Wall clock time and date at job start Tue Mar 31 2020 05:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33386 * 125.20107 * 2 1 4 4 C 1.38424 * 114.92099 * 180.02562 * 3 2 1 5 5 C 1.33384 * 114.92035 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.20349 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46912 * 90.00228 * 6 5 4 8 8 C 1.50706 * 109.46735 * 180.02562 * 7 6 5 9 9 O 1.21273 * 120.00140 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99767 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00054 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47194 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47232 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99890 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99996 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00227 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46845 * 90.00227 * 18 16 14 20 20 H 1.48499 * 109.46907 * 209.99714 * 18 16 14 21 21 H 1.48495 * 109.46933 * 330.00015 * 18 16 14 22 22 S 1.75881 * 109.59619 * 0.24566 * 5 4 3 23 23 H 1.08999 * 109.47643 * 90.00043 * 1 2 3 24 24 H 1.09001 * 109.46764 * 209.99808 * 1 2 3 25 25 H 1.08997 * 109.46991 * 329.99797 * 1 2 3 26 26 H 1.08005 * 122.53979 * 0.02562 * 3 2 1 27 27 H 1.08005 * 122.53856 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.47152 * 330.00000 * 6 5 4 29 29 H 1.09001 * 109.46980 * 210.00100 * 6 5 4 30 30 H 1.09001 * 109.47194 * 299.99742 * 7 6 5 31 31 H 1.08992 * 109.47399 * 59.99914 * 7 6 5 32 32 H 0.97005 * 119.99680 * 359.97438 * 10 8 7 33 33 H 1.08998 * 109.47245 * 300.00495 * 11 10 8 34 34 H 1.09002 * 109.47021 * 59.99873 * 11 10 8 35 35 H 1.09001 * 109.47375 * 300.00051 * 12 11 10 36 36 H 1.09002 * 109.47045 * 60.00127 * 12 11 10 37 37 H 1.09001 * 109.47289 * 299.99925 * 13 12 11 38 38 H 1.09002 * 109.47153 * 60.00008 * 13 12 11 39 39 H 0.96993 * 120.00405 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 -0.0006 5 6 3.9751 -0.4476 -0.0005 6 6 5.3861 -0.9769 -0.0016 7 6 5.8648 -1.1557 1.4406 8 6 7.2761 -1.6844 1.4395 9 8 7.8429 -1.8977 0.3888 10 7 7.9079 -1.9212 2.6062 11 6 9.2795 -2.4357 2.6052 12 6 9.7583 -2.6144 4.0473 13 6 11.1910 -3.1511 4.0462 14 6 11.6624 -3.3277 5.4666 15 1 11.0059 -3.0813 6.2880 16 6 12.9322 -3.8028 5.7177 17 7 13.7319 -4.1024 4.7174 18 14 13.5167 -4.0209 7.4784 19 1 13.1809 -5.3901 7.9454 20 1 14.9873 -3.8239 7.5397 21 1 12.8467 -3.0224 8.3497 22 16 2.5211 -1.4371 -0.0068 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.8668 2.0895 0.0004 27 1 4.3721 1.6351 -0.0002 28 1 6.0384 -0.2714 -0.5162 29 1 5.4132 -1.9380 -0.5152 30 1 5.8377 -0.1946 1.9542 31 1 5.2125 -1.8611 1.9552 32 1 7.4543 -1.7509 3.4466 33 1 9.3068 -3.3965 2.0912 34 1 9.9319 -1.7300 2.0909 35 1 9.7311 -1.6533 4.5609 36 1 9.1060 -3.3199 4.5619 37 1 11.2187 -4.1121 3.5326 38 1 11.8431 -2.4452 3.5317 39 1 14.6253 -4.4362 4.8939 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290139986.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:39 Heat of formation + Delta-G solvation = -41.305331 kcal Electronic energy + Delta-G solvation = -18130.518401 eV Core-core repulsion = 15163.405745 eV Total energy + Delta-G solvation = -2967.112656 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.62383 -38.31103 -35.52046 -34.25152 -33.31663 -31.57234 -30.94487 -27.71846 -26.30071 -24.15290 -23.08852 -22.32631 -20.72892 -19.81565 -19.06933 -17.35753 -16.70069 -16.39479 -15.72950 -15.44417 -15.37176 -14.53239 -14.47141 -14.31230 -13.75620 -13.45829 -13.39341 -13.00364 -12.64272 -12.41959 -12.28430 -11.94371 -11.83512 -11.77930 -11.66715 -11.22979 -10.91161 -10.89351 -10.74267 -10.60574 -9.90766 -9.87803 -9.39036 -9.12851 -8.78642 -8.72949 -8.68822 -8.38087 -6.02631 -4.05846 0.70473 1.32955 1.73526 2.46007 2.77046 3.30152 3.36241 3.38192 3.41756 4.43188 4.48073 4.56334 4.76468 4.86518 4.89630 5.06756 5.12267 5.24277 5.32459 5.33041 5.40682 5.54962 5.60506 5.72938 5.77045 5.87071 5.95039 6.03231 6.15331 6.27709 6.48207 6.58798 6.82246 6.99386 7.62464 7.69826 7.74972 7.95992 8.35608 8.39599 9.00812 9.58355 11.08614 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.046226 B = 0.002130 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.580238 B =13142.438668 C =13387.996601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.186 4.186 3 C -0.138 4.138 4 C -0.137 4.137 5 C -0.171 4.171 6 C -0.033 4.033 7 C -0.136 4.136 8 C 0.507 3.493 9 O -0.546 6.546 10 N -0.727 5.727 11 C 0.115 3.885 12 C -0.121 4.121 13 C 0.023 3.977 14 C -0.523 4.523 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.893 5.893 18 Si 0.894 3.106 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 S 0.096 5.904 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.137 0.863 27 H 0.140 0.860 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.399 0.601 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.425 9.457 -8.800 29.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.303 4.303 3 C -0.169 4.169 4 C -0.167 4.167 5 C -0.288 4.288 6 C -0.073 4.073 7 C -0.176 4.176 8 C 0.293 3.707 9 O -0.424 6.424 10 N -0.377 5.377 11 C -0.007 4.007 12 C -0.159 4.159 13 C -0.014 4.014 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 S 0.360 5.640 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.155 0.845 27 H 0.157 0.843 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.232 0.768 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -26.105 7.679 -9.606 28.856 hybrid contribution 0.520 1.460 1.435 2.112 sum -25.585 9.139 -8.171 28.370 Atomic orbital electron populations 1.20326 0.87946 1.03105 1.02675 1.24491 0.99921 0.95853 1.10052 1.20065 0.92939 0.99157 1.04694 1.20113 0.96236 0.95990 1.04365 1.24507 0.98590 0.96409 1.09298 1.19871 0.88662 1.02750 0.96033 1.21684 0.94019 1.03313 0.98621 1.20582 0.88118 0.77995 0.84049 1.90704 1.68033 1.52370 1.31274 1.46239 1.16777 1.66502 1.08208 1.21646 0.80410 0.98938 0.99721 1.21887 1.00832 1.00863 0.92300 1.19034 0.88663 0.96399 0.97346 1.21202 0.98921 1.43656 0.92313 0.92647 1.25040 0.96862 0.95512 0.97107 1.69965 1.08071 1.44568 1.30643 0.86574 0.77884 0.78462 0.84944 1.20657 1.21197 1.19903 1.84337 0.96646 1.09464 1.73560 0.90833 0.91349 0.90596 0.84526 0.84271 0.89045 0.89904 0.88631 0.88860 0.76763 0.91793 0.91791 0.92734 0.92735 0.96278 0.96264 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.38 36.01 0.37 -0.08 16 2 C -0.19 -1.51 6.51 -36.00 -0.23 -1.74 16 3 C -0.14 -1.13 10.05 -41.21 -0.41 -1.54 16 4 C -0.14 -1.21 10.05 -41.21 -0.41 -1.62 16 5 C -0.17 -1.62 5.76 -36.00 -0.21 -1.83 16 6 C -0.03 -0.34 5.00 -27.88 -0.14 -0.48 16 7 C -0.14 -1.33 5.68 -27.88 -0.16 -1.49 16 8 C 0.51 7.14 7.83 -10.98 -0.09 7.05 16 9 O -0.55 -9.92 15.98 5.56 0.09 -9.84 16 10 N -0.73 -10.14 5.56 -60.30 -0.33 -10.47 16 11 C 0.12 2.03 5.67 -4.05 -0.02 2.00 16 12 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 13 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 14 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 18 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 S 0.10 0.86 23.31 -107.50 -2.51 -1.65 16 23 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 27 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 28 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 29 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.40 4.40 8.47 -40.82 -0.35 4.06 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 347.14 15.07 5.23 5.23 Total: -1.00 -32.51 347.14 -10.02 -42.53 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.22 Total: -1.01 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -1.99 Total: -15.17 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.40 Total: -36.57 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.51 -10.02 -42.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290139986.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.226 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds