribution 1.109 1.917 0.551 2.282 sum 27.174 -6.867 -1.157 28.052 Atomic orbital electron populations 1.69906 1.06296 1.27061 1.50387 1.25009 0.94770 0.99156 0.94378 0.86745 0.80244 0.83546 0.78482 1.20232 1.21259 1.19116 1.20928 0.88683 0.94907 1.51666 0.90613 1.19790 0.98004 0.91392 0.96756 1.21495 0.76069 1.00039 1.01604 1.46341 1.09170 1.07832 1.74637 1.20292 0.89196 0.84313 0.77203 1.90743 1.70044 1.31048 1.48859 1.22460 0.94506 0.99033 1.05336 1.20563 0.87025 0.92032 0.89818 0.86216 1.86804 1.76340 1.56073 1.14676 1.20550 0.96925 0.97957 0.93121 1.21128 0.95015 1.00378 0.97246 1.21037 0.93424 0.97747 0.98320 1.21194 1.01195 1.03809 0.91333 1.17653 0.88700 1.02418 0.83012 1.91515 1.75177 1.93250 1.51868 1.20881 0.91813 1.03833 1.00050 0.92535 0.96067 0.96485 0.92000 0.91979 0.77215 0.87924 0.88612 0.78547 0.84831 0.84720 0.84711 0.84736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.96 55.43 0.77 -26.50 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 20.88 27.47 -169.99 -4.67 16.21 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 7 C -0.52 -14.61 9.66 -34.44 -0.33 -14.94 16 8 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 9 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 10 C 0.13 2.62 5.61 -4.04 -0.02 2.60 16 11 N -0.73 -11.39 5.56 -60.29 -0.33 -11.73 16 12 C 0.51 7.63 7.71 -10.98 -0.08 7.54 16 13 O -0.53 -10.37 15.42 -8.89 -0.14 -10.51 16 14 C -0.17 -1.68 5.36 -27.89 -0.15 -1.83 16 15 C 0.17 1.68 2.76 -27.89 -0.08 1.60 16 16 H 0.12 1.35 7.87 -51.93 -0.41 0.94 16 17 O -0.53 -6.39 12.37 -49.68 -0.61 -7.01 16 18 C -0.08 -0.72 5.00 -104.63 -0.52 -1.24 16 19 C -0.12 -0.87 9.68 -39.58 -0.38 -1.25 16 20 C -0.09 -0.56 10.04 -39.60 -0.40 -0.96 16 21 C -0.16 -1.13 10.03 -39.51 -0.40 -1.53 16 22 C 0.10 0.88 7.30 -39.41 -0.29 0.59 16 23 F -0.14 -1.35 17.27 2.25 0.04 -1.31 16 24 C -0.15 -1.22 9.31 -39.51 -0.37 -1.59 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 27 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.39 5.03 8.47 -40.82 -0.35 4.68 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.37 3.00 7.40 45.56 0.34 3.34 16 34 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 37 H 0.13 0.91 6.62 -52.49 -0.35 0.56 16 LS Contribution 323.05 15.07 4.87 4.87 Total: -1.00 -34.41 323.05 -7.39 -41.80 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -4.08 Total: 3.92 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -3.24 Total: -9.74 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.44 Total: -38.23 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.75 Total: -17.52 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.41 -7.39 -41.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273126055.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.105 kcal (2) G-P(sol) polarization free energy of solvation -34.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds