Wall clock time and date at job start Tue Mar 31 2020 05:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38140 * 120.33270 * 2 1 4 4 N 1.31981 * 120.83474 * 180.02562 * 3 2 1 5 5 O 1.41606 * 119.19551 * 180.02562 * 4 3 2 6 6 C 1.32503 * 121.61395 * 0.02562 * 4 3 2 7 7 N 1.39257 * 119.70559 * 179.97438 * 6 4 3 8 8 C 1.46505 * 120.00367 * 180.02562 * 7 6 4 9 9 C 1.52995 * 109.47259 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.47297 * 179.97438 * 9 8 7 11 11 C 1.50695 * 109.47428 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00141 * 0.02562 * 11 10 9 13 13 C 1.37883 * 120.00156 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99659 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99975 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47310 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47260 * 120.00052 * 15 13 11 18 18 H 1.48507 * 109.46923 * 239.99907 * 15 13 11 19 19 C 1.38973 * 120.59614 * 359.97438 * 6 4 3 20 20 C 1.38434 * 119.11538 * 0.02562 * 19 6 4 21 21 N 1.48005 * 120.74284 * 180.02562 * 20 19 6 22 22 O 1.21790 * 120.00012 * 6.44567 * 21 20 19 23 23 O 1.21798 * 119.99912 * 186.44189 * 21 20 19 24 24 H 1.09004 * 109.46809 * 96.32149 * 1 2 3 25 25 H 1.08998 * 109.46881 * 216.31613 * 1 2 3 26 26 H 1.08995 * 109.47656 * 336.31678 * 1 2 3 27 27 H 1.08002 * 119.58597 * 359.74320 * 3 2 1 28 28 H 0.97007 * 119.99930 * 0.02562 * 7 6 4 29 29 H 1.08998 * 109.46874 * 299.99877 * 8 7 6 30 30 H 1.08998 * 109.46778 * 59.99954 * 8 7 6 31 31 H 1.09005 * 109.47371 * 300.00056 * 9 8 7 32 32 H 1.09003 * 109.47542 * 59.99888 * 9 8 7 33 33 H 1.08998 * 109.47221 * 300.00655 * 10 9 8 34 34 H 1.09002 * 109.47383 * 59.99702 * 10 9 8 35 35 H 0.97004 * 119.99442 * 179.97438 * 14 13 11 36 36 H 1.08002 * 120.44784 * 180.02562 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2046 1.1923 0.0000 4 7 3.5244 1.2039 -0.0005 5 8 4.2043 2.4460 0.0001 6 6 4.2288 0.0816 -0.0015 7 7 5.6202 0.1402 -0.0026 8 6 6.4055 -1.0966 -0.0043 9 6 7.8966 -0.7540 -0.0058 10 6 8.7167 -2.0456 -0.0069 11 6 10.1854 -1.7081 -0.0091 12 1 10.5022 -0.6756 -0.0091 13 6 11.1247 -2.7175 -0.0099 14 7 10.7388 -3.9747 -0.0093 15 14 12.9452 -2.2991 -0.0118 16 1 13.1141 -0.8237 -0.0128 17 1 13.5857 -2.8703 1.2002 18 1 13.5832 -2.8708 -1.2249 19 6 3.5917 -1.1535 -0.0016 20 6 2.2081 -1.1976 -0.0011 21 7 1.4924 -2.4932 -0.0005 22 8 2.1154 -3.5329 0.1179 23 8 0.2805 -2.5195 -0.1185 24 1 -0.3633 -0.1132 -1.0215 25 1 -0.3633 -0.8280 0.6086 26 1 -0.3634 0.9410 0.4128 27 1 1.6633 2.1268 -0.0042 28 1 6.0694 0.9999 -0.0022 29 1 6.1672 -1.6795 0.8854 30 1 6.1657 -1.6779 -0.8946 31 1 8.1346 -0.1712 -0.8957 32 1 8.1367 -0.1724 0.8843 33 1 8.4786 -2.6280 0.8831 34 1 8.4767 -2.6276 -0.8968 35 1 11.3997 -4.6848 -0.0102 36 1 4.1682 -2.0667 -0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286034831.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:37 Heat of formation + Delta-G solvation = 52.822620 kcal Electronic energy + Delta-G solvation = -21221.878277 eV Core-core repulsion = 17712.554101 eV Total energy + Delta-G solvation = -3509.324176 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.84593 -41.66558 -37.42816 -36.92400 -35.69484 -34.05845 -32.58879 -31.19946 -30.67606 -28.21408 -27.34594 -26.10634 -24.31313 -23.30841 -22.44636 -20.80981 -19.65175 -19.32719 -18.14921 -17.90668 -17.70844 -16.52640 -16.30106 -16.02529 -15.31606 -14.96519 -14.90384 -14.49765 -13.81960 -13.57311 -13.44882 -12.85547 -12.52352 -12.42052 -12.04170 -11.82945 -11.76985 -11.49766 -11.20395 -11.08284 -10.97112 -10.76431 -10.65432 -10.00953 -9.68327 -9.65439 -9.31655 -9.26996 -8.48681 -8.17090 -6.13357 -4.16724 -0.86504 0.12682 0.77842 0.78529 1.77228 2.49436 2.88852 3.24009 3.32203 3.35998 3.58284 3.73974 3.83098 4.24771 4.36017 4.56614 4.76180 4.89147 5.09377 5.13046 5.22703 5.28062 5.28719 5.52146 5.67441 5.79634 5.94393 6.22706 6.27123 6.48228 6.73898 6.84277 7.21486 7.22371 7.46128 7.55535 7.83934 8.24091 8.89429 9.48663 10.97833 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024366 B = 0.003291 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.872541 B = 8505.926980 C = 9622.255341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.107 4.107 3 C 0.134 3.866 4 N -0.157 5.157 5 O -0.541 6.541 6 C 0.395 3.605 7 N -0.683 5.683 8 C 0.107 3.893 9 C -0.122 4.122 10 C 0.026 3.974 11 C -0.525 4.525 12 H 0.057 0.943 13 C 0.058 3.942 14 N -0.893 5.893 15 Si 0.894 3.106 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.137 4.137 20 C 0.038 3.962 21 N 0.027 4.973 22 O -0.139 6.139 23 O -0.138 6.138 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.080 0.920 27 H 0.199 0.801 28 H 0.427 0.573 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.021 0.979 34 H 0.021 0.979 35 H 0.262 0.738 36 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.640 5.309 0.023 22.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.113 4.113 3 C -0.014 4.014 4 N 0.152 4.848 5 O -0.592 6.592 6 C 0.164 3.836 7 N -0.314 5.314 8 C -0.015 4.015 9 C -0.160 4.160 10 C -0.012 4.012 11 C -0.564 4.564 12 H 0.075 0.925 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.722 3.278 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.163 4.163 20 C -0.052 4.052 21 N 0.549 4.451 22 O -0.357 6.357 23 O -0.355 6.355 24 H 0.109 0.891 25 H 0.118 0.882 26 H 0.098 0.902 27 H 0.216 0.784 28 H 0.267 0.733 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.072 0.928 36 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -20.792 5.980 0.022 21.635 hybrid contribution 1.251 0.326 -0.015 1.293 sum -19.542 6.307 0.007 20.534 Atomic orbital electron populations 1.21078 0.86138 1.05050 1.04907 1.19966 0.99569 0.88713 1.03061 1.22321 0.82358 1.00025 0.96648 1.43162 1.05004 1.09119 1.27564 1.97647 1.69853 1.02267 1.89406 1.17828 0.86495 0.84720 0.94594 1.45534 0.99430 1.12900 1.73559 1.22187 0.93230 0.83844 1.02242 1.21929 0.89573 1.02576 1.01893 1.19040 0.94036 0.90333 0.97792 1.21196 0.90976 0.92903 1.51291 0.92483 1.25016 0.99278 0.95007 0.95041 1.69959 1.34022 0.98828 1.50345 0.86507 0.85060 0.78589 0.77692 1.19701 1.20904 1.20912 1.20817 0.92233 0.98181 1.05090 1.21026 0.91957 0.84256 1.07993 1.43265 1.01119 1.02183 0.98485 1.94635 1.68468 1.20493 1.52054 1.94502 0.95645 1.93437 1.51919 0.89064 0.88153 0.90162 0.78369 0.73261 0.90642 0.90705 0.92056 0.92049 0.96065 0.96088 0.92849 0.79477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 8.79 36.01 0.32 -0.27 16 2 C -0.11 -0.84 5.90 -104.46 -0.62 -1.46 16 3 C 0.13 1.21 10.34 -17.52 -0.18 1.03 16 4 N -0.16 -2.10 3.60 -12.36 -0.04 -2.15 16 5 O -0.54 -10.18 19.05 -11.47 -0.22 -10.40 16 6 C 0.40 4.95 7.49 -154.74 -1.16 3.80 16 7 N -0.68 -9.22 5.68 -60.37 -0.34 -9.56 16 8 C 0.11 1.48 4.89 -4.04 -0.02 1.46 16 9 C -0.12 -2.16 5.27 -26.74 -0.14 -2.30 16 10 C 0.03 0.60 4.97 -27.89 -0.14 0.46 16 11 C -0.53 -14.07 9.11 -34.44 -0.31 -14.39 16 12 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.89 -25.69 13.29 55.43 0.74 -24.96 16 15 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C -0.14 -1.43 8.85 -39.24 -0.35 -1.78 16 20 C 0.04 0.37 6.87 -79.68 -0.55 -0.18 16 21 N 0.03 0.30 4.45 34.09 0.15 0.45 16 22 O -0.14 -1.71 18.56 -29.46 -0.55 -2.25 16 23 O -0.14 -1.43 15.54 -29.46 -0.46 -1.88 16 24 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.10 0.58 5.93 -51.93 -0.31 0.28 16 26 H 0.08 0.23 8.05 -51.93 -0.42 -0.19 16 27 H 0.20 1.21 8.06 -52.49 -0.42 0.78 16 28 H 0.43 6.23 7.57 -40.82 -0.31 5.93 16 29 H 0.08 0.97 7.93 -51.93 -0.41 0.56 16 30 H 0.07 0.96 7.93 -51.93 -0.41 0.55 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.19 1.80 6.36 -52.49 -0.33 1.46 16 LS Contribution 317.56 15.07 4.79 4.79 Total: -1.00 -33.19 317.56 -8.47 -41.66 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -4.27 Total: 0.45 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -3.25 Total: -12.12 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.50 Total: -36.21 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -1.22 Total: -14.54 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.19 -8.47 -41.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286034831.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.485 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds