Wall clock time and date at job start Tue Mar 31 2020 05:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00103 * 2 1 4 4 H 1.48500 * 109.47232 * 95.21394 * 3 2 1 5 5 H 1.48498 * 109.47403 * 335.20679 * 3 2 1 6 6 H 1.48506 * 109.46850 * 215.20518 * 3 2 1 7 7 C 1.37880 * 119.99409 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 9.82623 * 7 2 1 9 9 C 1.50703 * 119.99783 * 189.81059 * 7 2 1 10 10 N 1.46901 * 109.46710 * 62.03106 * 9 7 2 11 11 C 1.46903 * 110.99987 * 196.92618 * 10 9 7 12 12 C 1.50700 * 109.47305 * 75.87987 * 11 10 9 13 13 C 1.34513 * 125.79035 * 87.19477 * 12 11 10 14 14 C 1.41380 * 106.83862 * 179.88986 * 13 12 11 15 15 C 1.34511 * 106.84238 * 0.37988 * 14 13 12 16 16 O 1.34299 * 108.42029 * 359.76499 * 15 14 13 17 17 C 1.46895 * 111.00398 * 72.97117 * 10 9 7 18 18 C 1.53006 * 109.47279 * 282.93192 * 17 10 9 19 19 H 1.08998 * 108.82779 * 61.77972 * 18 17 10 20 20 C 1.52329 * 108.86924 * 180.31146 * 18 17 10 21 21 C 1.54261 * 112.58345 * 120.81832 * 20 18 17 22 22 S 1.83947 * 102.58286 * 24.52962 * 21 20 18 23 23 C 1.54257 * 108.86581 * 303.25220 * 18 17 10 24 24 H 0.97009 * 119.99529 * 5.02058 * 1 2 3 25 25 H 1.09003 * 109.47025 * 182.02729 * 9 7 2 26 26 H 1.09004 * 109.47392 * 302.03202 * 9 7 2 27 27 H 1.09001 * 109.47010 * 195.88135 * 11 10 9 28 28 H 1.09004 * 109.46978 * 315.87917 * 11 10 9 29 29 H 1.08001 * 126.57882 * 0.03134 * 13 12 11 30 30 H 1.08001 * 126.57326 * 180.12181 * 14 13 12 31 31 H 1.08000 * 125.78825 * 179.79404 * 15 14 13 32 32 H 1.09008 * 109.47232 * 42.92665 * 17 10 9 33 33 H 1.08998 * 109.48091 * 162.92907 * 17 10 9 34 34 H 1.09000 * 108.87024 * 241.63446 * 20 18 17 35 35 H 1.08997 * 108.87193 * 0.14459 * 20 18 17 36 36 H 1.09007 * 110.78760 * 142.80416 * 21 20 18 37 37 H 1.09002 * 110.78913 * 266.05950 * 21 20 18 38 38 H 1.09003 * 110.78842 * 332.92573 * 23 18 17 39 39 H 1.09000 * 110.78488 * 96.37820 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6069 1.9828 1.3943 5 1 1.3960 2.6819 -0.5871 6 1 3.4874 1.4743 -0.8072 7 6 2.0044 -1.1941 0.0005 8 1 1.4762 -2.1226 -0.1587 9 6 3.4949 -1.2037 0.2229 10 7 3.7945 -0.6632 1.5556 11 6 5.2091 -0.2817 1.6632 12 6 5.4373 1.0139 0.9282 13 6 5.2855 2.2475 1.4427 14 6 5.6044 3.1627 0.4134 15 6 5.9238 2.4337 -0.6710 16 8 5.8209 1.1329 -0.3533 17 6 3.4261 -1.6206 2.6071 18 6 1.9095 -1.5985 2.8084 19 1 1.4270 -1.9059 1.8806 20 6 1.5437 -2.5895 3.9059 21 6 0.8211 -1.9192 5.0925 22 16 0.0832 -0.4224 4.3187 23 6 1.4719 -0.1580 3.1447 24 1 -0.4850 0.8369 -0.0735 25 1 3.8661 -2.2262 0.1537 26 1 3.9795 -0.5891 -0.5358 27 1 5.4723 -0.1550 2.7133 28 1 5.8303 -1.0626 1.2245 29 1 4.9809 2.4919 2.4497 30 1 5.5899 4.2403 0.4831 31 1 6.2143 2.8277 -1.6337 32 1 3.7388 -2.6224 2.3122 33 1 3.9203 -1.3453 3.5388 34 1 0.8939 -3.3571 3.4855 35 1 2.4550 -3.0621 4.2722 36 1 0.0440 -2.5718 5.4909 37 1 1.5310 -1.6449 5.8728 38 1 2.2834 0.3913 3.6221 39 1 1.1265 0.3601 2.2501 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279517265.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:08 Heat of formation + Delta-G solvation = 12.753191 kcal Electronic energy + Delta-G solvation = -21326.330323 eV Core-core repulsion = 18361.561821 eV Total energy + Delta-G solvation = -2964.768502 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.43871 -39.40884 -36.33044 -34.65966 -33.81493 -31.76942 -30.63601 -29.44747 -27.48409 -25.65234 -24.46837 -22.68930 -22.38130 -21.19129 -20.38334 -18.85868 -18.18491 -17.50081 -17.36736 -16.71012 -16.41402 -15.86540 -15.52227 -15.30582 -14.99365 -14.55376 -14.48559 -13.84529 -13.69769 -13.59362 -13.35373 -13.26493 -13.07774 -12.82808 -12.58329 -12.20168 -12.15947 -11.95719 -11.83293 -11.67460 -11.29238 -11.12255 -10.73521 -10.66624 -10.37669 -9.34786 -8.94501 -8.60513 -8.17835 -6.19597 0.86197 1.16012 1.48724 1.55461 1.60790 1.61494 1.76001 2.23138 2.52584 3.05216 3.52941 3.85338 3.89622 4.02214 4.13815 4.19854 4.23873 4.38450 4.45949 4.48638 4.54666 4.66450 4.75251 4.81697 4.84814 4.94709 4.96117 5.04054 5.07768 5.12393 5.21465 5.28009 5.45060 5.61785 5.67070 5.88231 6.14174 6.28260 6.41604 6.59958 6.82017 7.48875 8.91035 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019918 B = 0.007430 C = 0.006800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.412951 B = 3767.580246 C = 4116.597639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.061 3.939 3 Si 0.945 3.055 4 H -0.256 1.256 5 H -0.342 1.342 6 H -0.254 1.254 7 C -0.505 4.505 8 H 0.035 0.965 9 C 0.163 3.837 10 N -0.549 5.549 11 C 0.126 3.874 12 C -0.011 4.011 13 C -0.214 4.214 14 C -0.233 4.233 15 C -0.051 4.051 16 O -0.192 6.192 17 C 0.086 3.914 18 C -0.095 4.095 19 H 0.087 0.913 20 C -0.116 4.116 21 C -0.039 4.039 22 S -0.401 6.401 23 C -0.011 4.011 24 H 0.255 0.745 25 H 0.014 0.986 26 H 0.027 0.973 27 H 0.122 0.878 28 H 0.056 0.944 29 H 0.149 0.851 30 H 0.165 0.835 31 H 0.229 0.771 32 H 0.042 0.958 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.541 -0.387 7.870 14.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.139 4.139 3 Si 0.775 3.225 4 H -0.180 1.180 5 H -0.274 1.274 6 H -0.178 1.178 7 C -0.543 4.543 8 H 0.053 0.947 9 C 0.038 3.962 10 N -0.275 5.275 11 C -0.001 4.001 12 C -0.062 4.062 13 C -0.234 4.234 14 C -0.252 4.252 15 C -0.118 4.118 16 O -0.089 6.089 17 C -0.043 4.043 18 C -0.115 4.115 19 H 0.105 0.895 20 C -0.155 4.155 21 C -0.187 4.187 22 S -0.175 6.175 23 C -0.158 4.158 24 H 0.064 0.936 25 H 0.032 0.968 26 H 0.045 0.955 27 H 0.140 0.860 28 H 0.074 0.926 29 H 0.167 0.833 30 H 0.183 0.817 31 H 0.246 0.754 32 H 0.060 0.940 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.119 0.881 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.096 0.904 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.131 0.456 8.029 13.732 hybrid contribution 0.948 0.134 -0.853 1.282 sum 12.079 0.590 7.176 14.062 Atomic orbital electron populations 1.70142 1.07974 1.27487 1.50876 1.25296 0.94378 1.01533 0.92683 0.85915 0.78057 0.78767 0.79751 1.18019 1.27372 1.17817 1.20850 0.92061 0.92935 1.48473 0.94679 1.20048 0.95259 0.93898 0.87011 1.62213 1.16411 1.43553 1.05345 1.20676 0.90333 0.89723 0.99406 1.22664 1.03065 0.98216 0.82230 1.21724 1.07551 0.92130 1.02023 1.22110 1.07717 1.01643 0.93719 1.24599 1.05581 0.79817 1.01806 1.84027 1.67555 1.29105 1.28169 1.22111 0.94457 0.93637 0.94053 1.21900 0.97169 0.91804 1.00663 0.89470 1.22020 1.01565 0.98403 0.93490 1.24168 1.01810 0.93230 0.99465 1.88004 1.38105 1.42293 1.49086 1.24019 0.93461 1.00767 0.97581 0.93580 0.96812 0.95516 0.85973 0.92573 0.83327 0.81744 0.75438 0.93955 0.89410 0.91821 0.88123 0.86935 0.87456 0.90420 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.25 13.74 21.45 0.29 -55.95 16 2 C 0.06 3.42 3.44 84.66 0.29 3.72 16 3 Si 0.94 47.36 21.67 68.60 1.49 48.85 16 4 H -0.26 -12.40 6.56 99.48 0.65 -11.75 16 5 H -0.34 -18.51 7.11 99.48 0.71 -17.80 16 6 H -0.25 -12.12 4.42 99.48 0.44 -11.68 16 7 C -0.51 -26.84 6.59 25.60 0.17 -26.67 16 8 H 0.04 2.08 7.88 -2.91 -0.02 2.06 16 9 C 0.16 7.14 4.23 85.56 0.36 7.50 16 10 N -0.55 -20.20 2.28 -905.32 -2.06 -22.26 16 11 C 0.13 3.79 5.53 85.56 0.47 4.26 16 12 C -0.01 -0.38 4.22 24.83 0.10 -0.28 16 13 C -0.21 -6.98 8.83 22.19 0.20 -6.79 16 14 C -0.23 -6.89 10.62 22.19 0.24 -6.65 16 15 C -0.05 -1.49 11.22 66.97 0.75 -0.74 16 16 O -0.19 -6.75 9.29 -2.44 -0.02 -6.77 16 17 C 0.09 2.69 3.90 86.31 0.34 3.03 16 18 C -0.09 -3.51 2.24 -10.59 -0.02 -3.54 16 19 H 0.09 4.17 5.06 -2.39 -0.01 4.15 16 20 C -0.12 -3.27 5.98 30.80 0.18 -3.09 16 21 C -0.04 -1.05 7.46 72.41 0.54 -0.51 16 22 S -0.40 -15.71 23.26 -56.49 -1.31 -17.02 16 23 C -0.01 -0.44 6.24 72.41 0.45 0.01 16 24 H 0.26 15.29 8.32 -92.70 -0.77 14.52 16 25 H 0.01 0.57 7.78 -2.39 -0.02 0.55 16 26 H 0.03 1.24 5.60 -2.39 -0.01 1.22 16 27 H 0.12 2.87 7.58 -2.39 -0.02 2.85 16 28 H 0.06 1.56 8.00 -2.39 -0.02 1.54 16 29 H 0.15 4.50 8.06 -2.91 -0.02 4.47 16 30 H 0.16 3.92 8.06 -2.91 -0.02 3.90 16 31 H 0.23 4.66 8.06 -2.91 -0.02 4.64 16 32 H 0.04 1.25 7.74 -2.38 -0.02 1.23 16 33 H 0.09 2.17 7.57 -2.39 -0.02 2.15 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 35 H 0.10 2.14 7.51 -2.39 -0.02 2.12 16 36 H 0.11 2.61 8.14 -2.38 -0.02 2.59 16 37 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.08 2.99 7.86 -2.39 -0.02 2.97 16 39 H 0.08 4.23 4.05 -2.39 -0.01 4.22 16 Total: -1.00 -67.94 302.39 3.16 -64.78 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.71 Total: 18.13 kcal Atomic # 6 Polarization: -33.82 SS G_CDS: 4.07 Total: -29.74 kcal Atomic # 7 Polarization: -76.45 SS G_CDS: -1.77 Total: -78.21 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.02 Total: -6.77 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 1.49 Total: 48.85 kcal Atomic # 16 Polarization: -15.71 SS G_CDS: -1.31 Total: -17.02 kcal Total: -67.94 3.16 -64.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279517265.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.531 kcal (2) G-P(sol) polarization free energy of solvation -67.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds