Wall clock time and date at job start Tue Mar 31 2020 05:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38140 * 120.33270 * 2 1 4 4 N 1.31981 * 120.83474 * 180.02562 * 3 2 1 5 5 O 1.41606 * 119.19551 * 180.02562 * 4 3 2 6 6 C 1.32503 * 121.61395 * 0.02562 * 4 3 2 7 7 N 1.39257 * 119.70559 * 179.97438 * 6 4 3 8 8 C 1.46505 * 120.00367 * 180.02562 * 7 6 4 9 9 C 1.52995 * 109.47259 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.47297 * 179.97438 * 9 8 7 11 11 C 1.50695 * 109.47428 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00141 * 0.02562 * 11 10 9 13 13 C 1.37883 * 120.00156 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99659 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99975 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47310 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47260 * 120.00052 * 15 13 11 18 18 H 1.48507 * 109.46923 * 239.99907 * 15 13 11 19 19 C 1.38973 * 120.59614 * 359.97438 * 6 4 3 20 20 C 1.38434 * 119.11538 * 0.02562 * 19 6 4 21 21 N 1.48005 * 120.74284 * 180.02562 * 20 19 6 22 22 O 1.21790 * 120.00012 * 6.44567 * 21 20 19 23 23 O 1.21798 * 119.99912 * 186.44189 * 21 20 19 24 24 H 1.09004 * 109.46809 * 96.32149 * 1 2 3 25 25 H 1.08998 * 109.46881 * 216.31613 * 1 2 3 26 26 H 1.08995 * 109.47656 * 336.31678 * 1 2 3 27 27 H 1.08002 * 119.58597 * 359.74320 * 3 2 1 28 28 H 0.97007 * 119.99930 * 0.02562 * 7 6 4 29 29 H 1.08998 * 109.46874 * 299.99877 * 8 7 6 30 30 H 1.08998 * 109.46778 * 59.99954 * 8 7 6 31 31 H 1.09005 * 109.47371 * 300.00056 * 9 8 7 32 32 H 1.09003 * 109.47542 * 59.99888 * 9 8 7 33 33 H 1.08998 * 109.47221 * 300.00655 * 10 9 8 34 34 H 1.09002 * 109.47383 * 59.99702 * 10 9 8 35 35 H 0.97004 * 119.99442 * 179.97438 * 14 13 11 36 36 H 1.08002 * 120.44784 * 180.02562 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2046 1.1923 0.0000 4 7 3.5244 1.2039 -0.0005 5 8 4.2043 2.4460 0.0001 6 6 4.2288 0.0816 -0.0015 7 7 5.6202 0.1402 -0.0026 8 6 6.4055 -1.0966 -0.0043 9 6 7.8966 -0.7540 -0.0058 10 6 8.7167 -2.0456 -0.0069 11 6 10.1854 -1.7081 -0.0091 12 1 10.5022 -0.6756 -0.0091 13 6 11.1247 -2.7175 -0.0099 14 7 10.7388 -3.9747 -0.0093 15 14 12.9452 -2.2991 -0.0118 16 1 13.1141 -0.8237 -0.0128 17 1 13.5857 -2.8703 1.2002 18 1 13.5832 -2.8708 -1.2249 19 6 3.5917 -1.1535 -0.0016 20 6 2.2081 -1.1976 -0.0011 21 7 1.4924 -2.4932 -0.0005 22 8 2.1154 -3.5329 0.1179 23 8 0.2805 -2.5195 -0.1185 24 1 -0.3633 -0.1132 -1.0215 25 1 -0.3633 -0.8280 0.6086 26 1 -0.3634 0.9410 0.4128 27 1 1.6633 2.1268 -0.0042 28 1 6.0694 0.9999 -0.0022 29 1 6.1672 -1.6795 0.8854 30 1 6.1657 -1.6779 -0.8946 31 1 8.1346 -0.1712 -0.8957 32 1 8.1367 -0.1724 0.8843 33 1 8.4786 -2.6280 0.8831 34 1 8.4767 -2.6276 -0.8968 35 1 11.3997 -4.6848 -0.0102 36 1 4.1682 -2.0667 -0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286034831.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:37 Heat of formation + Delta-G solvation = 32.691235 kcal Electronic energy + Delta-G solvation = -21222.751239 eV Core-core repulsion = 17712.554101 eV Total energy + Delta-G solvation = -3510.197138 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.70840 -42.55908 -38.43106 -37.85568 -36.61698 -35.70026 -33.95196 -32.47745 -31.76469 -29.34610 -28.38528 -27.34188 -25.32666 -24.56495 -23.48764 -22.27894 -20.60732 -20.21922 -19.02838 -18.80744 -18.66455 -18.45521 -17.27518 -16.87963 -16.55471 -16.21142 -16.12618 -15.93779 -14.48148 -14.41187 -14.27321 -14.03226 -13.91952 -13.77565 -13.49506 -12.90490 -12.66710 -12.62419 -12.61616 -12.42836 -12.37453 -12.01401 -11.89260 -11.55586 -11.44967 -11.24319 -10.89264 -10.57777 -10.42283 -9.19334 -8.23267 -6.33185 -1.73195 -0.66193 -0.10392 -0.06951 0.87212 1.38455 1.40122 1.51932 1.65424 1.84695 2.39297 2.76351 2.94750 3.10725 3.11256 3.42051 3.81479 3.92173 4.06208 4.06716 4.17415 4.42819 4.67805 4.73865 4.81460 4.85254 4.92823 5.06676 5.07491 5.25995 5.37557 5.47943 5.66730 5.80796 5.82211 6.11657 6.20927 6.33588 6.83182 7.36242 8.88320 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024366 B = 0.003291 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.872541 B = 8505.926980 C = 9622.255341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.080 4.080 3 C 0.145 3.855 4 N -0.174 5.174 5 O -0.598 6.598 6 C 0.386 3.614 7 N -0.693 5.693 8 C 0.122 3.878 9 C -0.108 4.108 10 C 0.028 3.972 11 C -0.545 4.545 12 H 0.057 0.943 13 C 0.003 3.997 14 N -0.928 5.928 15 Si 0.960 3.040 16 H -0.265 1.265 17 H -0.278 1.278 18 H -0.279 1.279 19 C -0.135 4.135 20 C 0.037 3.963 21 N 0.027 4.973 22 O -0.187 6.187 23 O -0.101 6.101 24 H 0.108 0.892 25 H 0.098 0.902 26 H 0.112 0.888 27 H 0.232 0.768 28 H 0.420 0.580 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.004 0.996 34 H 0.003 0.997 35 H 0.264 0.736 36 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.823 6.116 -0.053 24.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.085 4.085 3 C -0.002 4.002 4 N 0.133 4.867 5 O -0.647 6.647 6 C 0.156 3.844 7 N -0.325 5.325 8 C 0.000 4.000 9 C -0.146 4.146 10 C -0.010 4.010 11 C -0.583 4.583 12 H 0.076 0.924 13 C -0.195 4.195 14 N -0.568 5.568 15 Si 0.785 3.215 16 H -0.189 1.189 17 H -0.204 1.204 18 H -0.204 1.204 19 C -0.161 4.161 20 C -0.053 4.053 21 N 0.549 4.451 22 O -0.392 6.392 23 O -0.329 6.329 24 H 0.126 0.874 25 H 0.116 0.884 26 H 0.131 0.869 27 H 0.249 0.751 28 H 0.259 0.741 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.073 0.927 36 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -22.897 6.739 -0.039 23.868 hybrid contribution 1.608 0.053 -0.004 1.609 sum -21.289 6.791 -0.043 22.346 Atomic orbital electron populations 1.21298 0.83312 1.06824 1.06000 1.20369 1.01104 0.87210 0.99851 1.23005 0.80999 1.01834 0.94323 1.43264 1.06186 1.08024 1.29177 1.97622 1.71087 1.04086 1.91910 1.17911 0.86046 0.85165 0.95276 1.45270 1.00084 1.12041 1.75081 1.21866 0.90777 0.84138 1.03232 1.21615 0.91641 0.99570 1.01807 1.18911 0.93606 0.92467 0.95999 1.21683 0.92955 0.92997 1.50699 0.92430 1.25883 1.03894 0.94926 0.94784 1.70070 1.35514 0.99770 1.51476 0.85475 0.79620 0.78630 0.77786 1.18930 1.20419 1.20430 1.20818 0.92831 0.97517 1.04892 1.21172 0.91846 0.84454 1.07804 1.43347 1.01142 1.02297 0.98337 1.94670 1.68677 1.21019 1.54858 1.94478 0.95561 1.93447 1.49408 0.87411 0.88409 0.86930 0.75146 0.74051 0.89732 0.89774 0.92148 0.92149 0.97795 0.97813 0.92693 0.79010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 8.79 71.24 0.63 0.01 16 2 C -0.08 -0.97 5.90 -19.76 -0.12 -1.09 16 3 C 0.14 2.22 10.34 84.65 0.88 3.10 16 4 N -0.17 -4.48 3.60 -193.02 -0.69 -5.18 16 5 O -0.60 -22.72 19.05 -38.80 -0.74 -23.46 16 6 C 0.39 9.51 7.49 132.91 1.00 10.50 16 7 N -0.69 -18.93 5.68 -344.91 -1.96 -20.88 16 8 C 0.12 3.40 4.89 86.38 0.42 3.83 16 9 C -0.11 -3.92 5.27 30.59 0.16 -3.76 16 10 C 0.03 1.34 4.97 29.84 0.15 1.49 16 11 C -0.55 -29.71 9.11 25.60 0.23 -29.47 16 12 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 13 C 0.00 0.19 5.46 84.66 0.46 0.66 16 14 N -0.93 -54.40 13.29 21.45 0.28 -54.12 16 15 Si 0.96 43.33 29.54 68.60 2.03 45.35 16 16 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 19 C -0.13 -2.69 8.85 22.49 0.20 -2.49 16 20 C 0.04 0.65 6.87 36.55 0.25 0.90 16 21 N 0.03 0.54 4.45 -46.06 -0.21 0.33 16 22 O -0.19 -4.49 18.56 18.90 0.35 -4.14 16 23 O -0.10 -1.75 15.54 18.89 0.29 -1.46 16 24 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 25 H 0.10 0.68 5.93 -2.39 -0.01 0.66 16 26 H 0.11 -0.03 8.05 -2.39 -0.02 -0.05 16 27 H 0.23 1.90 8.06 -2.91 -0.02 1.87 16 28 H 0.42 12.68 7.57 -92.70 -0.70 11.98 16 29 H 0.08 2.19 7.93 -2.39 -0.02 2.17 16 30 H 0.08 2.17 7.93 -2.39 -0.02 2.15 16 31 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 36 H 0.19 3.61 6.36 -2.91 -0.02 3.59 16 Total: -1.00 -73.71 317.56 4.03 -69.68 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.42 Total: 10.21 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 4.26 Total: -16.34 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -2.57 Total: -79.85 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.09 Total: -29.05 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -73.71 4.03 -69.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286034831.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.366 kcal (2) G-P(sol) polarization free energy of solvation -73.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds