Wall clock time and date at job start Tue Mar 31 2020 05:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86797 * 119.99839 * 2 1 4 4 H 1.48500 * 109.47063 * 269.99785 * 3 2 1 5 5 H 1.48501 * 109.47398 * 30.00401 * 3 2 1 6 6 H 1.48503 * 109.46949 * 150.00271 * 3 2 1 7 7 C 1.38801 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99811 * 359.97438 * 7 2 1 9 9 S 1.76192 * 119.99985 * 180.02562 * 7 2 1 10 10 C 1.81006 * 100.00024 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47197 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47110 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.47320 * 179.97438 * 12 11 10 14 14 C 1.44683 * 111.00290 * 167.65129 * 13 12 11 15 15 C 1.50955 * 116.82969 * 199.51568 * 14 13 12 16 16 C 1.53767 * 110.79810 * 287.40520 * 15 14 13 17 17 C 1.51964 * 106.80646 * 78.83260 * 16 15 14 18 18 O 1.33765 * 127.47338 * 116.19545 * 17 16 15 19 19 C 1.34653 * 109.18833 * 180.21430 * 18 17 16 20 20 C 1.34893 * 108.46411 * 359.89641 * 19 18 17 21 21 C 1.34030 * 123.99830 * 296.22282 * 17 16 15 22 22 C 1.47555 * 110.99871 * 293.95282 * 13 12 11 23 23 H 0.96993 * 119.99712 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46764 * 59.99566 * 10 9 7 25 25 H 1.09003 * 109.46962 * 299.99907 * 10 9 7 26 26 H 1.08998 * 109.47150 * 59.99469 * 11 10 9 27 27 H 1.09003 * 109.47134 * 299.99857 * 11 10 9 28 28 H 1.09001 * 109.47564 * 60.00212 * 12 11 10 29 29 H 1.08994 * 109.47146 * 299.99787 * 12 11 10 30 30 H 1.09004 * 107.99772 * 77.65143 * 14 13 12 31 31 H 1.09001 * 107.96891 * 321.35953 * 14 13 12 32 32 H 1.09004 * 109.21010 * 167.06411 * 15 14 13 33 33 H 1.08993 * 109.21010 * 47.74826 * 15 14 13 34 34 H 1.09006 * 109.98099 * 198.15344 * 16 15 14 35 35 H 1.08997 * 109.98654 * 319.41400 * 16 15 14 36 36 H 1.08005 * 125.76649 * 179.85220 * 19 18 17 37 37 H 1.08002 * 126.79361 * 179.97438 * 20 19 18 38 38 H 1.09007 * 109.94217 * 34.47474 * 22 13 12 39 39 H 1.09001 * 110.01379 * 273.27018 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2021 0.0001 10 6 4.0866 -2.9847 -0.0001 11 6 5.5957 -3.2364 -0.0002 12 6 5.8613 -4.7431 -0.0011 13 7 7.3103 -4.9849 -0.0019 14 6 7.6047 -6.3719 0.2862 15 6 9.0017 -6.6869 0.7637 16 6 10.0124 -6.5686 -0.3890 17 6 10.2943 -5.0870 -0.5758 18 8 11.4587 -4.4519 -0.4019 19 6 11.2915 -3.1417 -0.6635 20 6 10.0045 -2.9363 -1.0113 21 6 9.3725 -4.1906 -0.9541 22 6 7.9234 -4.5197 -1.2608 23 1 -0.4849 0.8400 0.0004 24 1 3.6439 -3.4314 -0.8904 25 1 3.6433 -3.4319 0.8896 26 1 6.0387 -2.7895 0.8897 27 1 6.0386 -2.7893 -0.8902 28 1 5.4184 -5.1897 -0.8914 29 1 5.4184 -5.1906 0.8885 30 1 7.4203 -6.9504 -0.6191 31 1 6.9038 -6.7133 1.0480 32 1 9.0252 -7.7027 1.1586 33 1 9.2762 -5.9890 1.5546 34 1 10.9327 -7.0935 -0.1328 35 1 9.5873 -6.9863 -1.3016 36 1 12.0582 -2.3832 -0.6041 37 1 9.5495 -1.9944 -1.2804 38 1 7.4074 -3.6286 -1.6185 39 1 7.8720 -5.3062 -2.0137 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288674626.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:12 Heat of formation + Delta-G solvation = 7.179046 kcal Electronic energy + Delta-G solvation = -19392.757155 eV Core-core repulsion = 16427.746939 eV Total energy + Delta-G solvation = -2965.010215 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.73325 -38.65758 -34.89712 -33.44677 -32.42821 -32.10566 -30.11370 -26.87366 -25.87889 -25.63076 -24.06120 -21.65248 -21.00816 -20.73374 -19.45147 -17.49359 -17.37203 -16.19336 -15.81611 -15.40656 -15.02537 -14.96240 -14.59280 -14.54833 -13.82008 -13.59643 -13.36026 -12.86785 -12.83628 -12.66064 -12.32686 -11.91553 -11.65209 -11.53172 -11.50600 -11.35715 -11.07537 -11.02269 -10.91084 -10.34487 -10.11447 -9.75986 -9.72693 -8.99261 -8.54128 -8.37130 -8.30958 -6.92328 -6.27269 -3.99153 1.69148 2.55536 2.89400 3.02268 3.31024 3.47009 3.56413 3.88918 4.33041 4.47920 4.61693 4.72490 4.80947 4.84959 4.87242 5.10079 5.11720 5.16799 5.23974 5.29271 5.39494 5.45323 5.52477 5.57838 5.64471 5.73626 5.78776 5.85125 5.94555 5.97955 6.01338 6.16615 6.26639 6.49546 6.51368 6.67374 7.01392 7.12117 7.16326 7.96634 8.45380 9.18839 10.82308 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028036 B = 0.003425 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.469185 B = 8172.960237 C = 8998.430662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.091 3.909 3 Si 0.862 3.138 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.237 1.237 7 C -0.502 4.502 8 H 0.087 0.913 9 S -0.215 6.215 10 C -0.082 4.082 11 C -0.097 4.097 12 C 0.066 3.934 13 N -0.544 5.544 14 C 0.063 3.937 15 C -0.112 4.112 16 C -0.035 4.035 17 C -0.014 4.014 18 O -0.176 6.176 19 C -0.057 4.057 20 C -0.190 4.190 21 C -0.162 4.162 22 C 0.122 3.878 23 H 0.270 0.730 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.200 0.800 37 H 0.149 0.851 38 H 0.091 0.909 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.630 -12.890 -1.397 25.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.117 4.117 3 Si 0.687 3.313 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.161 1.161 7 C -0.649 4.649 8 H 0.105 0.895 9 S 0.013 5.987 10 C -0.231 4.231 11 C -0.136 4.136 12 C -0.062 4.062 13 N -0.268 5.268 14 C -0.065 4.065 15 C -0.150 4.150 16 C -0.072 4.072 17 C -0.065 4.065 18 O -0.072 6.072 19 C -0.124 4.124 20 C -0.210 4.210 21 C -0.164 4.164 22 C -0.005 4.005 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.217 0.783 37 H 0.167 0.833 38 H 0.109 0.891 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 22.611 -11.802 -0.933 25.523 hybrid contribution -1.231 -0.343 -0.695 1.455 sum 21.380 -12.146 -1.627 24.643 Atomic orbital electron populations 1.69942 1.05934 1.27688 1.48417 1.24799 0.94505 0.99015 0.93360 0.86669 0.81789 0.83204 0.79687 1.19396 1.20119 1.16128 1.22135 0.87176 0.97384 1.58251 0.89456 1.84165 1.11547 1.05479 1.97521 1.23017 0.97380 0.99132 1.03577 1.21366 0.94660 0.94270 1.03294 1.22146 0.85801 0.97377 1.00914 1.60518 1.11803 1.20070 1.34438 1.21135 0.97104 0.88241 1.00066 1.21387 0.93759 1.02114 0.97781 1.20606 1.00049 0.86549 0.99988 1.22317 0.83359 0.95839 1.05027 1.83938 1.34001 1.20358 1.68881 1.24072 0.98869 0.82946 1.06474 1.21590 0.94086 0.98858 1.06437 1.20053 0.96469 0.92941 1.06920 1.20877 0.89667 1.00427 0.89488 0.91999 0.91639 0.91383 0.90647 0.91564 0.94727 0.90579 0.95682 0.91109 0.90300 0.90527 0.90071 0.89398 0.78310 0.83312 0.89062 0.93488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.96 13.97 55.49 0.78 -26.18 16 2 C 0.09 2.69 5.50 -17.43 -0.10 2.59 16 3 Si 0.86 21.71 27.74 -169.99 -4.71 16.99 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 7 C -0.50 -14.67 10.04 30.94 0.31 -14.36 16 8 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 9 S -0.21 -5.28 19.41 -107.50 -2.09 -7.37 16 10 C -0.08 -1.59 5.67 37.16 0.21 -1.38 16 11 C -0.10 -1.52 5.20 -26.74 -0.14 -1.66 16 12 C 0.07 0.85 4.93 -3.83 -0.02 0.83 16 13 N -0.54 -6.56 4.33 -238.01 -1.03 -7.59 16 14 C 0.06 0.61 4.84 -6.04 -0.03 0.58 16 15 C -0.11 -0.94 5.77 -27.36 -0.16 -1.10 16 16 C -0.03 -0.29 6.03 -26.86 -0.16 -0.45 16 17 C -0.01 -0.17 6.54 -35.16 -0.23 -0.40 16 18 O -0.18 -2.08 10.66 6.16 0.07 -2.01 16 19 C -0.06 -0.59 12.10 29.55 0.36 -0.23 16 20 C -0.19 -2.22 10.91 -39.89 -0.44 -2.66 16 21 C -0.16 -1.99 5.64 -104.71 -0.59 -2.58 16 22 C 0.12 1.45 5.48 -4.10 -0.02 1.43 16 23 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 24 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 25 H 0.07 1.32 8.14 -51.91 -0.42 0.90 16 26 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.07 1.03 6.25 -51.93 -0.32 0.71 16 28 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 29 H 0.08 0.94 7.68 -51.93 -0.40 0.54 16 30 H 0.03 0.23 7.54 -51.93 -0.39 -0.16 16 31 H 0.07 0.65 7.53 -51.93 -0.39 0.26 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.78 7.92 -51.93 -0.41 0.36 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.65 7.88 -51.93 -0.41 0.24 16 36 H 0.20 1.31 8.06 -52.48 -0.42 0.89 16 37 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.09 1.14 5.88 -51.92 -0.31 0.83 16 39 H 0.05 0.51 7.76 -51.93 -0.40 0.11 16 LS Contribution 325.45 15.07 4.90 4.90 Total: -1.00 -32.33 325.45 -9.08 -41.41 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -5.99 Total: -0.78 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -1.00 Total: -19.37 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: -0.26 Total: -33.78 kcal Atomic # 8 Polarization: -2.08 SS G_CDS: 0.07 Total: -2.01 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 16.99 kcal Atomic # 16 Polarization: -5.28 SS G_CDS: -2.09 Total: -7.37 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.33 -9.08 -41.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288674626.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.591 kcal (2) G-P(sol) polarization free energy of solvation -32.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds