Wall clock time and date at job start Tue Mar 31 2020 05:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00009 * 2 1 4 4 H 1.48494 * 109.47314 * 274.99675 * 3 2 1 5 5 H 1.48497 * 109.46838 * 35.00089 * 3 2 1 6 6 H 1.48505 * 109.46796 * 154.99606 * 3 2 1 7 7 C 1.37880 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99949 * 185.10598 * 7 2 1 9 9 C 1.50698 * 119.99974 * 5.10679 * 7 2 1 10 10 N 1.46901 * 109.46977 * 185.07909 * 9 7 2 11 11 C 1.46893 * 111.00007 * 196.14018 * 10 9 7 12 12 C 1.50711 * 109.47082 * 168.47523 * 11 10 9 13 13 C 1.34507 * 125.78718 * 97.87471 * 12 11 10 14 14 C 1.41386 * 106.83890 * 179.73673 * 13 12 11 15 15 C 1.34518 * 106.83913 * 0.02562 * 14 13 12 16 16 O 1.34295 * 108.42061 * 359.97438 * 15 14 13 17 17 C 1.46905 * 110.99880 * 72.18474 * 10 9 7 18 18 C 1.53003 * 109.47313 * 211.17009 * 17 10 9 19 19 H 1.09005 * 109.59493 * 306.81279 * 18 17 10 20 20 C 1.52934 * 109.60479 * 186.49398 * 18 17 10 21 21 C 1.53705 * 112.49133 * 209.96940 * 20 18 17 22 22 S 1.83400 * 104.96785 * 2.82307 * 21 20 18 23 23 C 1.55151 * 109.60194 * 66.95332 * 18 17 10 24 24 H 0.97006 * 120.00179 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47393 * 65.08062 * 9 7 2 26 26 H 1.08994 * 109.47033 * 305.07554 * 9 7 2 27 27 H 1.08993 * 109.47202 * 48.47583 * 11 10 9 28 28 H 1.08998 * 109.47356 * 288.47417 * 11 10 9 29 29 H 1.07999 * 126.58417 * 359.77423 * 13 12 11 30 30 H 1.08003 * 126.58044 * 179.97438 * 14 13 12 31 31 H 1.08002 * 125.78677 * 179.97438 * 15 14 13 32 32 H 1.09001 * 109.47280 * 331.17048 * 17 10 9 33 33 H 1.08997 * 109.47111 * 91.17308 * 17 10 9 34 34 H 1.09006 * 108.88547 * 330.76207 * 20 18 17 35 35 H 1.08994 * 108.89325 * 89.31328 * 20 18 17 36 36 H 1.09003 * 110.34290 * 121.69493 * 21 20 18 37 37 H 1.09003 * 110.34176 * 243.95044 * 21 20 18 38 38 H 1.09004 * 111.12946 * 279.28043 * 23 18 17 39 39 H 1.08998 * 111.13078 * 43.45901 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3910 2.1074 -1.3947 5 1 1.5034 2.6198 0.8031 6 1 3.5955 1.4119 0.5918 7 6 2.0045 -1.1941 -0.0005 8 1 3.0813 -1.1960 0.0827 9 6 1.2554 -2.4965 -0.1173 10 7 2.1949 -3.6164 0.0280 11 6 1.5977 -4.8701 -0.4510 12 6 2.6658 -5.9284 -0.5532 13 6 2.9252 -6.8755 0.3660 14 6 3.9943 -7.6523 -0.1368 15 6 4.3245 -7.1330 -1.3329 16 8 3.5164 -6.0892 -1.5801 17 6 2.6475 -3.7467 1.4195 18 6 4.0747 -4.2977 1.4422 19 1 4.1213 -5.2163 0.8572 20 6 4.4903 -4.5868 2.8853 21 6 6.0030 -4.4256 3.1051 22 16 6.6579 -3.8530 1.4905 23 6 5.0467 -3.2503 0.8378 24 1 -0.4851 0.8401 0.0004 25 1 0.7724 -2.5517 -1.0928 26 1 0.4996 -2.5524 0.6661 27 1 1.1514 -4.7084 -1.4321 28 1 0.8285 -5.1967 0.2488 29 1 2.4146 -7.0161 1.3071 30 1 4.4575 -8.4995 0.3471 31 1 5.1068 -7.4942 -1.9841 32 1 2.6278 -2.7691 1.9011 33 1 1.9864 -4.4286 1.9543 34 1 3.9624 -3.9016 3.5485 35 1 4.2063 -5.6087 3.1364 36 1 6.1965 -3.6816 3.8778 37 1 6.4502 -5.3815 3.3779 38 1 5.0283 -3.2799 -0.2517 39 1 4.8235 -2.2488 1.2057 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279517267.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:11 Heat of formation + Delta-G solvation = 1.670544 kcal Electronic energy + Delta-G solvation = -20744.385612 eV Core-core repulsion = 17779.136530 eV Total energy + Delta-G solvation = -2965.249082 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.46041 -39.25047 -36.50909 -34.73410 -33.78567 -31.63700 -30.89974 -28.86055 -27.72903 -25.75293 -24.67736 -22.53653 -22.38360 -21.13128 -20.91753 -18.62601 -17.97302 -17.44737 -17.25559 -16.64976 -16.52520 -15.92034 -15.60236 -15.33308 -14.70776 -14.59532 -14.33864 -14.06410 -13.67621 -13.59922 -13.54828 -13.38703 -12.91206 -12.83884 -12.74927 -12.43195 -12.31528 -12.24662 -12.08714 -11.71202 -11.48776 -11.35582 -10.83465 -10.59436 -10.48929 -9.22309 -9.03980 -8.68275 -8.18920 -6.26757 0.91787 0.99572 1.39793 1.41775 1.46005 1.51968 1.82481 2.24977 2.40602 3.13812 3.23898 3.70993 3.85552 3.94794 4.13274 4.17574 4.23361 4.25772 4.35674 4.44324 4.53035 4.59395 4.67337 4.78134 4.82775 4.91888 4.92285 5.03538 5.10800 5.13869 5.20809 5.26509 5.31301 5.46397 5.69525 5.74401 6.07484 6.27919 6.41250 6.57897 6.89152 7.42152 8.90944 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.006590 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.088659 B = 4247.885817 C = 5375.818568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.956 3.044 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.209 3.791 10 N -0.538 5.538 11 C 0.125 3.875 12 C -0.004 4.004 13 C -0.208 4.208 14 C -0.214 4.214 15 C -0.051 4.051 16 O -0.193 6.193 17 C 0.078 3.922 18 C -0.088 4.088 19 H 0.103 0.897 20 C -0.122 4.122 21 C -0.049 4.049 22 S -0.360 6.360 23 C -0.025 4.025 24 H 0.263 0.737 25 H 0.004 0.996 26 H -0.023 1.023 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.156 0.844 30 H 0.170 0.830 31 H 0.228 0.772 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.455 -15.059 4.793 17.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.190 4.190 3 Si 0.782 3.218 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.084 3.916 10 N -0.262 5.262 11 C -0.003 4.003 12 C -0.055 4.055 13 C -0.227 4.227 14 C -0.233 4.233 15 C -0.118 4.118 16 O -0.089 6.089 17 C -0.051 4.051 18 C -0.109 4.109 19 H 0.120 0.880 20 C -0.161 4.161 21 C -0.197 4.197 22 S -0.133 6.133 23 C -0.173 4.173 24 H 0.072 0.928 25 H 0.022 0.978 26 H -0.005 1.005 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.174 0.826 30 H 0.188 0.812 31 H 0.244 0.756 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.134 0.866 38 H 0.102 0.898 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.850 -14.655 3.781 18.058 hybrid contribution -1.744 1.035 0.736 2.157 sum 8.106 -13.620 4.518 16.481 Atomic orbital electron populations 1.70063 1.07438 1.27684 1.52022 1.25739 0.95559 1.02567 0.95141 0.85561 0.78799 0.79343 0.78106 1.20341 1.20799 1.19158 1.21416 0.93872 0.90907 1.48976 0.92013 1.19422 0.89717 0.88197 0.94302 1.61933 1.40452 1.02643 1.21176 1.20561 0.90999 0.87172 1.01552 1.22277 0.95473 0.99478 0.88266 1.21692 1.01842 0.97854 1.01357 1.22024 1.00356 1.04071 0.96835 1.24696 0.97755 0.89143 1.00183 1.84051 1.38900 1.44071 1.41862 1.22027 0.94620 0.99942 0.88556 1.22382 0.93471 0.98843 0.96175 0.87960 1.21945 0.93969 1.04262 0.95881 1.23946 0.96833 1.05005 0.93900 1.87687 1.21056 1.81020 1.23568 1.24124 0.89936 1.00681 1.02581 0.92782 0.97788 1.00493 0.90596 0.91070 0.82628 0.81240 0.75607 0.92347 0.93737 0.90855 0.88527 0.88538 0.86595 0.89807 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.59 13.28 21.45 0.28 -54.30 16 2 C 0.01 0.46 5.45 84.66 0.46 0.92 16 3 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.51 -28.00 8.33 25.60 0.21 -27.79 16 8 H 0.06 3.35 7.54 -2.91 -0.02 3.33 16 9 C 0.21 10.53 4.68 85.56 0.40 10.93 16 10 N -0.54 -21.75 4.16 -905.38 -3.77 -25.52 16 11 C 0.12 4.28 5.43 85.56 0.46 4.74 16 12 C 0.00 -0.13 4.88 24.83 0.12 -0.01 16 13 C -0.21 -5.15 8.62 22.19 0.19 -4.96 16 14 C -0.21 -4.60 10.74 22.19 0.24 -4.36 16 15 C -0.05 -1.17 12.09 66.97 0.81 -0.36 16 16 O -0.19 -6.04 10.65 -2.40 -0.03 -6.06 16 17 C 0.08 2.76 3.88 86.30 0.34 3.10 16 18 C -0.09 -2.65 2.32 -10.08 -0.02 -2.68 16 19 H 0.10 3.09 3.65 -2.38 -0.01 3.08 16 20 C -0.12 -2.82 5.86 30.81 0.18 -2.64 16 21 C -0.05 -1.09 7.38 72.22 0.53 -0.55 16 22 S -0.36 -10.97 23.23 -56.49 -1.31 -12.28 16 23 C -0.03 -0.88 6.66 72.72 0.48 -0.40 16 24 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 25 H 0.00 0.22 7.78 -2.39 -0.02 0.20 16 26 H -0.02 -1.23 8.03 -2.39 -0.02 -1.25 16 27 H 0.08 2.71 7.82 -2.39 -0.02 2.69 16 28 H 0.07 2.21 7.85 -2.39 -0.02 2.19 16 29 H 0.16 3.32 8.06 -2.91 -0.02 3.29 16 30 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.23 3.43 8.06 -2.91 -0.02 3.41 16 32 H 0.06 2.38 7.01 -2.39 -0.02 2.37 16 33 H 0.04 1.41 7.64 -2.39 -0.02 1.39 16 34 H 0.07 1.69 7.80 -2.38 -0.02 1.67 16 35 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.08 3.28 8.14 -2.38 -0.02 3.26 16 39 H 0.07 2.69 7.78 -2.39 -0.02 2.67 16 Total: -1.00 -63.44 326.49 2.64 -60.80 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 1.02 Total: 15.33 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 4.41 Total: -24.06 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -3.48 Total: -79.82 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.03 Total: -6.06 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: -10.97 SS G_CDS: -1.31 Total: -12.28 kcal Total: -63.44 2.64 -60.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279517267.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.474 kcal (2) G-P(sol) polarization free energy of solvation -63.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds