Wall clock time and date at job start Tue Mar 31 2020 05:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99892 * 2 1 4 4 C 1.53004 * 109.46988 * 54.52367 * 3 2 1 5 5 C 1.50698 * 109.47193 * 174.52140 * 3 2 1 6 6 O 1.21293 * 120.00244 * 144.99723 * 5 3 2 7 7 N 1.34776 * 120.00123 * 325.00606 * 5 3 2 8 8 C 1.46501 * 119.99864 * 359.97438 * 7 5 3 9 9 C 1.37099 * 120.00071 * 179.97438 * 7 5 3 10 10 H 1.07993 * 119.99815 * 23.20159 * 9 7 5 11 11 C 1.38952 * 119.99924 * 203.19486 * 9 7 5 12 12 N 1.31413 * 120.00248 * 11.60111 * 11 9 7 13 13 Si 1.86801 * 119.99822 * 191.60352 * 11 9 7 14 14 H 1.48504 * 109.47288 * 60.00141 * 13 11 9 15 15 H 1.48504 * 109.46870 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47065 * 299.99796 * 13 11 9 17 17 C 1.50693 * 109.47406 * 294.52537 * 3 2 1 18 18 C 1.38218 * 120.01476 * 354.59713 * 17 3 2 19 19 C 1.38225 * 120.02761 * 179.97438 * 18 17 3 20 20 C 1.38261 * 120.05085 * 359.97438 * 19 18 17 21 21 C 1.38170 * 120.02842 * 0.02562 * 20 19 18 22 22 C 1.38441 * 120.01512 * 174.83289 * 17 3 2 23 23 F 1.35098 * 120.02374 * 0.04100 * 22 17 3 24 24 H 1.09005 * 109.47388 * 59.83118 * 1 2 3 25 25 H 1.08998 * 109.47063 * 179.82952 * 1 2 3 26 26 H 1.08998 * 109.47015 * 299.83170 * 1 2 3 27 27 H 1.09000 * 109.47158 * 300.00383 * 4 3 2 28 28 H 1.09006 * 109.46879 * 59.99646 * 4 3 2 29 29 H 1.09002 * 109.47022 * 179.97438 * 4 3 2 30 30 H 1.08995 * 109.47794 * 84.76574 * 8 7 5 31 31 H 1.09006 * 109.46964 * 204.76776 * 8 7 5 32 32 H 1.09004 * 109.47211 * 324.75790 * 8 7 5 33 33 H 0.97000 * 119.99866 * 180.02562 * 12 11 9 34 34 H 1.07999 * 119.98508 * 359.95796 * 18 17 3 35 35 H 1.08003 * 119.97349 * 180.02562 * 19 18 17 36 36 H 1.08004 * 119.98795 * 180.02562 * 20 19 18 37 37 H 1.07997 * 120.01487 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4528 2.1119 1.1747 5 6 3.5065 1.1892 0.1356 6 8 4.2304 1.9762 -0.4369 7 7 4.0405 0.2106 0.8930 8 6 3.1662 -0.7398 1.5849 9 6 5.4019 0.1045 1.0160 10 1 6.0283 0.9673 0.8449 11 6 5.9754 -1.1132 1.3610 12 7 5.2499 -2.2088 1.3470 13 14 7.7780 -1.1928 1.8448 14 1 8.0090 -0.3371 3.0363 15 1 8.1428 -2.5961 2.1657 16 1 8.6148 -0.7086 0.7177 17 6 1.6758 2.0043 -1.2925 18 6 1.0085 1.3241 -2.2937 19 6 0.7011 1.9649 -3.4792 20 6 1.0602 3.2871 -3.6648 21 6 1.7273 3.9693 -2.6655 22 6 2.0411 3.3265 -1.4796 23 9 2.6983 3.9907 -0.5039 24 1 -0.3634 0.5165 -0.8885 25 1 -0.3633 -1.0276 -0.0031 26 1 -0.3633 0.5112 0.8915 27 1 0.3705 2.1960 1.0767 28 1 1.6947 1.6064 2.1097 29 1 1.8965 3.1075 1.1750 30 1 2.8997 -1.5494 0.9056 31 1 3.6871 -1.1486 2.4508 32 1 2.2614 -0.2283 1.9134 33 1 5.6503 -3.0588 1.5882 34 1 0.7273 0.2913 -2.1498 35 1 0.1793 1.4327 -4.2608 36 1 0.8192 3.7870 -4.5914 37 1 2.0074 5.0022 -2.8105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277437843.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:50 Heat of formation + Delta-G solvation = -86.470400 kcal Electronic energy + Delta-G solvation = -23465.683482 eV Core-core repulsion = 19930.399146 eV Total energy + Delta-G solvation = -3535.284336 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.79283 -41.56530 -39.60814 -38.43533 -36.71318 -33.65946 -33.30836 -31.65306 -30.40377 -28.49437 -27.97552 -26.49156 -24.67969 -23.64907 -22.90852 -20.71886 -19.05404 -18.64281 -18.33940 -17.34841 -17.19534 -16.70729 -16.58542 -16.35051 -15.95645 -15.74889 -15.54354 -15.13891 -14.96740 -14.25166 -14.05496 -13.81805 -13.70030 -13.39062 -13.22961 -13.15180 -12.95631 -12.85757 -12.63621 -12.45130 -12.35732 -12.17358 -12.13500 -11.67929 -11.00742 -10.56747 -10.44524 -9.82196 -9.66514 -9.52491 -8.33212 -5.99527 0.21485 0.29166 1.36447 1.38600 1.50234 1.86449 2.26442 2.61611 2.80005 3.08791 3.10639 3.43037 3.51560 3.85132 3.93364 4.02360 4.16366 4.39704 4.41822 4.52078 4.56017 4.58889 4.72148 4.77345 4.88355 4.93545 5.06723 5.13060 5.18240 5.23859 5.39534 5.42605 5.46754 5.50198 5.99425 6.07811 6.14615 6.48628 7.13375 7.45011 8.00768 8.68227 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023198 B = 0.006154 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.730148 B = 4548.527566 C = 5005.900808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.375 6.375 3 C 0.160 3.840 4 C -0.173 4.173 5 C 0.447 3.553 6 O -0.615 6.615 7 N -0.446 5.446 8 C 0.143 3.857 9 C -0.350 4.350 10 H 0.070 0.930 11 C -0.002 4.002 12 N -0.892 5.892 13 Si 0.992 3.008 14 H -0.266 1.266 15 H -0.266 1.266 16 H -0.277 1.277 17 C -0.152 4.152 18 C -0.094 4.094 19 C -0.131 4.131 20 C -0.082 4.082 21 C -0.170 4.170 22 C 0.105 3.895 23 F -0.146 7.146 24 H 0.064 0.936 25 H 0.108 0.892 26 H 0.057 0.943 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.274 0.726 34 H 0.147 0.853 35 H 0.165 0.835 36 H 0.171 0.829 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.506 5.149 -5.303 16.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 O -0.294 6.294 3 C 0.117 3.883 4 C -0.230 4.230 5 C 0.235 3.765 6 O -0.502 6.502 7 N -0.163 5.163 8 C 0.000 4.000 9 C -0.478 4.478 10 H 0.088 0.912 11 C -0.204 4.204 12 N -0.530 5.530 13 Si 0.815 3.185 14 H -0.191 1.191 15 H -0.190 1.190 16 H -0.203 1.203 17 C -0.153 4.153 18 C -0.112 4.112 19 C -0.149 4.149 20 C -0.100 4.100 21 C -0.189 4.189 22 C 0.085 3.915 23 F -0.125 7.125 24 H 0.083 0.917 25 H 0.126 0.874 26 H 0.076 0.924 27 H 0.117 0.883 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.164 0.836 35 H 0.183 0.817 36 H 0.189 0.811 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.997 5.123 -5.449 15.869 hybrid contribution 1.202 0.088 0.662 1.375 sum -12.795 5.210 -4.787 14.621 Atomic orbital electron populations 1.23380 0.79749 1.04560 1.02011 1.88256 1.21815 1.24592 1.94747 1.19990 0.90231 0.84697 0.93392 1.22462 1.02963 1.00714 0.96905 1.20241 0.89399 0.84875 0.81964 1.90502 1.62244 1.46040 1.51461 1.43755 1.06224 1.26056 1.40315 1.21385 0.91043 0.91335 0.96239 1.19633 0.82747 0.96601 1.48800 0.91174 1.26149 1.04308 0.93656 0.96276 1.70110 1.38382 0.98818 1.45693 0.85034 0.76781 0.77910 0.78784 1.19084 1.19023 1.20261 1.20193 1.03366 0.93514 0.98250 1.21292 0.96752 1.00653 0.92483 1.21569 1.00986 0.95339 0.97028 1.21452 0.95307 0.94447 0.98759 1.21433 1.02869 1.02243 0.92363 1.17858 0.95169 0.90700 0.87747 1.91415 1.78964 1.80362 1.61753 0.91749 0.87409 0.92402 0.88291 0.91123 0.91457 0.93984 0.93183 0.92083 0.91592 0.83593 0.81703 0.81140 0.83262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.05 9.45 113.37 1.07 1.02 16 2 O -0.37 -13.81 6.03 -148.98 -0.90 -14.71 16 3 C 0.16 6.52 0.43 -12.29 -0.01 6.52 16 4 C -0.17 -6.00 7.61 71.98 0.55 -5.45 16 5 C 0.45 24.18 6.48 87.66 0.57 24.74 16 6 O -0.62 -37.50 13.84 -3.07 -0.04 -37.55 16 7 N -0.45 -25.19 3.02 -658.89 -1.99 -27.17 16 8 C 0.14 7.00 7.26 127.77 0.93 7.93 16 9 C -0.35 -21.22 9.27 84.04 0.78 -20.44 16 10 H 0.07 4.51 7.42 -2.91 -0.02 4.49 16 11 C 0.00 -0.10 5.07 84.93 0.43 0.33 16 12 N -0.89 -49.64 10.70 21.66 0.23 -49.41 16 13 Si 0.99 44.26 29.57 68.60 2.03 46.29 16 14 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 15 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 16 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 17 C -0.15 -5.63 4.33 -19.82 -0.09 -5.71 16 18 C -0.09 -2.78 7.68 22.26 0.17 -2.61 16 19 C -0.13 -2.94 10.04 22.27 0.22 -2.71 16 20 C -0.08 -1.77 10.04 22.26 0.22 -1.55 16 21 C -0.17 -4.83 10.03 22.31 0.22 -4.61 16 22 C 0.10 3.92 6.18 22.38 0.14 4.06 16 23 F -0.15 -6.30 13.17 44.97 0.59 -5.70 16 24 H 0.06 1.39 5.05 -2.38 -0.01 1.38 16 25 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.06 1.24 6.35 -2.39 -0.02 1.23 16 27 H 0.10 2.65 6.48 -2.39 -0.02 2.64 16 28 H 0.07 2.44 6.72 -2.38 -0.02 2.42 16 29 H 0.07 2.53 5.92 -2.39 -0.01 2.51 16 30 H 0.04 2.14 7.38 -2.39 -0.02 2.13 16 31 H 0.05 2.57 6.60 -2.38 -0.02 2.56 16 32 H 0.06 2.56 4.82 -2.38 -0.01 2.55 16 33 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 34 H 0.15 4.01 5.59 -2.91 -0.02 4.00 16 35 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 36 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -76.39 294.50 6.24 -70.15 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 1.11 Total: 16.60 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 5.21 Total: 1.51 kcal Atomic # 7 Polarization: -74.83 SS G_CDS: -1.76 Total: -76.58 kcal Atomic # 8 Polarization: -51.32 SS G_CDS: -0.94 Total: -52.26 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.59 Total: -5.70 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -76.39 6.24 -70.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277437843.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.323 kcal (2) G-P(sol) polarization free energy of solvation -76.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds