Wall clock time and date at job start Tue Mar 31 2020 05:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99892 * 2 1 4 4 C 1.53004 * 109.46988 * 54.52367 * 3 2 1 5 5 C 1.50698 * 109.47193 * 174.52140 * 3 2 1 6 6 O 1.21293 * 120.00244 * 144.99723 * 5 3 2 7 7 N 1.34776 * 120.00123 * 325.00606 * 5 3 2 8 8 C 1.46501 * 119.99864 * 359.97438 * 7 5 3 9 9 C 1.37099 * 120.00071 * 179.97438 * 7 5 3 10 10 H 1.07993 * 119.99815 * 23.20159 * 9 7 5 11 11 C 1.38952 * 119.99924 * 203.19486 * 9 7 5 12 12 N 1.31413 * 120.00248 * 11.60111 * 11 9 7 13 13 Si 1.86801 * 119.99822 * 191.60352 * 11 9 7 14 14 H 1.48504 * 109.47288 * 60.00141 * 13 11 9 15 15 H 1.48504 * 109.46870 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47065 * 299.99796 * 13 11 9 17 17 C 1.50693 * 109.47406 * 294.52537 * 3 2 1 18 18 C 1.38218 * 120.01476 * 354.59713 * 17 3 2 19 19 C 1.38225 * 120.02761 * 179.97438 * 18 17 3 20 20 C 1.38261 * 120.05085 * 359.97438 * 19 18 17 21 21 C 1.38170 * 120.02842 * 0.02562 * 20 19 18 22 22 C 1.38441 * 120.01512 * 174.83289 * 17 3 2 23 23 F 1.35098 * 120.02374 * 0.04100 * 22 17 3 24 24 H 1.09005 * 109.47388 * 59.83118 * 1 2 3 25 25 H 1.08998 * 109.47063 * 179.82952 * 1 2 3 26 26 H 1.08998 * 109.47015 * 299.83170 * 1 2 3 27 27 H 1.09000 * 109.47158 * 300.00383 * 4 3 2 28 28 H 1.09006 * 109.46879 * 59.99646 * 4 3 2 29 29 H 1.09002 * 109.47022 * 179.97438 * 4 3 2 30 30 H 1.08995 * 109.47794 * 84.76574 * 8 7 5 31 31 H 1.09006 * 109.46964 * 204.76776 * 8 7 5 32 32 H 1.09004 * 109.47211 * 324.75790 * 8 7 5 33 33 H 0.97000 * 119.99866 * 180.02562 * 12 11 9 34 34 H 1.07999 * 119.98508 * 359.95796 * 18 17 3 35 35 H 1.08003 * 119.97349 * 180.02562 * 19 18 17 36 36 H 1.08004 * 119.98795 * 180.02562 * 20 19 18 37 37 H 1.07997 * 120.01487 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4528 2.1119 1.1747 5 6 3.5065 1.1892 0.1356 6 8 4.2304 1.9762 -0.4369 7 7 4.0405 0.2106 0.8930 8 6 3.1662 -0.7398 1.5849 9 6 5.4019 0.1045 1.0160 10 1 6.0283 0.9673 0.8449 11 6 5.9754 -1.1132 1.3610 12 7 5.2499 -2.2088 1.3470 13 14 7.7780 -1.1928 1.8448 14 1 8.0090 -0.3371 3.0363 15 1 8.1428 -2.5961 2.1657 16 1 8.6148 -0.7086 0.7177 17 6 1.6758 2.0043 -1.2925 18 6 1.0085 1.3241 -2.2937 19 6 0.7011 1.9649 -3.4792 20 6 1.0602 3.2871 -3.6648 21 6 1.7273 3.9693 -2.6655 22 6 2.0411 3.3265 -1.4796 23 9 2.6983 3.9907 -0.5039 24 1 -0.3634 0.5165 -0.8885 25 1 -0.3633 -1.0276 -0.0031 26 1 -0.3633 0.5112 0.8915 27 1 0.3705 2.1960 1.0767 28 1 1.6947 1.6064 2.1097 29 1 1.8965 3.1075 1.1750 30 1 2.8997 -1.5494 0.9056 31 1 3.6871 -1.1486 2.4508 32 1 2.2614 -0.2283 1.9134 33 1 5.6503 -3.0588 1.5882 34 1 0.7273 0.2913 -2.1498 35 1 0.1793 1.4327 -4.2608 36 1 0.8192 3.7870 -4.5914 37 1 2.0074 5.0022 -2.8105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277437843.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:50 Heat of formation + Delta-G solvation = -65.077678 kcal Electronic energy + Delta-G solvation = -23464.755824 eV Core-core repulsion = 19930.399146 eV Total energy + Delta-G solvation = -3534.356678 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.38918 -40.06599 -38.07170 -36.94289 -34.66783 -32.01697 -31.49804 -30.47652 -29.11746 -27.12271 -26.08954 -24.60181 -23.31085 -22.46473 -21.36867 -19.08086 -17.39610 -17.11632 -16.58949 -15.93162 -15.65468 -15.19601 -15.06565 -14.83500 -14.59070 -14.20274 -13.91625 -13.51409 -13.39614 -12.77852 -12.58821 -12.50971 -12.16594 -11.89576 -11.64847 -11.58571 -11.53681 -11.14621 -11.07680 -10.97872 -10.67628 -10.43387 -10.31104 -10.16867 -9.29863 -8.87793 -8.81568 -8.37763 -8.22433 -7.55965 -6.24590 -3.80820 1.39657 1.46257 3.21284 3.27619 3.31906 3.62680 3.83007 4.18594 4.29145 4.64152 4.74061 4.92658 5.03283 5.10943 5.18402 5.42898 5.43609 5.52167 5.58444 5.64784 5.67544 5.83841 5.94600 6.01144 6.14225 6.27806 6.36253 6.40139 6.53099 6.59695 6.73012 7.11751 7.14344 7.42190 7.52353 7.62237 8.19593 8.55942 9.22916 9.49484 10.04759 10.78249 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023198 B = 0.006154 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.730148 B = 4548.527566 C = 5005.900808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.351 6.351 3 C 0.150 3.850 4 C -0.180 4.180 5 C 0.460 3.540 6 O -0.574 6.574 7 N -0.427 5.427 8 C 0.123 3.877 9 C -0.307 4.307 10 H 0.098 0.902 11 C 0.032 3.968 12 N -0.876 5.876 13 Si 0.927 3.073 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.273 1.273 17 C -0.123 4.123 18 C -0.084 4.084 19 C -0.143 4.143 20 C -0.095 4.095 21 C -0.167 4.167 22 C 0.145 3.855 23 F -0.123 7.123 24 H 0.050 0.950 25 H 0.086 0.914 26 H 0.044 0.956 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.031 0.969 33 H 0.267 0.733 34 H 0.140 0.860 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.682 5.463 -3.965 14.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.269 6.269 3 C 0.106 3.894 4 C -0.237 4.237 5 C 0.246 3.754 6 O -0.459 6.459 7 N -0.144 5.144 8 C -0.020 4.020 9 C -0.435 4.435 10 H 0.115 0.885 11 C -0.172 4.172 12 N -0.515 5.515 13 Si 0.753 3.247 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.198 1.198 17 C -0.125 4.125 18 C -0.102 4.102 19 C -0.161 4.161 20 C -0.113 4.113 21 C -0.186 4.186 22 C 0.125 3.875 23 F -0.101 7.101 24 H 0.068 0.932 25 H 0.104 0.896 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.157 0.843 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.132 5.454 -4.121 13.925 hybrid contribution 0.726 -0.012 0.369 0.815 sum -11.405 5.442 -3.752 13.183 Atomic orbital electron populations 1.23084 0.82783 1.02675 1.00612 1.88336 1.18658 1.25447 1.94438 1.20401 0.94230 0.83522 0.91200 1.22512 1.00951 1.02088 0.98177 1.19161 0.86479 0.86360 0.83423 1.90561 1.60038 1.44936 1.50340 1.43474 1.06393 1.25112 1.39405 1.21557 0.90736 0.92002 0.97726 1.19645 0.81425 0.96519 1.45959 0.88463 1.25351 1.00011 0.94553 0.97272 1.70036 1.36729 0.98457 1.46284 0.85998 0.82345 0.77069 0.79255 1.19903 1.20925 1.19802 1.20146 1.01209 0.93142 0.97979 1.21070 0.96727 1.00291 0.92082 1.21076 1.02452 0.95108 0.97482 1.20914 0.97612 0.94596 0.98163 1.21074 1.03141 1.01163 0.93227 1.17344 0.93532 0.89982 0.86625 1.91485 1.78079 1.79941 1.60570 0.93203 0.89552 0.93794 0.91853 0.90682 0.90027 0.92561 0.91438 0.95063 0.92250 0.84267 0.85673 0.85527 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.06 9.45 101.05 0.95 1.02 16 2 O -0.35 -6.57 6.03 -35.23 -0.21 -6.78 16 3 C 0.15 3.02 0.43 -92.93 -0.04 2.98 16 4 C -0.18 -3.11 7.61 37.16 0.28 -2.83 16 5 C 0.46 11.92 6.48 -10.99 -0.07 11.85 16 6 O -0.57 -16.56 13.84 5.55 0.08 -16.48 16 7 N -0.43 -11.57 3.02 -122.19 -0.37 -11.94 16 8 C 0.12 2.95 7.26 59.85 0.43 3.39 16 9 C -0.31 -8.91 9.27 -14.93 -0.14 -9.05 16 10 H 0.10 2.93 7.42 -52.49 -0.39 2.54 16 11 C 0.03 0.86 5.07 -17.47 -0.09 0.78 16 12 N -0.88 -24.10 10.70 55.50 0.59 -23.51 16 13 Si 0.93 21.29 29.57 -169.99 -5.03 16.27 16 14 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 C -0.12 -2.30 4.33 -104.56 -0.45 -2.76 16 18 C -0.08 -1.33 7.68 -39.59 -0.30 -1.63 16 19 C -0.14 -1.88 10.04 -39.58 -0.40 -2.28 16 20 C -0.09 -1.21 10.04 -39.60 -0.40 -1.61 16 21 C -0.17 -2.51 10.03 -39.52 -0.40 -2.91 16 22 C 0.14 2.69 6.18 -39.42 -0.24 2.45 16 23 F -0.12 -2.51 13.17 2.25 0.03 -2.48 16 24 H 0.05 0.61 5.05 -51.93 -0.26 0.35 16 25 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.04 0.53 6.35 -51.93 -0.33 0.20 16 27 H 0.06 0.90 6.48 -51.93 -0.34 0.56 16 28 H 0.07 1.29 6.72 -51.93 -0.35 0.94 16 29 H 0.08 1.48 5.92 -51.93 -0.31 1.17 16 30 H 0.06 1.41 7.38 -51.93 -0.38 1.03 16 31 H 0.07 1.69 6.60 -51.93 -0.34 1.35 16 32 H 0.03 0.65 4.82 -51.93 -0.25 0.40 16 33 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.14 2.06 5.59 -52.49 -0.29 1.77 16 35 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 36 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 37 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 294.50 15.07 4.44 4.44 Total: -1.00 -32.99 294.50 -5.40 -38.39 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -4.07 Total: 2.69 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -0.86 Total: -0.60 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.23 Total: -35.44 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.14 Total: -23.26 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.03 Total: -2.48 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.99 -5.40 -38.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277437843.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.687 kcal (2) G-P(sol) polarization free energy of solvation -32.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds