Wall clock time and date at job start Tue Mar 31 2020 05:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35685 * 117.00180 * 2 1 4 4 N 1.32280 * 119.68255 * 0.24318 * 3 2 1 5 5 C 1.31930 * 121.64639 * 180.28675 * 4 3 2 6 6 C 1.50698 * 119.58502 * 179.75138 * 5 4 3 7 7 C 1.38091 * 120.83384 * 359.73029 * 5 4 3 8 8 C 1.38783 * 119.28682 * 0.02562 * 7 5 4 9 9 C 1.50701 * 120.75595 * 179.97438 * 8 7 5 10 10 C 1.38423 * 118.48549 * 359.97438 * 8 7 5 11 11 C 1.50701 * 120.44190 * 179.97438 * 10 8 7 12 12 S 1.81404 * 109.47098 * 90.00304 * 11 10 8 13 13 C 1.81397 * 103.00143 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47527 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47289 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00014 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99840 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99971 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99928 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46841 * 60.00185 * 19 17 15 21 21 H 1.48499 * 109.46970 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47074 * 300.00089 * 19 17 15 23 23 H 1.08991 * 109.47149 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46670 * 300.00265 * 1 2 3 25 25 H 1.09004 * 109.46920 * 59.99594 * 1 2 3 26 26 H 1.09002 * 109.47467 * 269.98359 * 6 5 4 27 27 H 1.08999 * 109.47067 * 29.97857 * 6 5 4 28 28 H 1.08997 * 109.47200 * 149.97795 * 6 5 4 29 29 H 1.07997 * 120.35909 * 180.02562 * 7 5 4 30 30 H 1.09002 * 109.47148 * 270.01670 * 9 8 7 31 31 H 1.08994 * 109.47318 * 30.02036 * 9 8 7 32 32 H 1.09004 * 109.46968 * 150.02061 * 9 8 7 33 33 H 1.09002 * 109.47060 * 210.00254 * 11 10 8 34 34 H 1.09001 * 109.47380 * 330.00341 * 11 10 8 35 35 H 1.09007 * 109.46846 * 299.99983 * 13 12 11 36 36 H 1.09007 * 109.47453 * 59.99610 * 13 12 11 37 37 H 1.08996 * 109.46730 * 300.00157 * 14 13 12 38 38 H 1.08998 * 109.46901 * 59.99649 * 14 13 12 39 39 H 0.97000 * 119.99838 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3185 2.3143 0.0049 5 6 1.8768 3.5097 -0.0006 6 6 1.0043 4.7384 -0.0003 7 6 3.2506 3.6491 -0.0060 8 6 4.0483 2.5135 -0.0063 9 6 5.5510 2.6272 -0.0128 10 6 3.4322 1.2739 -0.0005 11 6 4.2558 0.0119 -0.0012 12 16 4.5939 -0.4904 1.7088 13 6 5.5773 -2.0008 1.5037 14 6 5.9498 -2.5578 2.8791 15 6 6.7662 -3.8128 2.7086 16 1 6.9961 -4.1771 1.7183 17 6 7.2188 -4.4967 3.8171 18 7 6.9384 -4.0534 5.0230 19 14 8.2303 -6.0529 3.6058 20 1 9.4681 -5.7395 2.8474 21 1 8.5918 -6.5934 4.9408 22 1 7.4357 -7.0624 2.8611 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.7900 5.0321 -1.0279 27 1 0.0702 4.5206 0.5175 28 1 1.5215 5.5511 0.5096 29 1 3.6996 4.6314 -0.0100 30 1 5.9091 2.6522 -1.0420 31 1 5.8483 3.5431 0.4977 32 1 5.9826 1.7683 0.5012 33 1 3.7067 -0.7800 -0.5107 34 1 5.1974 0.1927 -0.5197 35 1 4.9947 -2.7422 0.9566 36 1 6.4859 -1.7701 0.9473 37 1 6.5324 -1.8163 3.4257 38 1 5.0415 -2.7884 3.4358 39 1 7.2565 -4.5347 5.8028 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289352684.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:11 Heat of formation + Delta-G solvation = -47.785303 kcal Electronic energy + Delta-G solvation = -19120.752169 eV Core-core repulsion = 16153.358521 eV Total energy + Delta-G solvation = -2967.393648 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.84562 -39.10814 -35.95997 -35.77072 -33.20822 -32.90694 -30.97678 -28.89019 -28.18606 -27.37688 -26.15888 -23.62288 -23.01311 -21.69574 -18.89599 -18.67274 -18.16243 -17.35578 -16.97435 -16.51225 -16.22552 -15.69903 -15.37201 -15.31515 -14.88809 -14.79659 -14.33783 -14.15818 -13.85118 -13.60300 -13.50691 -13.28098 -13.14569 -13.13385 -12.89082 -12.71509 -12.54455 -12.37657 -12.14934 -11.89942 -11.69723 -11.43931 -10.89873 -10.63028 -10.60355 -10.31040 -9.28525 -8.61672 -8.22981 -6.37045 -0.14420 0.27120 0.99972 1.40804 1.44347 1.52523 1.78155 2.11877 2.40543 2.72792 3.09885 3.17492 3.67281 3.75350 3.81771 4.03957 4.26426 4.36335 4.38709 4.39491 4.40761 4.42662 4.56722 4.65944 4.68980 4.76597 4.79077 4.82677 4.87510 5.02134 5.06142 5.26236 5.35259 5.37467 5.49239 5.58927 5.73359 6.10812 6.24204 6.77011 6.84998 7.32379 8.88667 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028498 B = 0.003394 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.291941 B = 8248.895940 C = 8773.033955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.319 6.319 3 C 0.324 3.676 4 N -0.561 5.561 5 C 0.157 3.843 6 C -0.099 4.099 7 C -0.210 4.210 8 C 0.007 3.993 9 C -0.123 4.123 10 C -0.171 4.171 11 C -0.015 4.015 12 S -0.307 6.307 13 C -0.049 4.049 14 C 0.047 3.953 15 C -0.544 4.544 16 H 0.068 0.932 17 C 0.001 3.999 18 N -0.932 5.932 19 Si 0.973 3.027 20 H -0.263 1.263 21 H -0.283 1.283 22 H -0.265 1.265 23 H 0.115 0.885 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.095 0.905 27 H 0.072 0.928 28 H 0.101 0.899 29 H 0.171 0.829 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.080 0.920 37 H -0.003 1.003 38 H -0.008 1.008 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.686 17.744 -14.544 24.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.226 6.226 3 C 0.144 3.856 4 N -0.286 5.286 5 C 0.021 3.979 6 C -0.156 4.156 7 C -0.230 4.230 8 C -0.002 4.002 9 C -0.179 4.179 10 C -0.175 4.175 11 C -0.163 4.163 12 S -0.077 6.077 13 C -0.197 4.197 14 C 0.008 3.992 15 C -0.583 4.583 16 H 0.086 0.914 17 C -0.197 4.197 18 N -0.572 5.572 19 Si 0.796 3.204 20 H -0.188 1.188 21 H -0.208 1.208 22 H -0.190 1.190 23 H 0.133 0.867 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.113 0.887 27 H 0.091 0.909 28 H 0.119 0.881 29 H 0.188 0.812 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.015 0.985 38 H 0.010 0.990 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.774 17.815 -13.413 24.766 hybrid contribution 1.239 -1.548 -0.622 2.078 sum -9.535 16.267 -14.035 23.505 Atomic orbital electron populations 1.23009 0.75999 1.04302 1.02206 1.86279 1.24272 1.24663 1.87389 1.19741 0.89014 0.85070 0.91775 1.67208 1.40892 0.98760 1.21771 1.21635 0.93117 0.92247 0.90938 1.20830 0.98691 0.91707 1.04357 1.22014 0.93421 1.00191 1.07344 1.20371 0.98322 0.90792 0.90728 1.20993 0.88192 1.04464 1.04229 1.19219 0.90761 0.95347 1.12203 1.21908 1.02393 0.97249 0.94740 1.87170 1.71339 1.34995 1.14221 1.23330 0.99722 0.94248 1.02403 1.18649 0.95078 0.94924 0.90509 1.21528 1.33786 1.09560 0.93423 0.91403 1.26046 0.97418 1.01599 0.94676 1.70115 1.46905 1.41532 0.98636 0.85388 0.79016 0.78476 0.77485 1.18778 1.20805 1.19017 0.86702 0.92828 0.91830 0.88666 0.90914 0.88077 0.81161 0.88270 0.88675 0.91521 0.89614 0.87686 0.90994 0.90173 0.98451 0.98952 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.89 10.38 113.37 1.18 2.07 16 2 O -0.32 -9.78 9.54 -90.04 -0.86 -10.64 16 3 C 0.32 9.85 7.47 84.78 0.63 10.48 16 4 N -0.56 -15.22 9.13 -296.97 -2.71 -17.93 16 5 C 0.16 3.35 6.78 42.51 0.29 3.64 16 6 C -0.10 -1.24 10.17 71.24 0.72 -0.52 16 7 C -0.21 -4.05 9.44 22.37 0.21 -3.84 16 8 C 0.01 0.16 5.91 -19.69 -0.12 0.05 16 9 C -0.12 -2.28 9.28 71.24 0.66 -1.62 16 10 C -0.17 -4.97 5.17 -19.67 -0.10 -5.07 16 11 C -0.02 -0.47 5.15 71.24 0.37 -0.10 16 12 S -0.31 -12.25 21.46 -56.49 -1.21 -13.46 16 13 C -0.05 -2.16 5.88 71.98 0.42 -1.74 16 14 C 0.05 2.59 4.98 29.85 0.15 2.74 16 15 C -0.54 -31.33 9.11 25.60 0.23 -31.10 16 16 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 17 C 0.00 0.06 5.46 84.66 0.46 0.52 16 18 N -0.93 -57.86 13.29 21.45 0.28 -57.58 16 19 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 20 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 25 H 0.06 1.29 8.11 -2.39 -0.02 1.27 16 26 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.10 0.80 8.08 -2.39 -0.02 0.78 16 29 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 30 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.09 1.38 8.10 -2.39 -0.02 1.36 16 32 H 0.07 1.55 6.57 -2.39 -0.02 1.53 16 33 H 0.09 2.67 7.54 -2.39 -0.02 2.65 16 34 H 0.10 2.76 6.81 -2.39 -0.02 2.75 16 35 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 36 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 37 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H -0.01 -0.49 8.14 -2.39 -0.02 -0.50 16 39 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -72.14 342.00 3.66 -68.48 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 1.02 Total: 9.31 kcal Atomic # 6 Polarization: -29.60 SS G_CDS: 5.11 Total: -24.49 kcal Atomic # 7 Polarization: -73.08 SS G_CDS: -2.43 Total: -75.50 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -0.86 Total: -10.64 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: -12.25 SS G_CDS: -1.21 Total: -13.46 kcal Total: -72.14 3.66 -68.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289352684.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.698 kcal (2) G-P(sol) polarization free energy of solvation -72.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds