Wall clock time and date at job start Tue Mar 31 2020 05:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35685 * 117.00180 * 2 1 4 4 N 1.32280 * 119.68255 * 0.24318 * 3 2 1 5 5 C 1.31930 * 121.64639 * 180.28675 * 4 3 2 6 6 C 1.50698 * 119.58502 * 179.75138 * 5 4 3 7 7 C 1.38091 * 120.83384 * 359.73029 * 5 4 3 8 8 C 1.38783 * 119.28682 * 0.02562 * 7 5 4 9 9 C 1.50701 * 120.75595 * 179.97438 * 8 7 5 10 10 C 1.38423 * 118.48549 * 359.97438 * 8 7 5 11 11 C 1.50701 * 120.44190 * 179.97438 * 10 8 7 12 12 S 1.81404 * 109.47098 * 90.00304 * 11 10 8 13 13 C 1.81397 * 103.00143 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47527 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47289 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00014 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99840 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99971 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99928 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46841 * 60.00185 * 19 17 15 21 21 H 1.48499 * 109.46970 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47074 * 300.00089 * 19 17 15 23 23 H 1.08991 * 109.47149 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46670 * 300.00265 * 1 2 3 25 25 H 1.09004 * 109.46920 * 59.99594 * 1 2 3 26 26 H 1.09002 * 109.47467 * 269.98359 * 6 5 4 27 27 H 1.08999 * 109.47067 * 29.97857 * 6 5 4 28 28 H 1.08997 * 109.47200 * 149.97795 * 6 5 4 29 29 H 1.07997 * 120.35909 * 180.02562 * 7 5 4 30 30 H 1.09002 * 109.47148 * 270.01670 * 9 8 7 31 31 H 1.08994 * 109.47318 * 30.02036 * 9 8 7 32 32 H 1.09004 * 109.46968 * 150.02061 * 9 8 7 33 33 H 1.09002 * 109.47060 * 210.00254 * 11 10 8 34 34 H 1.09001 * 109.47380 * 330.00341 * 11 10 8 35 35 H 1.09007 * 109.46846 * 299.99983 * 13 12 11 36 36 H 1.09007 * 109.47453 * 59.99610 * 13 12 11 37 37 H 1.08996 * 109.46730 * 300.00157 * 14 13 12 38 38 H 1.08998 * 109.46901 * 59.99649 * 14 13 12 39 39 H 0.97000 * 119.99838 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3185 2.3143 0.0049 5 6 1.8768 3.5097 -0.0006 6 6 1.0043 4.7384 -0.0003 7 6 3.2506 3.6491 -0.0060 8 6 4.0483 2.5135 -0.0063 9 6 5.5510 2.6272 -0.0128 10 6 3.4322 1.2739 -0.0005 11 6 4.2558 0.0119 -0.0012 12 16 4.5939 -0.4904 1.7088 13 6 5.5773 -2.0008 1.5037 14 6 5.9498 -2.5578 2.8791 15 6 6.7662 -3.8128 2.7086 16 1 6.9961 -4.1771 1.7183 17 6 7.2188 -4.4967 3.8171 18 7 6.9384 -4.0534 5.0230 19 14 8.2303 -6.0529 3.6058 20 1 9.4681 -5.7395 2.8474 21 1 8.5918 -6.5934 4.9408 22 1 7.4357 -7.0624 2.8611 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.7900 5.0321 -1.0279 27 1 0.0702 4.5206 0.5175 28 1 1.5215 5.5511 0.5096 29 1 3.6996 4.6314 -0.0100 30 1 5.9091 2.6522 -1.0420 31 1 5.8483 3.5431 0.4977 32 1 5.9826 1.7683 0.5012 33 1 3.7067 -0.7800 -0.5107 34 1 5.1974 0.1927 -0.5197 35 1 4.9947 -2.7422 0.9566 36 1 6.4859 -1.7701 0.9473 37 1 6.5324 -1.8163 3.4257 38 1 5.0415 -2.7884 3.4358 39 1 7.2565 -4.5347 5.8028 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289352684.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:12 Heat of formation + Delta-G solvation = -28.031295 kcal Electronic energy + Delta-G solvation = -19119.895571 eV Core-core repulsion = 16153.358521 eV Total energy + Delta-G solvation = -2966.537050 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.87387 -38.11597 -34.99826 -33.64677 -32.28273 -30.82555 -30.06184 -27.96608 -27.31797 -25.54668 -24.92075 -22.54862 -21.21403 -20.63500 -17.91047 -17.17633 -16.48493 -16.21556 -15.72530 -15.09854 -14.48974 -14.48887 -14.31860 -14.04214 -13.77609 -13.57592 -13.18508 -13.00789 -12.66094 -12.56001 -12.38531 -12.27932 -11.99062 -11.83997 -11.51803 -11.43973 -10.99934 -10.98883 -10.63246 -10.15115 -9.75955 -9.74345 -9.56940 -9.25626 -9.01487 -8.39496 -8.25722 -7.04937 -6.03438 -4.07977 0.90654 1.22858 2.39158 3.07426 3.29793 3.31774 3.36492 3.39248 3.70409 4.06732 4.43693 4.52660 4.77979 4.82913 4.98415 5.19779 5.23096 5.27694 5.28393 5.31842 5.34614 5.44274 5.50261 5.53346 5.60151 5.70290 5.82906 5.93649 6.00450 6.05151 6.23794 6.27798 6.44220 6.77870 7.23010 7.59865 7.69425 7.81322 7.93186 8.30581 8.96925 9.55583 11.07333 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028498 B = 0.003394 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.291941 B = 8248.895940 C = 8773.033955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.296 6.296 3 C 0.343 3.657 4 N -0.545 5.545 5 C 0.164 3.836 6 C -0.102 4.102 7 C -0.212 4.212 8 C 0.009 3.991 9 C -0.124 4.124 10 C -0.141 4.141 11 C -0.039 4.039 12 S -0.274 6.274 13 C -0.061 4.061 14 C 0.039 3.961 15 C -0.521 4.521 16 H 0.057 0.943 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 H 0.096 0.904 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.136 0.864 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.112 16.509 -12.817 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.202 6.202 3 C 0.162 3.838 4 N -0.270 5.270 5 C 0.027 3.973 6 C -0.159 4.159 7 C -0.233 4.233 8 C 0.000 4.000 9 C -0.181 4.181 10 C -0.145 4.145 11 C -0.187 4.187 12 S -0.044 6.044 13 C -0.209 4.209 14 C 0.000 4.000 15 C -0.561 4.561 16 H 0.075 0.925 17 C -0.143 4.143 18 N -0.530 5.530 19 Si 0.724 3.276 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 H 0.114 0.886 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.154 0.846 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.198 16.582 -11.675 23.166 hybrid contribution 1.485 -1.346 -1.129 2.300 sum -9.713 15.236 -12.804 22.145 Atomic orbital electron populations 1.22844 0.77467 1.02972 1.02105 1.86323 1.22601 1.24036 1.87215 1.19498 0.88566 0.84644 0.91076 1.67133 1.40595 0.98256 1.21043 1.20855 0.91904 0.91849 0.92660 1.20709 0.99305 0.92912 1.02991 1.21615 0.93725 0.99162 1.08784 1.20005 0.97027 0.91084 0.91874 1.20943 0.89774 1.04445 1.02903 1.19136 0.90778 0.94971 1.09595 1.21974 1.01351 0.96813 0.98518 1.87119 1.71726 1.36261 1.09324 1.23695 0.98627 0.93009 1.05562 1.18883 0.97217 0.95576 0.88318 1.21072 1.33528 1.08802 0.92724 0.92517 1.25012 0.96256 0.97799 0.95184 1.69963 1.45629 1.39751 0.97614 0.86588 0.80550 0.83198 0.77256 1.20164 1.21177 1.20155 0.88594 0.92302 0.92644 0.90398 0.90537 0.90498 0.84650 0.90407 0.90635 0.89459 0.89221 0.89573 0.91398 0.91472 0.95598 0.95574 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.38 101.05 1.05 1.52 16 2 O -0.30 -4.46 9.54 -18.76 -0.18 -4.64 16 3 C 0.34 5.22 7.47 -17.13 -0.13 5.09 16 4 N -0.55 -7.61 9.13 -9.55 -0.09 -7.70 16 5 C 0.16 1.92 6.78 -82.60 -0.56 1.36 16 6 C -0.10 -0.79 10.17 36.00 0.37 -0.43 16 7 C -0.21 -2.35 9.44 -39.43 -0.37 -2.73 16 8 C 0.01 0.12 5.91 -104.35 -0.62 -0.50 16 9 C -0.12 -1.30 9.28 36.01 0.33 -0.96 16 10 C -0.14 -2.08 5.17 -104.32 -0.54 -2.62 16 11 C -0.04 -0.60 5.15 36.01 0.19 -0.41 16 12 S -0.27 -5.34 21.46 -107.50 -2.31 -7.65 16 13 C -0.06 -1.32 5.88 37.16 0.22 -1.10 16 14 C 0.04 1.03 4.98 -27.89 -0.14 0.89 16 15 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 19 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 25 H 0.05 0.57 8.11 -51.93 -0.42 0.15 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 29 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 32 H 0.09 1.07 6.57 -51.93 -0.34 0.73 16 33 H 0.09 1.39 7.54 -51.92 -0.39 1.00 16 34 H 0.09 1.18 6.81 -51.92 -0.35 0.82 16 35 H 0.07 1.42 8.14 -51.92 -0.42 1.00 16 36 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 342.00 15.07 5.15 5.15 Total: -1.00 -32.37 342.00 -8.43 -40.81 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -6.11 Total: -2.92 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -0.61 Total: -13.38 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.65 Total: -33.94 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.18 Total: -4.64 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -5.34 SS G_CDS: -2.31 Total: -7.65 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.37 -8.43 -40.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289352684.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.774 kcal (2) G-P(sol) polarization free energy of solvation -32.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds