Wall clock time and date at job start Tue Mar 31 2020 05:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35129 * 125.61635 * 2 1 4 4 C 1.40356 * 107.11594 * 180.02562 * 3 2 1 5 5 C 1.36545 * 106.70897 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98797 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00161 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99639 * 179.97438 * 6 5 4 9 9 N 1.40109 * 119.99659 * 179.72212 * 8 6 5 10 10 C 1.34774 * 119.99481 * 180.27982 * 9 8 6 11 11 O 1.21593 * 119.99194 * 180.02562 * 10 9 8 12 12 N 1.34774 * 120.00548 * 0.02562 * 10 9 8 13 13 C 1.46499 * 119.99899 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47073 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.47500 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99776 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00239 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00041 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99847 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46986 * 90.00259 * 19 17 15 21 21 H 1.48501 * 109.46810 * 209.99644 * 19 17 15 22 22 H 1.48492 * 109.47096 * 329.99997 * 19 17 15 23 23 O 1.33933 * 125.61495 * 180.33545 * 2 1 3 24 24 H 1.09005 * 109.46880 * 89.99806 * 1 2 3 25 25 H 1.08998 * 109.47359 * 209.99953 * 1 2 3 26 26 H 1.08998 * 109.47433 * 329.99941 * 1 2 3 27 27 H 1.08003 * 126.44130 * 0.02562 * 3 2 1 28 28 H 1.08007 * 126.64671 * 180.02562 * 4 3 2 29 29 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 30 30 H 0.97000 * 119.99800 * 0.27836 * 9 8 6 31 31 H 0.96996 * 120.00143 * 0.02562 * 12 10 9 32 32 H 1.08998 * 109.47134 * 299.99549 * 13 12 10 33 33 H 1.08994 * 109.47397 * 59.99841 * 13 12 10 34 34 H 1.09005 * 109.47338 * 300.00205 * 14 13 12 35 35 H 1.09007 * 109.46922 * 59.99533 * 14 13 12 36 36 H 0.97001 * 120.00302 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6531 -0.0006 5 6 3.5823 -0.7116 -0.0015 6 6 4.7414 -1.6101 -0.0029 7 8 5.8680 -1.1499 -0.0038 8 7 4.5589 -2.9455 -0.0032 9 7 5.6663 -3.8038 -0.0104 10 6 5.4837 -5.1391 -0.0164 11 8 6.4448 -5.8839 -0.0222 12 7 4.2360 -5.6488 -0.0160 13 6 4.0377 -7.1002 -0.0219 14 6 2.5395 -7.4103 -0.0194 15 6 2.3354 -8.9034 -0.0262 16 1 3.1890 -9.5651 -0.0313 17 6 1.0590 -9.4248 -0.0259 18 7 0.8809 -10.7278 -0.0322 19 14 -0.4174 -8.2803 -0.0163 20 1 -0.8120 -7.9698 -1.4138 21 1 -1.5497 -8.9391 0.6830 22 1 -0.0641 -7.0225 0.6894 23 8 2.2869 -1.0888 -0.0064 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.9612 2.1260 0.0004 28 1 4.5113 1.2704 -0.0004 29 1 3.6610 -3.3123 -0.0029 30 1 6.5642 -3.4369 -0.0112 31 1 3.4694 -5.0546 -0.0117 32 1 4.4957 -7.5259 -0.9148 33 1 4.4995 -7.5337 0.8651 34 1 2.0818 -6.9847 0.8736 35 1 2.0772 -6.9767 -0.9063 36 1 -0.0170 -11.0946 -0.0324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273597475.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:18 Heat of formation + Delta-G solvation = -16.095019 kcal Electronic energy + Delta-G solvation = -21051.090047 eV Core-core repulsion = 17538.777378 eV Total energy + Delta-G solvation = -3512.312669 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.14427 -40.51424 -39.19386 -35.92965 -35.18027 -33.75993 -32.82329 -32.56532 -31.23916 -29.96608 -27.48917 -25.02903 -23.20811 -22.09717 -21.53418 -20.86232 -20.68088 -19.30978 -18.51546 -17.01219 -16.95082 -16.84565 -15.77782 -15.70144 -15.25482 -14.89643 -14.71977 -14.18820 -13.96924 -13.69657 -13.61870 -13.57465 -13.41287 -13.39977 -12.66250 -12.38683 -11.69338 -11.55255 -11.24654 -11.00534 -10.49149 -10.47204 -10.45931 -10.10831 -9.95906 -9.39259 -9.06004 -8.86604 -8.66143 -8.38569 -6.15374 -4.16029 0.58909 1.53912 1.88715 2.24616 2.68879 3.14353 3.20586 3.22475 3.27463 3.29329 3.96118 4.32853 4.33916 4.47404 4.78975 4.88326 4.97768 5.14313 5.17193 5.20885 5.39980 5.54120 5.84326 5.93241 6.09474 6.13869 6.42219 6.48205 6.55566 6.58653 7.06687 7.08016 7.15485 7.44826 7.60704 8.09776 8.39341 8.54200 8.88983 9.44141 10.97617 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014190 B = 0.004235 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.681712 B = 6609.547229 C = 8556.472946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.032 3.968 3 C -0.226 4.226 4 C -0.103 4.103 5 C -0.081 4.081 6 C 0.608 3.392 7 O -0.517 6.517 8 N -0.515 5.515 9 N -0.535 5.535 10 C 0.709 3.291 11 O -0.568 6.568 12 N -0.738 5.738 13 C 0.145 3.855 14 C -0.022 4.022 15 C -0.524 4.524 16 H 0.077 0.923 17 C 0.070 3.930 18 N -0.897 5.897 19 Si 0.882 3.118 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.267 1.267 23 O -0.163 6.163 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.159 0.841 28 H 0.163 0.837 29 H 0.426 0.574 30 H 0.440 0.560 31 H 0.387 0.613 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.022 0.978 35 H 0.018 0.982 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.775 25.905 0.108 25.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.021 4.021 3 C -0.245 4.245 4 C -0.124 4.124 5 C -0.134 4.134 6 C 0.394 3.606 7 O -0.394 6.394 8 N -0.265 5.265 9 N -0.294 5.294 10 C 0.409 3.591 11 O -0.442 6.442 12 N -0.394 5.394 13 C 0.022 3.978 14 C -0.060 4.060 15 C -0.562 4.562 16 H 0.095 0.905 17 C -0.132 4.132 18 N -0.535 5.535 19 Si 0.709 3.291 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.191 1.191 23 O -0.059 6.059 24 H 0.108 0.892 25 H 0.103 0.897 26 H 0.113 0.887 27 H 0.176 0.824 28 H 0.181 0.819 29 H 0.269 0.731 30 H 0.286 0.714 31 H 0.220 0.780 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.041 0.959 35 H 0.036 0.964 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.610 25.003 0.106 25.010 hybrid contribution -1.326 0.945 -0.020 1.628 sum -1.936 25.947 0.086 26.020 Atomic orbital electron populations 1.20493 0.84240 1.04875 1.04329 1.22920 0.94413 0.83863 1.00891 1.21621 0.92144 1.00003 1.10767 1.21942 0.98864 0.92480 0.99068 1.21473 0.81468 0.94117 1.16378 1.16387 0.86924 0.79590 0.77652 1.90919 1.21797 1.75389 1.51251 1.44697 1.03726 1.02578 1.75547 1.44736 1.02230 1.00016 1.82412 1.15827 0.85011 0.79853 0.78428 1.91032 1.40055 1.54462 1.58610 1.45620 1.04926 1.10352 1.78459 1.21518 0.99393 0.74785 1.02061 1.19814 0.90503 0.98813 0.96875 1.20887 0.94272 0.89193 1.51848 0.90482 1.24995 0.98909 0.94979 0.94345 1.69899 1.22384 1.11006 1.50211 0.86755 0.82520 0.81322 0.78487 1.20205 1.21229 1.19132 1.84018 1.15763 1.35191 1.70954 0.89231 0.89734 0.88722 0.82356 0.81916 0.73128 0.71359 0.77973 0.91597 0.91580 0.95948 0.96388 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.41 36.01 0.37 0.03 16 2 C 0.03 0.24 7.31 -35.41 -0.26 -0.02 16 3 C -0.23 -1.63 10.77 -39.89 -0.43 -2.06 16 4 C -0.10 -0.92 10.62 -39.40 -0.42 -1.34 16 5 C -0.08 -0.85 7.13 -36.80 -0.26 -1.11 16 6 C 0.61 7.28 7.90 -12.86 -0.10 7.18 16 7 O -0.52 -7.42 16.70 5.20 0.09 -7.34 16 8 N -0.52 -5.89 6.25 30.26 0.19 -5.70 16 9 N -0.54 -7.23 6.26 27.63 0.17 -7.06 16 10 C 0.71 11.79 8.68 -86.92 -0.75 11.04 16 11 O -0.57 -11.62 17.18 5.28 0.09 -11.53 16 12 N -0.74 -11.81 5.52 -65.23 -0.36 -12.17 16 13 C 0.14 2.85 5.61 -4.04 -0.02 2.83 16 14 C -0.02 -0.49 4.16 -27.88 -0.12 -0.60 16 15 C -0.52 -14.29 9.66 -34.44 -0.33 -14.63 16 16 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 17 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -26.83 13.96 55.43 0.77 -26.06 16 19 Si 0.88 20.38 27.47 -169.99 -4.67 15.71 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.27 -5.75 6.54 56.52 0.37 -5.38 16 23 O -0.16 -1.55 10.40 4.99 0.05 -1.50 16 24 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 27 H 0.16 0.72 8.06 -52.48 -0.42 0.29 16 28 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 29 H 0.43 4.15 6.46 -182.59 -1.18 2.97 16 30 H 0.44 5.81 8.10 -182.59 -1.48 4.34 16 31 H 0.39 5.08 6.39 -40.82 -0.26 4.82 16 32 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 35 H 0.02 0.38 7.57 -51.92 -0.39 -0.01 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 321.07 15.07 4.84 4.84 Total: -1.00 -33.87 321.07 -7.48 -41.34 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.23 Total: 6.29 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -2.42 Total: 3.17 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 0.78 Total: -50.99 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: 0.23 Total: -20.36 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.67 Total: 15.71 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.87 -7.48 -41.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273597475.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.246 kcal (2) G-P(sol) polarization free energy of solvation -33.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds