Wall clock time and date at job start Tue Mar 31 2020 05:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35129 * 125.61635 * 2 1 4 4 C 1.40356 * 107.11594 * 180.02562 * 3 2 1 5 5 C 1.36545 * 106.70897 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98797 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00161 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99639 * 179.97438 * 6 5 4 9 9 N 1.40109 * 119.99659 * 179.72212 * 8 6 5 10 10 C 1.34774 * 119.99481 * 180.27982 * 9 8 6 11 11 O 1.21593 * 119.99194 * 180.02562 * 10 9 8 12 12 N 1.34774 * 120.00548 * 0.02562 * 10 9 8 13 13 C 1.46499 * 119.99899 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47073 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.47500 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99776 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00239 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00041 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99847 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46986 * 90.00259 * 19 17 15 21 21 H 1.48501 * 109.46810 * 209.99644 * 19 17 15 22 22 H 1.48492 * 109.47096 * 329.99997 * 19 17 15 23 23 O 1.33933 * 125.61495 * 180.33545 * 2 1 3 24 24 H 1.09005 * 109.46880 * 89.99806 * 1 2 3 25 25 H 1.08998 * 109.47359 * 209.99953 * 1 2 3 26 26 H 1.08998 * 109.47433 * 329.99941 * 1 2 3 27 27 H 1.08003 * 126.44130 * 0.02562 * 3 2 1 28 28 H 1.08007 * 126.64671 * 180.02562 * 4 3 2 29 29 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 30 30 H 0.97000 * 119.99800 * 0.27836 * 9 8 6 31 31 H 0.96996 * 120.00143 * 0.02562 * 12 10 9 32 32 H 1.08998 * 109.47134 * 299.99549 * 13 12 10 33 33 H 1.08994 * 109.47397 * 59.99841 * 13 12 10 34 34 H 1.09005 * 109.47338 * 300.00205 * 14 13 12 35 35 H 1.09007 * 109.46922 * 59.99533 * 14 13 12 36 36 H 0.97001 * 120.00302 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6531 -0.0006 5 6 3.5823 -0.7116 -0.0015 6 6 4.7414 -1.6101 -0.0029 7 8 5.8680 -1.1499 -0.0038 8 7 4.5589 -2.9455 -0.0032 9 7 5.6663 -3.8038 -0.0104 10 6 5.4837 -5.1391 -0.0164 11 8 6.4448 -5.8839 -0.0222 12 7 4.2360 -5.6488 -0.0160 13 6 4.0377 -7.1002 -0.0219 14 6 2.5395 -7.4103 -0.0194 15 6 2.3354 -8.9034 -0.0262 16 1 3.1890 -9.5651 -0.0313 17 6 1.0590 -9.4248 -0.0259 18 7 0.8809 -10.7278 -0.0322 19 14 -0.4174 -8.2803 -0.0163 20 1 -0.8120 -7.9698 -1.4138 21 1 -1.5497 -8.9391 0.6830 22 1 -0.0641 -7.0225 0.6894 23 8 2.2869 -1.0888 -0.0064 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.9612 2.1260 0.0004 28 1 4.5113 1.2704 -0.0004 29 1 3.6610 -3.3123 -0.0029 30 1 6.5642 -3.4369 -0.0112 31 1 3.4694 -5.0546 -0.0117 32 1 4.4957 -7.5259 -0.9148 33 1 4.4995 -7.5337 0.8651 34 1 2.0818 -6.9847 0.8736 35 1 2.0772 -6.9767 -0.9063 36 1 -0.0170 -11.0946 -0.0324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273597475.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:17 Heat of formation + Delta-G solvation = -42.293757 kcal Electronic energy + Delta-G solvation = -21052.226110 eV Core-core repulsion = 17538.777378 eV Total energy + Delta-G solvation = -3513.448732 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.77839 -41.69535 -40.35368 -37.07404 -36.79070 -34.77656 -34.34869 -33.26318 -32.34740 -31.57745 -28.11774 -26.84626 -23.99809 -23.14735 -22.68790 -22.26281 -21.54975 -20.46606 -19.51143 -18.91865 -18.03817 -17.66050 -17.02663 -16.66655 -16.42483 -16.12751 -15.99495 -15.70366 -15.38254 -15.16317 -14.59807 -14.25909 -14.04164 -13.99339 -13.72047 -13.35766 -13.12840 -12.77957 -12.72826 -12.31634 -12.17755 -11.98106 -11.74857 -11.64514 -11.45431 -11.08014 -10.77308 -10.35314 -9.76272 -9.39315 -8.27862 -6.35602 -0.14348 0.50862 1.27762 1.40906 1.44107 1.54990 1.58243 1.74883 1.87209 1.99956 2.39011 3.07363 3.21396 3.69950 3.87386 3.92526 4.26768 4.43577 4.51843 4.56803 4.72478 4.74559 4.75661 4.87400 4.99184 5.13275 5.15383 5.26359 5.40614 5.42951 5.46512 5.62533 5.79653 6.09392 6.23336 6.39357 6.72236 6.97935 7.23239 7.29246 8.88888 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014190 B = 0.004235 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.681712 B = 6609.547229 C = 8556.472946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.035 3.965 3 C -0.230 4.230 4 C -0.100 4.100 5 C -0.110 4.110 6 C 0.612 3.388 7 O -0.547 6.547 8 N -0.508 5.508 9 N -0.525 5.525 10 C 0.713 3.287 11 O -0.610 6.610 12 N -0.725 5.725 13 C 0.160 3.840 14 C -0.013 4.013 15 C -0.539 4.539 16 H 0.030 0.970 17 C 0.003 3.997 18 N -0.951 5.951 19 Si 0.958 3.042 20 H -0.265 1.265 21 H -0.289 1.289 22 H -0.233 1.233 23 O -0.172 6.172 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.117 0.883 27 H 0.187 0.813 28 H 0.169 0.831 29 H 0.435 0.565 30 H 0.444 0.556 31 H 0.405 0.595 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.040 0.960 35 H 0.038 0.962 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.238 29.437 0.137 29.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.018 4.018 3 C -0.248 4.248 4 C -0.121 4.121 5 C -0.163 4.163 6 C 0.401 3.599 7 O -0.425 6.425 8 N -0.260 5.260 9 N -0.281 5.281 10 C 0.413 3.587 11 O -0.487 6.487 12 N -0.382 5.382 13 C 0.036 3.964 14 C -0.051 4.051 15 C -0.577 4.577 16 H 0.048 0.952 17 C -0.194 4.194 18 N -0.591 5.591 19 Si 0.781 3.219 20 H -0.190 1.190 21 H -0.215 1.215 22 H -0.156 1.156 23 O -0.069 6.069 24 H 0.120 0.880 25 H 0.104 0.896 26 H 0.136 0.864 27 H 0.204 0.796 28 H 0.186 0.814 29 H 0.280 0.720 30 H 0.290 0.710 31 H 0.241 0.759 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.081 28.595 0.136 28.761 hybrid contribution -0.552 -0.113 -0.034 0.565 sum -3.633 28.482 0.103 28.713 Atomic orbital electron populations 1.20715 0.81728 1.06079 1.05462 1.23707 0.95777 0.83425 0.98868 1.21974 0.91081 1.01396 1.10378 1.22246 1.00162 0.92120 0.97562 1.21165 0.81549 0.94102 1.19448 1.16608 0.87185 0.79472 0.76648 1.90899 1.23117 1.75851 1.52648 1.44703 1.03270 1.02241 1.75757 1.44412 1.03219 0.99365 1.81128 1.15750 0.84419 0.80436 0.78122 1.91009 1.41320 1.56006 1.60317 1.45183 1.05581 1.09066 1.78384 1.21061 0.97930 0.76737 1.00680 1.19673 0.91930 0.95189 0.98331 1.21229 0.93145 0.91792 1.51579 0.95161 1.26090 1.02810 0.96790 0.93668 1.70078 1.23393 1.13713 1.51956 0.85549 0.77241 0.79806 0.79351 1.18965 1.21469 1.15578 1.84004 1.15423 1.36158 1.71343 0.87965 0.89610 0.86441 0.79599 0.81354 0.72041 0.70985 0.75883 0.93155 0.93158 0.94207 0.94365 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.41 71.24 0.74 0.37 16 2 C 0.03 0.41 7.31 24.97 0.18 0.59 16 3 C -0.23 -2.58 10.77 22.07 0.24 -2.34 16 4 C -0.10 -1.60 10.62 22.39 0.24 -1.36 16 5 C -0.11 -2.11 7.13 24.07 0.17 -1.94 16 6 C 0.61 14.02 7.90 86.44 0.68 14.71 16 7 O -0.55 -15.43 16.70 -4.33 -0.07 -15.51 16 8 N -0.51 -10.88 6.25 -176.40 -1.10 -11.98 16 9 N -0.52 -13.72 6.26 -184.75 -1.16 -14.88 16 10 C 0.71 23.27 8.68 179.06 1.55 24.82 16 11 O -0.61 -25.20 17.18 -4.01 -0.07 -25.27 16 12 N -0.73 -22.16 5.52 -478.54 -2.64 -24.80 16 13 C 0.16 6.25 5.61 86.38 0.48 6.74 16 14 C -0.01 -0.57 4.16 29.85 0.12 -0.44 16 15 C -0.54 -29.89 9.66 25.60 0.25 -29.64 16 16 H 0.03 1.89 7.99 -2.91 -0.02 1.87 16 17 C 0.00 0.19 5.47 84.65 0.46 0.66 16 18 N -0.95 -58.37 13.96 21.45 0.30 -58.07 16 19 Si 0.96 40.59 27.47 68.60 1.88 42.47 16 20 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 21 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.23 -8.55 6.54 99.48 0.65 -7.90 16 23 O -0.17 -2.87 10.40 -5.04 -0.05 -2.93 16 24 H 0.10 0.25 8.14 -2.38 -0.02 0.23 16 25 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 27 H 0.19 0.93 8.06 -2.91 -0.02 0.91 16 28 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 29 H 0.44 7.52 6.46 -213.31 -1.38 6.14 16 30 H 0.44 11.53 8.10 -213.31 -1.73 9.81 16 31 H 0.40 9.50 6.39 -92.71 -0.59 8.91 16 32 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.04 1.57 7.20 -2.38 -0.02 1.55 16 35 H 0.04 1.48 7.57 -2.38 -0.02 1.47 16 36 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -75.58 321.07 -0.39 -75.97 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: -2.61 Total: 22.83 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 5.13 Total: 12.16 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -4.60 Total: -109.74 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -0.19 Total: -43.70 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 1.88 Total: 42.47 kcal Total: -75.58 -0.39 -75.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273597475.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.672 kcal (2) G-P(sol) polarization free energy of solvation -75.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds