Wall clock time and date at job start Tue Mar 31 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99810 * 2 1 4 4 C 1.52996 * 109.46807 * 304.25524 * 3 2 1 5 5 C 1.50700 * 109.46779 * 184.26203 * 3 2 1 6 6 O 1.21297 * 119.99496 * 216.54211 * 5 3 2 7 7 N 1.34770 * 120.00430 * 36.53787 * 5 3 2 8 8 C 1.46502 * 120.00136 * 185.23077 * 7 5 3 9 9 C 1.37097 * 119.99978 * 5.23307 * 7 5 3 10 10 H 1.08001 * 119.99910 * 31.86526 * 9 7 5 11 11 C 1.38950 * 120.00101 * 211.85920 * 9 7 5 12 12 N 1.31408 * 120.00018 * 6.52473 * 11 9 7 13 13 Si 1.86801 * 119.99886 * 186.52569 * 11 9 7 14 14 H 1.48507 * 109.47310 * 90.00098 * 13 11 9 15 15 H 1.48503 * 109.47074 * 209.99882 * 13 11 9 16 16 H 1.48498 * 109.47395 * 329.99912 * 13 11 9 17 17 C 1.50701 * 109.47471 * 64.25652 * 3 2 1 18 18 C 1.38221 * 120.01001 * 5.88482 * 17 3 2 19 19 C 1.38220 * 120.01956 * 180.02562 * 18 17 3 20 20 C 1.38262 * 120.05807 * 359.97438 * 19 18 17 21 21 C 1.38183 * 120.02368 * 359.97438 * 20 19 18 22 22 C 1.38433 * 120.01149 * 185.90191 * 17 3 2 23 23 F 1.35100 * 120.02956 * 0.02562 * 22 17 3 24 24 H 1.08996 * 109.47301 * 176.93158 * 1 2 3 25 25 H 1.08996 * 109.47017 * 296.92896 * 1 2 3 26 26 H 1.09002 * 109.46981 * 56.92742 * 1 2 3 27 27 H 1.09001 * 109.47237 * 180.02562 * 4 3 2 28 28 H 1.09003 * 109.47650 * 300.00016 * 4 3 2 29 29 H 1.08998 * 109.47423 * 60.00426 * 4 3 2 30 30 H 1.08995 * 109.47306 * 94.33486 * 8 7 5 31 31 H 1.09002 * 109.46898 * 214.33573 * 8 7 5 32 32 H 1.08997 * 109.47003 * 334.33127 * 8 7 5 33 33 H 0.97003 * 120.00097 * 179.97438 * 12 11 9 34 34 H 1.07992 * 119.98838 * 359.97438 * 18 17 3 35 35 H 1.08006 * 119.96899 * 180.02562 * 19 18 17 36 36 H 1.08000 * 119.99177 * 179.72269 * 20 19 18 37 37 H 1.07994 * 120.01507 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4758 2.1016 -1.1923 5 6 3.5089 1.1881 -0.1056 6 8 4.2218 1.9630 0.4966 7 7 4.0571 0.2221 -0.8690 8 6 5.5101 0.0349 -0.8819 9 6 3.2551 -0.5853 -1.6334 10 1 2.3355 -0.1977 -2.0464 11 6 3.6254 -1.9022 -1.8771 12 7 4.6748 -2.4122 -1.2725 13 14 2.6316 -2.9475 -3.0641 14 1 3.1832 -2.7999 -4.4350 15 1 2.7063 -4.3720 -2.6512 16 1 1.2152 -2.5017 -3.0498 17 6 1.6508 2.0155 1.2798 18 6 0.9729 1.3409 2.2777 19 6 0.6427 1.9920 3.4513 20 6 0.9903 3.3184 3.6289 21 6 1.6690 3.9945 2.6331 22 6 1.9992 3.3436 1.4562 23 9 2.6610 4.0042 0.4811 24 1 -0.3634 -1.0261 -0.0550 25 1 -0.3633 0.4654 0.9162 26 1 -0.3633 0.5608 -0.8612 27 1 1.9195 3.0972 -1.1926 28 1 1.7358 1.5881 -2.1180 29 1 0.3919 2.1865 -1.1160 30 1 5.7843 -0.7305 -0.1560 31 1 5.8273 -0.2777 -1.8768 32 1 5.9997 0.9736 -0.6227 33 1 4.9331 -3.3316 -1.4423 34 1 0.7004 0.3050 2.1400 35 1 0.1133 1.4640 4.2307 36 1 0.7278 3.8274 4.5445 37 1 1.9409 5.0304 2.7720 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277437846.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:53 Heat of formation + Delta-G solvation = -66.310480 kcal Electronic energy + Delta-G solvation = -23644.479546 eV Core-core repulsion = 20110.069409 eV Total energy + Delta-G solvation = -3534.410136 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.38170 -39.93082 -38.06310 -36.80695 -34.70662 -31.89407 -31.32320 -30.45737 -29.12560 -26.99277 -26.06655 -24.55450 -23.23209 -22.40693 -21.03143 -19.01924 -17.71784 -17.22303 -16.64129 -15.63794 -15.52224 -15.07872 -14.97709 -14.60479 -14.36457 -14.19604 -13.95053 -13.52195 -13.34376 -12.76970 -12.48439 -12.39177 -12.15027 -11.89566 -11.56741 -11.42462 -11.25497 -11.19732 -11.08272 -10.92418 -10.75301 -10.37412 -10.31050 -10.15103 -9.16993 -8.88847 -8.77495 -8.37336 -8.23233 -7.52193 -6.20631 -3.86121 1.44725 1.50225 3.16869 3.25640 3.28125 3.67135 3.88340 4.18517 4.44134 4.68140 4.72084 4.97222 5.06434 5.16475 5.26313 5.47446 5.55045 5.67087 5.77893 5.78405 5.85424 6.01408 6.08437 6.16370 6.28533 6.36813 6.45697 6.55097 6.59048 6.68704 6.85446 7.04043 7.18843 7.43453 7.59279 7.74819 7.92605 8.48659 9.18918 9.54565 9.95700 10.82493 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023620 B = 0.006879 C = 0.006156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.162148 B = 4069.535295 C = 4547.053637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.322 6.322 3 C 0.159 3.841 4 C -0.182 4.182 5 C 0.477 3.523 6 O -0.594 6.594 7 N -0.426 5.426 8 C 0.117 3.883 9 C -0.308 4.308 10 H 0.098 0.902 11 C 0.039 3.961 12 N -0.877 5.877 13 Si 0.919 3.081 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.269 1.269 17 C -0.123 4.123 18 C -0.084 4.084 19 C -0.143 4.143 20 C -0.096 4.096 21 C -0.168 4.168 22 C 0.142 3.858 23 F -0.125 7.125 24 H 0.083 0.917 25 H 0.045 0.955 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.266 0.734 34 H 0.142 0.858 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.652 6.482 4.456 12.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 O -0.239 6.239 3 C 0.116 3.884 4 C -0.239 4.239 5 C 0.263 3.737 6 O -0.480 6.480 7 N -0.143 5.143 8 C -0.026 4.026 9 C -0.436 4.436 10 H 0.115 0.885 11 C -0.165 4.165 12 N -0.516 5.516 13 Si 0.747 3.253 14 H -0.206 1.206 15 H -0.210 1.210 16 H -0.194 1.194 17 C -0.125 4.125 18 C -0.102 4.102 19 C -0.161 4.161 20 C -0.114 4.114 21 C -0.187 4.187 22 C 0.122 3.878 23 F -0.103 7.103 24 H 0.102 0.898 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.160 0.840 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.011 6.484 4.672 12.044 hybrid contribution -0.560 -0.502 -0.754 1.065 sum -9.571 5.982 3.918 11.947 Atomic orbital electron populations 1.23119 0.83871 1.02443 1.00096 1.88535 1.17338 1.23803 1.94202 1.20110 0.93583 0.84110 0.90624 1.22523 1.00909 1.01721 0.98766 1.19440 0.87252 0.85021 0.82001 1.90569 1.61406 1.46061 1.49988 1.43419 1.06060 1.28014 1.36778 1.21358 0.80793 0.98452 1.01977 1.19584 1.05097 0.92067 1.26861 0.88455 1.25359 0.96685 0.96854 0.97605 1.69959 1.25677 1.15096 1.40860 0.86050 0.80143 0.79150 0.79996 1.20625 1.21033 1.19405 1.20299 1.00856 0.93019 0.98314 1.21139 0.96432 1.00543 0.92055 1.21084 1.02408 0.95011 0.97613 1.20902 0.97746 0.94630 0.98172 1.21055 1.03162 1.01040 0.93405 1.17349 0.93745 0.90027 0.86632 1.91465 1.77992 1.80204 1.60653 0.89843 0.93676 0.94058 0.90499 0.90079 0.92049 0.91937 0.92627 0.94432 0.92394 0.84050 0.85724 0.85599 0.85180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 9.59 101.05 0.97 0.99 16 2 O -0.32 -6.79 6.84 -35.23 -0.24 -7.03 16 3 C 0.16 3.38 0.43 -92.92 -0.04 3.34 16 4 C -0.18 -3.39 7.65 37.16 0.28 -3.11 16 5 C 0.48 12.19 6.47 -10.99 -0.07 12.12 16 6 O -0.59 -16.26 13.75 5.54 0.08 -16.19 16 7 N -0.43 -11.30 2.99 -122.20 -0.37 -11.67 16 8 C 0.12 3.00 8.81 59.85 0.53 3.53 16 9 C -0.31 -8.00 7.25 -14.93 -0.11 -8.10 16 10 H 0.10 2.42 5.01 -52.49 -0.26 2.16 16 11 C 0.04 1.01 5.23 -17.47 -0.09 0.92 16 12 N -0.88 -23.83 10.94 55.50 0.61 -23.23 16 13 Si 0.92 20.06 29.56 -169.99 -5.02 15.03 16 14 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 17 C -0.12 -2.38 4.31 -104.56 -0.45 -2.83 16 18 C -0.08 -1.39 7.68 -39.59 -0.30 -1.69 16 19 C -0.14 -1.95 10.04 -39.58 -0.40 -2.35 16 20 C -0.10 -1.26 10.04 -39.59 -0.40 -1.65 16 21 C -0.17 -2.54 10.03 -39.51 -0.40 -2.94 16 22 C 0.14 2.67 6.18 -39.42 -0.24 2.42 16 23 F -0.12 -2.54 13.25 2.25 0.03 -2.51 16 24 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.05 0.63 4.91 -51.93 -0.25 0.38 16 26 H 0.04 0.60 6.18 -51.93 -0.32 0.28 16 27 H 0.08 1.45 5.87 -51.93 -0.30 1.14 16 28 H 0.08 1.56 6.43 -51.93 -0.33 1.22 16 29 H 0.06 0.96 6.42 -51.93 -0.33 0.63 16 30 H 0.06 1.68 7.24 -51.93 -0.38 1.30 16 31 H 0.05 1.40 7.71 -51.93 -0.40 1.00 16 32 H 0.04 0.92 7.24 -51.93 -0.38 0.55 16 33 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.14 2.26 5.51 -52.49 -0.29 1.97 16 35 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 36 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 295.49 15.07 4.45 4.45 Total: -1.00 -31.17 295.49 -5.26 -36.43 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -4.08 Total: 4.06 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -0.72 Total: 0.65 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.24 Total: -34.90 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.16 Total: -23.22 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.03 Total: -2.51 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.17 -5.26 -36.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277437846.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.883 kcal (2) G-P(sol) polarization free energy of solvation -31.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds