Wall clock time and date at job start Tue Mar 31 2020 05:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00054 * 2 1 4 4 H 1.48498 * 109.47174 * 269.99882 * 3 2 1 5 5 H 1.48504 * 109.46913 * 30.00132 * 3 2 1 6 6 H 1.48501 * 109.47062 * 149.99931 * 3 2 1 7 7 C 1.37875 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99970 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00038 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47324 * 179.97438 * 9 7 2 11 11 N 1.46494 * 109.47001 * 180.02562 * 10 9 7 12 12 C 1.34784 * 119.99635 * 180.02562 * 11 10 9 13 13 O 1.21279 * 119.99925 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99961 * 180.02562 * 12 11 10 15 15 C 1.52992 * 109.47257 * 180.02562 * 14 12 11 16 16 H 1.09006 * 109.47047 * 54.99685 * 15 14 12 17 17 O 1.42899 * 109.47135 * 294.99778 * 15 14 12 18 18 C 1.50699 * 109.47279 * 174.99909 * 15 14 12 19 19 C 1.38273 * 119.98804 * 264.99762 * 18 15 14 20 20 C 1.38218 * 120.05023 * 180.02562 * 19 18 15 21 21 C 1.38216 * 120.02837 * 359.96141 * 20 19 18 22 22 C 1.38441 * 119.97600 * 0.02562 * 21 20 19 23 23 F 1.35098 * 120.03021 * 179.97438 * 22 21 20 24 24 C 1.38171 * 119.98620 * 84.72596 * 18 15 14 25 25 H 0.97001 * 119.99646 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46911 * 60.00279 * 9 7 2 27 27 H 1.08996 * 109.47413 * 300.00929 * 9 7 2 28 28 H 1.09005 * 109.46767 * 60.00353 * 10 9 7 29 29 H 1.09002 * 109.47113 * 300.00693 * 10 9 7 30 30 H 0.96995 * 120.00292 * 0.27801 * 11 10 9 31 31 H 1.09004 * 109.46932 * 300.00223 * 14 12 11 32 32 H 1.08997 * 109.47392 * 59.99562 * 14 12 11 33 33 H 0.96698 * 114.00063 * 299.99993 * 17 15 14 34 34 H 1.08002 * 119.97034 * 0.02562 * 19 18 15 35 35 H 1.08001 * 119.98611 * 179.97438 * 20 19 18 36 36 H 1.08003 * 120.01256 * 180.02562 * 21 20 19 37 37 H 1.07997 * 120.01481 * 359.97438 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0014 11 7 5.4865 -2.6365 0.0014 12 6 6.1604 -3.8038 0.0020 13 8 5.5539 -4.8541 0.0030 14 6 7.6674 -3.8039 0.0027 15 6 8.1774 -5.2463 0.0027 16 1 7.7430 -5.7852 -0.8394 17 8 7.7988 -5.8853 1.2235 18 6 9.6793 -5.2481 -0.1205 19 6 10.2707 -5.3878 -1.3626 20 6 11.6481 -5.3902 -1.4770 21 6 12.4360 -5.2521 -0.3499 22 6 11.8451 -5.1119 0.8942 23 9 12.6143 -4.9773 1.9967 24 6 10.4649 -5.1045 1.0070 25 1 -0.4850 0.8401 -0.0004 26 1 3.8752 -0.6797 0.8895 27 1 3.8746 -0.6807 -0.8904 28 1 3.6579 -3.1514 -0.8880 29 1 3.6585 -3.1495 0.8920 30 1 5.9715 -1.7965 0.0047 31 1 8.0311 -3.2902 -0.8873 32 1 8.0304 -3.2897 0.8926 33 1 8.1507 -5.4583 2.0165 34 1 9.6557 -5.4952 -2.2439 35 1 12.1089 -5.4998 -2.4476 36 1 13.5123 -5.2536 -0.4397 37 1 10.0027 -4.9906 1.9765 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273126055.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:40 Heat of formation + Delta-G solvation = -144.845401 kcal Electronic energy + Delta-G solvation = -20745.862521 eV Core-core repulsion = 17208.046855 eV Total energy + Delta-G solvation = -3537.815666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.90721 -41.11241 -40.07142 -37.76992 -36.52783 -34.77719 -33.22211 -32.17429 -31.58481 -30.53318 -27.05891 -25.32718 -23.63764 -22.71476 -22.31097 -21.37328 -19.18764 -18.96494 -17.76880 -17.68103 -17.21731 -17.07943 -16.71843 -16.59893 -16.26708 -16.21370 -15.73455 -15.11280 -14.87452 -14.77006 -14.63842 -14.40339 -14.02095 -13.41565 -13.33067 -13.10819 -12.85330 -12.76933 -12.36557 -12.20698 -12.14487 -12.07935 -11.75849 -11.51816 -11.22826 -10.78994 -10.78813 -9.99928 -9.96198 -9.66911 -8.30231 -6.37819 0.12650 0.21609 1.39090 1.42169 1.53346 1.73768 2.26760 2.36942 2.59683 3.04865 3.18595 3.50481 3.55031 3.72457 3.80655 4.04129 4.16511 4.19715 4.32136 4.39559 4.44231 4.46977 4.64979 4.75644 4.79863 4.84084 5.08362 5.14873 5.18478 5.35008 5.41167 5.45494 5.49090 5.66613 5.90490 6.22293 6.65627 6.72699 6.77237 7.26835 7.38050 8.86762 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030518 B = 0.002784 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.267799 B =10056.307585 C =10351.302164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.235 1.235 7 C -0.541 4.541 8 H 0.026 0.974 9 C -0.012 4.012 10 C 0.145 3.855 11 N -0.720 5.720 12 C 0.503 3.497 13 O -0.581 6.581 14 C -0.158 4.158 15 C 0.168 3.832 16 H 0.103 0.897 17 O -0.562 6.562 18 C -0.090 4.090 19 C -0.122 4.122 20 C -0.085 4.085 21 C -0.157 4.157 22 C 0.079 3.921 23 F -0.150 7.150 24 C -0.152 4.152 25 H 0.268 0.732 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.039 0.961 30 H 0.414 0.586 31 H 0.134 0.866 32 H 0.124 0.876 33 H 0.381 0.619 34 H 0.148 0.852 35 H 0.163 0.837 36 H 0.151 0.849 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.511 -6.029 -1.991 31.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.158 1.158 7 C -0.580 4.580 8 H 0.045 0.955 9 C -0.050 4.050 10 C 0.020 3.980 11 N -0.372 5.372 12 C 0.291 3.709 13 O -0.460 6.460 14 C -0.197 4.197 15 C 0.108 3.892 16 H 0.121 0.879 17 O -0.369 6.369 18 C -0.091 4.091 19 C -0.140 4.140 20 C -0.102 4.102 21 C -0.175 4.175 22 C 0.060 3.940 23 F -0.129 7.129 24 C -0.171 4.171 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.250 0.750 31 H 0.152 0.848 32 H 0.142 0.858 33 H 0.230 0.770 34 H 0.166 0.834 35 H 0.180 0.820 36 H 0.169 0.831 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 29.643 -7.066 -2.347 30.564 hybrid contribution -0.035 1.253 0.735 1.453 sum 29.608 -5.813 -1.612 30.216 Atomic orbital electron populations 1.70086 1.08661 1.28455 1.51988 1.26123 0.95710 1.03993 0.93639 0.85507 0.79654 0.77131 0.79372 1.18884 1.21357 1.15840 1.21289 0.91786 0.93300 1.51587 0.95529 1.19643 0.94265 0.92991 0.98061 1.20971 0.79135 0.98219 0.99634 1.46096 1.07066 1.09330 1.74696 1.21241 0.91396 0.83009 0.75272 1.90731 1.71606 1.32816 1.50866 1.22448 0.89597 0.99566 1.08110 1.20475 0.88157 0.91812 0.88719 0.87923 1.86760 1.77039 1.57183 1.15945 1.20334 0.95586 0.99384 0.93772 1.21403 0.95758 0.99511 0.97315 1.21354 0.93011 0.96592 0.99269 1.21489 1.02309 1.02742 0.90972 1.17900 0.88945 1.03815 0.83348 1.91485 1.75405 1.93509 1.52490 1.20994 0.91842 1.03692 1.00542 0.92330 0.94516 0.94506 0.94042 0.94291 0.74961 0.84846 0.85802 0.76953 0.83377 0.81970 0.83094 0.83872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 2 C 0.00 0.13 5.47 84.65 0.46 0.59 16 3 Si 0.96 41.89 27.47 68.60 1.88 43.77 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.24 -9.03 6.54 99.48 0.65 -8.38 16 7 C -0.54 -30.94 9.66 25.60 0.25 -30.69 16 8 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 9 C -0.01 -0.52 4.16 29.85 0.12 -0.40 16 10 C 0.14 5.84 5.61 86.38 0.48 6.33 16 11 N -0.72 -21.11 5.56 -463.05 -2.57 -23.68 16 12 C 0.50 14.49 7.71 87.66 0.68 15.17 16 13 O -0.58 -22.94 15.42 10.79 0.17 -22.77 16 14 C -0.16 -2.60 5.36 29.85 0.16 -2.44 16 15 C 0.17 3.15 2.76 29.85 0.08 3.23 16 16 H 0.10 2.25 7.87 -2.38 -0.02 2.23 16 17 O -0.56 -13.09 12.37 -135.17 -1.67 -14.76 16 18 C -0.09 -1.32 5.00 -19.87 -0.10 -1.42 16 19 C -0.12 -1.43 9.68 22.27 0.22 -1.21 16 20 C -0.08 -0.81 10.04 22.26 0.22 -0.59 16 21 C -0.16 -1.86 10.03 22.31 0.22 -1.64 16 22 C 0.08 1.24 7.30 22.38 0.16 1.40 16 23 F -0.15 -2.74 17.27 44.97 0.78 -1.96 16 24 C -0.15 -2.24 9.31 22.31 0.21 -2.04 16 25 H 0.27 15.51 8.31 -92.71 -0.77 14.73 16 26 H 0.04 1.51 7.20 -2.38 -0.02 1.49 16 27 H 0.04 1.49 7.57 -2.39 -0.02 1.47 16 28 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.41 9.02 8.47 -92.71 -0.79 8.23 16 31 H 0.13 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.38 5.84 7.40 -74.06 -0.55 5.29 16 34 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 35 H 0.16 0.62 8.06 -2.91 -0.02 0.60 16 36 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 37 H 0.14 1.71 6.62 -2.91 -0.02 1.69 16 Total: -1.00 -78.25 323.05 1.77 -76.48 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -0.28 Total: 15.79 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 3.17 Total: -13.70 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -2.27 Total: -82.84 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -1.51 Total: -37.53 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.88 Total: 43.77 kcal Total: -78.25 1.77 -76.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273126055.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.369 kcal (2) G-P(sol) polarization free energy of solvation -78.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds