Wall clock time and date at job start Tue Mar 31 2020 05:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00103 * 2 1 4 4 H 1.48500 * 109.47232 * 95.21394 * 3 2 1 5 5 H 1.48498 * 109.47403 * 335.20679 * 3 2 1 6 6 H 1.48506 * 109.46850 * 215.20518 * 3 2 1 7 7 C 1.37880 * 119.99409 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 9.82623 * 7 2 1 9 9 C 1.50703 * 119.99783 * 189.81059 * 7 2 1 10 10 N 1.46901 * 109.46710 * 62.03106 * 9 7 2 11 11 C 1.46903 * 110.99987 * 196.92618 * 10 9 7 12 12 C 1.50700 * 109.47305 * 75.87987 * 11 10 9 13 13 C 1.34513 * 125.79035 * 87.19477 * 12 11 10 14 14 C 1.41380 * 106.83862 * 179.88986 * 13 12 11 15 15 C 1.34511 * 106.84238 * 0.37988 * 14 13 12 16 16 O 1.34299 * 108.42029 * 359.76499 * 15 14 13 17 17 C 1.46895 * 111.00398 * 72.97117 * 10 9 7 18 18 C 1.53006 * 109.47279 * 282.93192 * 17 10 9 19 19 H 1.08998 * 108.82779 * 61.77972 * 18 17 10 20 20 C 1.52329 * 108.86924 * 180.31146 * 18 17 10 21 21 C 1.54261 * 112.58345 * 120.81832 * 20 18 17 22 22 S 1.83947 * 102.58286 * 24.52962 * 21 20 18 23 23 C 1.54257 * 108.86581 * 303.25220 * 18 17 10 24 24 H 0.97009 * 119.99529 * 5.02058 * 1 2 3 25 25 H 1.09003 * 109.47025 * 182.02729 * 9 7 2 26 26 H 1.09004 * 109.47392 * 302.03202 * 9 7 2 27 27 H 1.09001 * 109.47010 * 195.88135 * 11 10 9 28 28 H 1.09004 * 109.46978 * 315.87917 * 11 10 9 29 29 H 1.08001 * 126.57882 * 0.03134 * 13 12 11 30 30 H 1.08001 * 126.57326 * 180.12181 * 14 13 12 31 31 H 1.08000 * 125.78825 * 179.79404 * 15 14 13 32 32 H 1.09008 * 109.47232 * 42.92665 * 17 10 9 33 33 H 1.08998 * 109.48091 * 162.92907 * 17 10 9 34 34 H 1.09000 * 108.87024 * 241.63446 * 20 18 17 35 35 H 1.08997 * 108.87193 * 0.14459 * 20 18 17 36 36 H 1.09007 * 110.78760 * 142.80416 * 21 20 18 37 37 H 1.09002 * 110.78913 * 266.05950 * 21 20 18 38 38 H 1.09003 * 110.78842 * 332.92573 * 23 18 17 39 39 H 1.09000 * 110.78488 * 96.37820 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6069 1.9828 1.3943 5 1 1.3960 2.6819 -0.5871 6 1 3.4874 1.4743 -0.8072 7 6 2.0044 -1.1941 0.0005 8 1 1.4762 -2.1226 -0.1587 9 6 3.4949 -1.2037 0.2229 10 7 3.7945 -0.6632 1.5556 11 6 5.2091 -0.2817 1.6632 12 6 5.4373 1.0139 0.9282 13 6 5.2855 2.2475 1.4427 14 6 5.6044 3.1627 0.4134 15 6 5.9238 2.4337 -0.6710 16 8 5.8209 1.1329 -0.3533 17 6 3.4261 -1.6206 2.6071 18 6 1.9095 -1.5985 2.8084 19 1 1.4270 -1.9059 1.8806 20 6 1.5437 -2.5895 3.9059 21 6 0.8211 -1.9192 5.0925 22 16 0.0832 -0.4224 4.3187 23 6 1.4719 -0.1580 3.1447 24 1 -0.4850 0.8369 -0.0735 25 1 3.8661 -2.2262 0.1537 26 1 3.9795 -0.5891 -0.5358 27 1 5.4723 -0.1550 2.7133 28 1 5.8303 -1.0626 1.2245 29 1 4.9809 2.4919 2.4497 30 1 5.5899 4.2403 0.4831 31 1 6.2143 2.8277 -1.6337 32 1 3.7388 -2.6224 2.3122 33 1 3.9203 -1.3453 3.5388 34 1 0.8939 -3.3571 3.4855 35 1 2.4550 -3.0621 4.2722 36 1 0.0440 -2.5718 5.4909 37 1 1.5310 -1.6449 5.8728 38 1 2.2834 0.3913 3.6221 39 1 1.1265 0.3601 2.2501 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279517265.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:09 Heat of formation + Delta-G solvation = 31.072678 kcal Electronic energy + Delta-G solvation = -21325.535931 eV Core-core repulsion = 18361.561821 eV Total energy + Delta-G solvation = -2963.974110 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.16279 -37.89790 -34.91448 -32.79379 -32.38412 -30.41311 -29.12270 -27.75643 -26.04850 -24.25975 -22.81164 -21.37200 -20.86587 -19.85973 -18.93967 -17.09843 -16.73509 -16.00045 -15.87424 -15.28463 -14.65362 -14.44701 -14.05732 -13.81455 -13.43015 -13.09162 -12.79552 -12.42802 -12.38969 -12.27978 -11.78497 -11.70482 -11.54229 -11.37525 -11.20069 -10.69953 -10.55433 -10.29293 -10.04826 -9.74402 -9.62370 -9.41067 -9.28108 -9.17549 -8.35631 -8.04975 -7.43347 -7.05031 -6.05553 -4.08072 2.14030 2.55607 3.00636 3.08850 3.39380 3.57108 3.58903 3.68469 4.59626 4.71235 5.07342 5.18508 5.23585 5.31627 5.40416 5.42820 5.55516 5.68127 5.72376 5.74082 5.85231 6.00950 6.07748 6.17034 6.18729 6.26488 6.31419 6.47105 6.48676 6.51366 6.70712 6.87103 6.90157 7.04378 7.46667 7.56797 7.60774 7.84964 8.06310 8.49448 8.90454 9.58694 11.00770 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019918 B = 0.007430 C = 0.006800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.412951 B = 3767.580246 C = 4116.597639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.093 3.907 3 Si 0.892 3.108 4 H -0.261 1.261 5 H -0.317 1.317 6 H -0.263 1.263 7 C -0.519 4.519 8 H 0.072 0.928 9 C 0.149 3.851 10 N -0.534 5.534 11 C 0.124 3.876 12 C 0.013 3.987 13 C -0.203 4.203 14 C -0.221 4.221 15 C -0.046 4.046 16 O -0.171 6.171 17 C 0.084 3.916 18 C -0.098 4.098 19 H 0.137 0.863 20 C -0.119 4.119 21 C -0.063 4.063 22 S -0.338 6.338 23 C -0.018 4.018 24 H 0.263 0.737 25 H 0.005 0.995 26 H 0.038 0.962 27 H 0.090 0.910 28 H 0.043 0.957 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.195 0.805 32 H 0.030 0.970 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.889 0.015 5.995 11.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.112 4.112 3 Si 0.721 3.279 4 H -0.186 1.186 5 H -0.245 1.245 6 H -0.188 1.188 7 C -0.557 4.557 8 H 0.090 0.910 9 C 0.025 3.975 10 N -0.261 5.261 11 C -0.003 4.003 12 C -0.038 4.038 13 C -0.223 4.223 14 C -0.240 4.240 15 C -0.114 4.114 16 O -0.067 6.067 17 C -0.045 4.045 18 C -0.118 4.118 19 H 0.154 0.846 20 C -0.159 4.159 21 C -0.211 4.211 22 S -0.111 6.111 23 C -0.165 4.165 24 H 0.073 0.927 25 H 0.024 0.976 26 H 0.056 0.944 27 H 0.108 0.892 28 H 0.062 0.938 29 H 0.160 0.840 30 H 0.159 0.841 31 H 0.211 0.789 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.446 0.876 6.139 10.478 hybrid contribution 1.748 0.062 -0.283 1.772 sum 10.194 0.938 5.856 11.794 Atomic orbital electron populations 1.70023 1.06481 1.27669 1.47735 1.24901 0.94336 0.99475 0.92534 0.86717 0.79392 0.81996 0.79786 1.18605 1.24548 1.18844 1.20763 0.90132 0.94754 1.50003 0.91044 1.20366 0.98324 0.93457 0.85380 1.62643 1.13817 1.43023 1.06581 1.20532 0.92463 0.89895 0.97451 1.22350 1.02014 0.97434 0.82035 1.21429 1.07827 0.91778 1.01297 1.21727 1.07875 1.00369 0.94021 1.23792 1.06616 0.80646 1.00326 1.84037 1.67139 1.27735 1.27777 1.22041 0.95779 0.93385 0.93263 1.22079 0.96029 0.92230 1.01490 0.84555 1.22109 0.99863 0.99602 0.94307 1.24010 1.01203 0.96366 0.99572 1.87812 1.36557 1.38501 1.48270 1.24216 0.93436 0.99886 0.99011 0.92718 0.97637 0.94382 0.89173 0.93843 0.84035 0.84071 0.78856 0.95172 0.93067 0.91194 0.91924 0.88941 0.90440 0.91293 0.85792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.57 13.74 55.43 0.76 -24.80 16 2 C 0.09 2.50 3.44 -17.82 -0.06 2.44 16 3 Si 0.89 22.36 21.67 -169.99 -3.68 18.67 16 4 H -0.26 -6.45 6.56 56.52 0.37 -6.08 16 5 H -0.32 -8.42 7.11 56.52 0.40 -8.02 16 6 H -0.26 -6.45 4.42 56.52 0.25 -6.20 16 7 C -0.52 -13.46 6.59 -34.44 -0.23 -13.68 16 8 H 0.07 2.02 7.88 -52.49 -0.41 1.61 16 9 C 0.15 3.32 4.23 -4.97 -0.02 3.30 16 10 N -0.53 -10.44 2.28 -237.50 -0.54 -10.99 16 11 C 0.12 2.09 5.53 -4.97 -0.03 2.06 16 12 C 0.01 0.23 4.22 -35.63 -0.15 0.08 16 13 C -0.20 -3.57 8.83 -39.70 -0.35 -3.92 16 14 C -0.22 -3.55 10.62 -39.70 -0.42 -3.97 16 15 C -0.05 -0.73 11.22 29.41 0.33 -0.40 16 16 O -0.17 -3.19 9.29 5.72 0.05 -3.14 16 17 C 0.08 1.46 3.90 -3.82 -0.01 1.45 16 18 C -0.10 -1.89 2.24 -90.30 -0.20 -2.09 16 19 H 0.14 3.20 5.06 -51.93 -0.26 2.94 16 20 C -0.12 -1.88 5.98 -26.41 -0.16 -2.04 16 21 C -0.06 -0.96 7.46 37.82 0.28 -0.68 16 22 S -0.34 -6.71 23.26 -107.50 -2.50 -9.21 16 23 C -0.02 -0.38 6.24 37.82 0.24 -0.14 16 24 H 0.26 7.46 8.32 -40.82 -0.34 7.12 16 25 H 0.01 0.12 7.78 -51.93 -0.40 -0.29 16 26 H 0.04 0.90 5.60 -51.93 -0.29 0.61 16 27 H 0.09 1.28 7.58 -51.93 -0.39 0.88 16 28 H 0.04 0.68 8.00 -51.93 -0.42 0.27 16 29 H 0.14 2.33 8.06 -52.49 -0.42 1.90 16 30 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 31 H 0.19 2.29 8.06 -52.49 -0.42 1.87 16 32 H 0.03 0.50 7.74 -51.92 -0.40 0.10 16 33 H 0.05 0.77 7.57 -51.93 -0.39 0.38 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.83 7.51 -51.93 -0.39 0.44 16 36 H 0.09 1.25 8.14 -51.92 -0.42 0.83 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.07 1.39 7.86 -51.93 -0.41 0.98 16 39 H 0.12 3.06 4.05 -51.93 -0.21 2.85 16 LS Contribution 302.39 15.07 4.56 4.56 Total: -1.00 -29.56 302.39 -7.98 -37.54 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -5.84 Total: 4.96 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -0.79 Total: -17.60 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.22 Total: -35.79 kcal Atomic # 8 Polarization: -3.19 SS G_CDS: 0.05 Total: -3.14 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -3.68 Total: 18.67 kcal Atomic # 16 Polarization: -6.71 SS G_CDS: -2.50 Total: -9.21 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.56 -7.98 -37.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279517265.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.616 kcal (2) G-P(sol) polarization free energy of solvation -29.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds