Wall clock time and date at job start Tue Mar 31 2020 05:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99810 * 2 1 4 4 C 1.52996 * 109.46807 * 304.25524 * 3 2 1 5 5 C 1.50700 * 109.46779 * 184.26203 * 3 2 1 6 6 O 1.21297 * 119.99496 * 216.54211 * 5 3 2 7 7 N 1.34770 * 120.00430 * 36.53787 * 5 3 2 8 8 C 1.46502 * 120.00136 * 185.23077 * 7 5 3 9 9 C 1.37097 * 119.99978 * 5.23307 * 7 5 3 10 10 H 1.08001 * 119.99910 * 31.86526 * 9 7 5 11 11 C 1.38950 * 120.00101 * 211.85920 * 9 7 5 12 12 N 1.31408 * 120.00018 * 6.52473 * 11 9 7 13 13 Si 1.86801 * 119.99886 * 186.52569 * 11 9 7 14 14 H 1.48507 * 109.47310 * 90.00098 * 13 11 9 15 15 H 1.48503 * 109.47074 * 209.99882 * 13 11 9 16 16 H 1.48498 * 109.47395 * 329.99912 * 13 11 9 17 17 C 1.50701 * 109.47471 * 64.25652 * 3 2 1 18 18 C 1.38221 * 120.01001 * 5.88482 * 17 3 2 19 19 C 1.38220 * 120.01956 * 180.02562 * 18 17 3 20 20 C 1.38262 * 120.05807 * 359.97438 * 19 18 17 21 21 C 1.38183 * 120.02368 * 359.97438 * 20 19 18 22 22 C 1.38433 * 120.01149 * 185.90191 * 17 3 2 23 23 F 1.35100 * 120.02956 * 0.02562 * 22 17 3 24 24 H 1.08996 * 109.47301 * 176.93158 * 1 2 3 25 25 H 1.08996 * 109.47017 * 296.92896 * 1 2 3 26 26 H 1.09002 * 109.46981 * 56.92742 * 1 2 3 27 27 H 1.09001 * 109.47237 * 180.02562 * 4 3 2 28 28 H 1.09003 * 109.47650 * 300.00016 * 4 3 2 29 29 H 1.08998 * 109.47423 * 60.00426 * 4 3 2 30 30 H 1.08995 * 109.47306 * 94.33486 * 8 7 5 31 31 H 1.09002 * 109.46898 * 214.33573 * 8 7 5 32 32 H 1.08997 * 109.47003 * 334.33127 * 8 7 5 33 33 H 0.97003 * 120.00097 * 179.97438 * 12 11 9 34 34 H 1.07992 * 119.98838 * 359.97438 * 18 17 3 35 35 H 1.08006 * 119.96899 * 180.02562 * 19 18 17 36 36 H 1.08000 * 119.99177 * 179.72269 * 20 19 18 37 37 H 1.07994 * 120.01507 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4758 2.1016 -1.1923 5 6 3.5089 1.1881 -0.1056 6 8 4.2218 1.9630 0.4966 7 7 4.0571 0.2221 -0.8690 8 6 5.5101 0.0349 -0.8819 9 6 3.2551 -0.5853 -1.6334 10 1 2.3355 -0.1977 -2.0464 11 6 3.6254 -1.9022 -1.8771 12 7 4.6748 -2.4122 -1.2725 13 14 2.6316 -2.9475 -3.0641 14 1 3.1832 -2.7999 -4.4350 15 1 2.7063 -4.3720 -2.6512 16 1 1.2152 -2.5017 -3.0498 17 6 1.6508 2.0155 1.2798 18 6 0.9729 1.3409 2.2777 19 6 0.6427 1.9920 3.4513 20 6 0.9903 3.3184 3.6289 21 6 1.6690 3.9945 2.6331 22 6 1.9992 3.3436 1.4562 23 9 2.6610 4.0042 0.4811 24 1 -0.3634 -1.0261 -0.0550 25 1 -0.3633 0.4654 0.9162 26 1 -0.3633 0.5608 -0.8612 27 1 1.9195 3.0972 -1.1926 28 1 1.7358 1.5881 -2.1180 29 1 0.3919 2.1865 -1.1160 30 1 5.7843 -0.7305 -0.1560 31 1 5.8273 -0.2777 -1.8768 32 1 5.9997 0.9736 -0.6227 33 1 4.9331 -3.3316 -1.4423 34 1 0.7004 0.3050 2.1400 35 1 0.1133 1.4640 4.2307 36 1 0.7278 3.8274 4.5445 37 1 1.9409 5.0304 2.7720 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277437846.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:52 Heat of formation + Delta-G solvation = -85.593575 kcal Electronic energy + Delta-G solvation = -23645.315724 eV Core-core repulsion = 20110.069409 eV Total energy + Delta-G solvation = -3535.246314 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.79024 -41.48653 -39.63384 -38.32710 -36.70386 -33.35177 -33.31143 -31.65878 -30.46259 -28.58512 -27.85401 -26.45294 -24.61953 -23.62034 -22.55975 -20.84663 -19.44618 -18.63273 -18.17127 -17.17874 -17.03399 -16.55256 -16.40784 -16.25865 -16.06660 -15.72021 -15.49249 -15.14876 -14.97144 -14.21859 -14.07406 -13.78561 -13.57551 -13.33447 -13.21433 -13.05641 -12.94492 -12.79715 -12.68854 -12.46525 -12.37318 -12.15101 -12.02338 -11.59676 -11.00338 -10.48394 -10.42636 -9.79635 -9.60004 -9.49536 -8.18049 -5.89768 0.23795 0.30630 1.43861 1.47876 1.59602 1.86434 2.35305 2.62333 2.87160 3.02109 3.32729 3.46969 3.56656 3.90680 4.00067 4.17335 4.20301 4.42751 4.43593 4.55585 4.60549 4.62842 4.69478 4.86019 4.89365 4.92243 4.96592 5.08035 5.20202 5.26110 5.28904 5.42585 5.49180 5.59814 5.93208 6.01616 6.32087 6.49262 7.19390 7.55779 7.96651 8.86414 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023620 B = 0.006879 C = 0.006156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.162148 B = 4069.535295 C = 4547.053637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.353 6.353 3 C 0.165 3.835 4 C -0.174 4.174 5 C 0.463 3.537 6 O -0.621 6.621 7 N -0.445 5.445 8 C 0.129 3.871 9 C -0.315 4.315 10 H 0.106 0.894 11 C -0.008 4.008 12 N -0.912 5.912 13 Si 0.987 3.013 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.254 1.254 17 C -0.152 4.152 18 C -0.097 4.097 19 C -0.131 4.131 20 C -0.082 4.082 21 C -0.168 4.168 22 C 0.105 3.895 23 F -0.146 7.146 24 H 0.097 0.903 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.037 0.963 33 H 0.266 0.734 34 H 0.143 0.857 35 H 0.164 0.836 36 H 0.172 0.828 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.423 6.711 5.664 15.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.272 6.272 3 C 0.122 3.878 4 C -0.231 4.231 5 C 0.251 3.749 6 O -0.510 6.510 7 N -0.161 5.161 8 C -0.014 4.014 9 C -0.442 4.442 10 H 0.124 0.876 11 C -0.208 4.208 12 N -0.552 5.552 13 Si 0.810 3.190 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.178 1.178 17 C -0.153 4.153 18 C -0.115 4.115 19 C -0.149 4.149 20 C -0.100 4.100 21 C -0.187 4.187 22 C 0.086 3.914 23 F -0.124 7.124 24 H 0.115 0.885 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.160 0.840 35 H 0.181 0.819 36 H 0.189 0.811 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.804 6.729 5.878 14.804 hybrid contribution 0.291 -0.522 -0.997 1.162 sum -11.513 6.207 4.881 13.960 Atomic orbital electron populations 1.23356 0.81168 1.03815 1.01627 1.88438 1.20274 1.23870 1.94580 1.19835 0.90401 0.84783 0.92815 1.22452 1.02672 1.00651 0.97329 1.20341 0.89716 0.83911 0.80920 1.90521 1.62957 1.46767 1.50725 1.43714 1.06167 1.28703 1.37548 1.21142 0.81484 0.97670 1.01112 1.19873 1.05299 0.92306 1.26765 0.87630 1.26238 0.97654 0.97837 0.99119 1.70094 1.27267 1.15415 1.42401 0.85020 0.79340 0.76955 0.77644 1.20125 1.21220 1.17791 1.20288 1.03114 0.93528 0.98404 1.21301 0.96761 1.00723 0.92689 1.21552 1.00992 0.95353 0.97004 1.21446 0.95400 0.94375 0.98788 1.21432 1.02650 1.02191 0.92406 1.17809 0.95290 0.90500 0.87796 1.91403 1.78774 1.80527 1.61727 0.88467 0.91708 0.92976 0.91294 0.91256 0.89040 0.93802 0.92928 0.94410 0.92428 0.83970 0.81885 0.81095 0.83062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.12 9.59 113.37 1.09 0.97 16 2 O -0.35 -14.76 6.84 -148.98 -1.02 -15.77 16 3 C 0.16 7.03 0.43 -12.29 -0.01 7.03 16 4 C -0.17 -6.48 7.65 71.98 0.55 -5.93 16 5 C 0.46 24.40 6.47 87.66 0.57 24.97 16 6 O -0.62 -35.32 13.75 -3.08 -0.04 -35.37 16 7 N -0.44 -24.33 2.99 -658.90 -1.97 -26.30 16 8 C 0.13 6.94 8.81 127.77 1.13 8.06 16 9 C -0.31 -16.56 7.25 84.04 0.61 -15.95 16 10 H 0.11 5.27 5.01 -2.91 -0.01 5.25 16 11 C -0.01 -0.42 5.23 84.93 0.44 0.02 16 12 N -0.91 -50.61 10.94 21.66 0.24 -50.37 16 13 Si 0.99 40.85 29.56 68.60 2.03 42.88 16 14 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 15 H -0.29 -11.86 7.11 99.48 0.71 -11.15 16 16 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 17 C -0.15 -5.76 4.31 -19.82 -0.09 -5.85 16 18 C -0.10 -3.01 7.68 22.26 0.17 -2.84 16 19 C -0.13 -3.03 10.04 22.27 0.22 -2.81 16 20 C -0.08 -1.78 10.04 22.26 0.22 -1.56 16 21 C -0.17 -4.69 10.03 22.31 0.22 -4.46 16 22 C 0.11 3.90 6.18 22.37 0.14 4.04 16 23 F -0.15 -6.08 13.25 44.97 0.60 -5.49 16 24 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 25 H 0.06 1.66 4.91 -2.39 -0.01 1.64 16 26 H 0.05 1.41 6.18 -2.39 -0.01 1.39 16 27 H 0.07 2.66 5.87 -2.39 -0.01 2.64 16 28 H 0.07 2.68 6.43 -2.39 -0.02 2.67 16 29 H 0.09 2.77 6.42 -2.39 -0.02 2.76 16 30 H 0.04 2.47 7.24 -2.39 -0.02 2.46 16 31 H 0.05 2.76 7.71 -2.39 -0.02 2.75 16 32 H 0.04 1.96 7.24 -2.39 -0.02 1.94 16 33 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 34 H 0.14 4.29 5.51 -2.91 -0.02 4.27 16 35 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 36 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 37 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -70.02 295.49 6.21 -63.81 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 1.11 Total: 20.93 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 5.27 Total: 5.68 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -1.73 Total: -76.67 kcal Atomic # 8 Polarization: -50.08 SS G_CDS: -1.06 Total: -51.14 kcal Atomic # 9 Polarization: -6.08 SS G_CDS: 0.60 Total: -5.49 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -70.02 6.21 -63.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277437846.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.781 kcal (2) G-P(sol) polarization free energy of solvation -70.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds