Wall clock time and date at job start Tue Mar 31 2020 05:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00009 * 2 1 4 4 H 1.48494 * 109.47314 * 274.99675 * 3 2 1 5 5 H 1.48497 * 109.46838 * 35.00089 * 3 2 1 6 6 H 1.48505 * 109.46796 * 154.99606 * 3 2 1 7 7 C 1.37880 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99949 * 185.10598 * 7 2 1 9 9 C 1.50698 * 119.99974 * 5.10679 * 7 2 1 10 10 N 1.46901 * 109.46977 * 185.07909 * 9 7 2 11 11 C 1.46893 * 111.00007 * 196.14018 * 10 9 7 12 12 C 1.50711 * 109.47082 * 168.47523 * 11 10 9 13 13 C 1.34507 * 125.78718 * 97.87471 * 12 11 10 14 14 C 1.41386 * 106.83890 * 179.73673 * 13 12 11 15 15 C 1.34518 * 106.83913 * 0.02562 * 14 13 12 16 16 O 1.34295 * 108.42061 * 359.97438 * 15 14 13 17 17 C 1.46905 * 110.99880 * 72.18474 * 10 9 7 18 18 C 1.53003 * 109.47313 * 211.17009 * 17 10 9 19 19 H 1.09005 * 109.59493 * 306.81279 * 18 17 10 20 20 C 1.52934 * 109.60479 * 186.49398 * 18 17 10 21 21 C 1.53705 * 112.49133 * 209.96940 * 20 18 17 22 22 S 1.83400 * 104.96785 * 2.82307 * 21 20 18 23 23 C 1.55151 * 109.60194 * 66.95332 * 18 17 10 24 24 H 0.97006 * 120.00179 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47393 * 65.08062 * 9 7 2 26 26 H 1.08994 * 109.47033 * 305.07554 * 9 7 2 27 27 H 1.08993 * 109.47202 * 48.47583 * 11 10 9 28 28 H 1.08998 * 109.47356 * 288.47417 * 11 10 9 29 29 H 1.07999 * 126.58417 * 359.77423 * 13 12 11 30 30 H 1.08003 * 126.58044 * 179.97438 * 14 13 12 31 31 H 1.08002 * 125.78677 * 179.97438 * 15 14 13 32 32 H 1.09001 * 109.47280 * 331.17048 * 17 10 9 33 33 H 1.08997 * 109.47111 * 91.17308 * 17 10 9 34 34 H 1.09006 * 108.88547 * 330.76207 * 20 18 17 35 35 H 1.08994 * 108.89325 * 89.31328 * 20 18 17 36 36 H 1.09003 * 110.34290 * 121.69493 * 21 20 18 37 37 H 1.09003 * 110.34176 * 243.95044 * 21 20 18 38 38 H 1.09004 * 111.12946 * 279.28043 * 23 18 17 39 39 H 1.08998 * 111.13078 * 43.45901 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3910 2.1074 -1.3947 5 1 1.5034 2.6198 0.8031 6 1 3.5955 1.4119 0.5918 7 6 2.0045 -1.1941 -0.0005 8 1 3.0813 -1.1960 0.0827 9 6 1.2554 -2.4965 -0.1173 10 7 2.1949 -3.6164 0.0280 11 6 1.5977 -4.8701 -0.4510 12 6 2.6658 -5.9284 -0.5532 13 6 2.9252 -6.8755 0.3660 14 6 3.9943 -7.6523 -0.1368 15 6 4.3245 -7.1330 -1.3329 16 8 3.5164 -6.0892 -1.5801 17 6 2.6475 -3.7467 1.4195 18 6 4.0747 -4.2977 1.4422 19 1 4.1213 -5.2163 0.8572 20 6 4.4903 -4.5868 2.8853 21 6 6.0030 -4.4256 3.1051 22 16 6.6579 -3.8530 1.4905 23 6 5.0467 -3.2503 0.8378 24 1 -0.4851 0.8401 0.0004 25 1 0.7724 -2.5517 -1.0928 26 1 0.4996 -2.5524 0.6661 27 1 1.1514 -4.7084 -1.4321 28 1 0.8285 -5.1967 0.2488 29 1 2.4146 -7.0161 1.3071 30 1 4.4575 -8.4995 0.3471 31 1 5.1068 -7.4942 -1.9841 32 1 2.6278 -2.7691 1.9011 33 1 1.9864 -4.4286 1.9543 34 1 3.9624 -3.9016 3.5485 35 1 4.2063 -5.6087 3.1364 36 1 6.1965 -3.6816 3.8778 37 1 6.4502 -5.3815 3.3779 38 1 5.0283 -3.2799 -0.2517 39 1 4.8235 -2.2488 1.2057 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279517267.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:11 Heat of formation + Delta-G solvation = 17.533703 kcal Electronic energy + Delta-G solvation = -20743.697734 eV Core-core repulsion = 17779.136530 eV Total energy + Delta-G solvation = -2964.561204 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.36838 -37.81354 -35.14059 -32.91024 -32.52853 -30.35685 -29.60706 -27.12132 -26.37175 -24.31960 -23.16080 -21.47224 -20.84376 -19.96200 -19.63841 -17.15985 -16.37423 -16.16723 -15.91496 -15.39240 -14.81935 -14.56573 -14.13172 -13.99084 -13.46296 -13.21973 -12.98234 -12.58711 -12.44690 -12.37653 -12.12337 -11.92886 -11.53435 -11.41241 -11.06111 -10.97404 -10.78458 -10.67595 -10.64518 -10.19623 -9.92674 -9.60877 -9.42820 -9.30933 -8.50792 -8.09484 -7.47948 -7.38588 -6.09223 -4.10391 2.01539 2.19976 2.69853 2.83856 3.29193 3.30366 3.36398 3.40191 4.37447 4.66212 4.89886 4.95610 5.04152 5.24115 5.26087 5.26929 5.30683 5.42720 5.58152 5.68113 5.75707 5.87826 5.92145 5.97102 6.01581 6.08429 6.14519 6.22050 6.31407 6.36478 6.47190 6.71921 6.75853 7.08222 7.22716 7.44539 7.73636 7.95949 8.05151 8.41265 8.97808 9.54339 11.00994 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.006590 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.088659 B = 4247.885817 C = 5375.818568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.506 4.506 8 H 0.066 0.934 9 C 0.193 3.807 10 N -0.530 5.530 11 C 0.124 3.876 12 C 0.026 3.974 13 C -0.222 4.222 14 C -0.213 4.213 15 C -0.050 4.050 16 O -0.165 6.165 17 C 0.072 3.928 18 C -0.100 4.100 19 H 0.100 0.900 20 C -0.123 4.123 21 C -0.061 4.061 22 S -0.337 6.337 23 C -0.027 4.027 24 H 0.262 0.738 25 H 0.028 0.972 26 H 0.001 0.999 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.196 0.804 32 H 0.086 0.914 33 H 0.028 0.972 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.785 -13.257 3.409 15.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.545 4.545 8 H 0.084 0.916 9 C 0.069 3.931 10 N -0.255 5.255 11 C -0.005 4.005 12 C -0.026 4.026 13 C -0.242 4.242 14 C -0.232 4.232 15 C -0.118 4.118 16 O -0.060 6.060 17 C -0.058 4.058 18 C -0.120 4.120 19 H 0.118 0.882 20 C -0.163 4.163 21 C -0.209 4.209 22 S -0.111 6.111 23 C -0.174 4.174 24 H 0.071 0.929 25 H 0.046 0.954 26 H 0.019 0.981 27 H 0.106 0.894 28 H 0.076 0.924 29 H 0.158 0.842 30 H 0.159 0.841 31 H 0.213 0.787 32 H 0.104 0.896 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.126 0.874 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.165 -12.835 2.388 15.398 hybrid contribution -1.266 0.579 1.177 1.823 sum 6.900 -12.256 3.565 14.509 Atomic orbital electron populations 1.69955 1.06065 1.26855 1.50821 1.24965 0.94810 0.99281 0.95346 0.86530 0.79897 0.83240 0.78086 1.20647 1.21364 1.19695 1.21134 0.93929 0.89667 1.49760 0.91621 1.19810 0.89828 0.86890 0.96575 1.62038 1.41533 1.02339 1.19564 1.20632 0.89920 0.87902 1.01999 1.22588 0.94451 0.98538 0.86978 1.21440 1.02177 0.99008 1.01594 1.21681 1.00906 1.03570 0.97035 1.23913 0.98111 0.90403 0.99364 1.84079 1.38114 1.42593 1.41227 1.22083 0.92846 1.00937 0.89914 1.22452 0.95556 0.99748 0.94264 0.88199 1.21965 0.93597 1.02639 0.98062 1.23797 0.97529 1.03485 0.96124 1.87629 1.21685 1.80875 1.20889 1.24339 0.88086 1.01083 1.03915 0.92885 0.95438 0.98128 0.89421 0.92361 0.84186 0.84097 0.78743 0.89555 0.95367 0.91150 0.91074 0.89782 0.89186 0.87422 0.89041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.62 13.28 55.43 0.74 -24.88 16 2 C 0.06 1.56 5.45 -17.82 -0.10 1.47 16 3 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.51 -13.34 8.33 -34.44 -0.29 -13.63 16 8 H 0.07 1.72 7.54 -52.48 -0.40 1.33 16 9 C 0.19 4.63 4.68 -4.98 -0.02 4.61 16 10 N -0.53 -10.39 4.16 -237.52 -0.99 -11.38 16 11 C 0.12 2.08 5.43 -4.97 -0.03 2.05 16 12 C 0.03 0.41 4.88 -35.62 -0.17 0.23 16 13 C -0.22 -3.05 8.62 -39.70 -0.34 -3.40 16 14 C -0.21 -2.66 10.74 -39.70 -0.43 -3.09 16 15 C -0.05 -0.64 12.09 29.42 0.36 -0.28 16 16 O -0.17 -2.65 10.65 5.73 0.06 -2.59 16 17 C 0.07 1.27 3.88 -3.82 -0.01 1.26 16 18 C -0.10 -1.56 2.32 -89.51 -0.21 -1.76 16 19 H 0.10 1.60 3.65 -51.93 -0.19 1.41 16 20 C -0.12 -1.62 5.86 -26.40 -0.15 -1.78 16 21 C -0.06 -0.78 7.38 37.52 0.28 -0.51 16 22 S -0.34 -5.40 23.23 -107.50 -2.50 -7.89 16 23 C -0.03 -0.46 6.66 38.30 0.26 -0.21 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.03 0.70 7.78 -51.93 -0.40 0.30 16 26 H 0.00 0.02 8.03 -51.93 -0.42 -0.40 16 27 H 0.09 1.48 7.82 -51.93 -0.41 1.08 16 28 H 0.06 0.91 7.85 -51.93 -0.41 0.50 16 29 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.14 1.44 8.06 -52.48 -0.42 1.01 16 31 H 0.20 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.09 1.72 7.01 -51.93 -0.36 1.35 16 33 H 0.03 0.46 7.64 -51.93 -0.40 0.06 16 34 H 0.07 0.91 7.80 -51.93 -0.41 0.50 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.11 2.03 8.14 -51.93 -0.42 1.61 16 39 H 0.09 1.70 7.78 -51.93 -0.40 1.30 16 LS Contribution 326.49 15.07 4.92 4.92 Total: -1.00 -28.64 326.49 -9.54 -38.19 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.89 Total: 2.56 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -0.87 Total: -15.03 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: -0.25 Total: -36.26 kcal Atomic # 8 Polarization: -2.65 SS G_CDS: 0.06 Total: -2.59 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -5.40 SS G_CDS: -2.50 Total: -7.89 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.64 -9.54 -38.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279517267.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.719 kcal (2) G-P(sol) polarization free energy of solvation -28.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds