Wall clock time and date at job start Tue Mar 31 2020 05:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33386 * 125.20107 * 2 1 4 4 C 1.38424 * 114.92099 * 180.02562 * 3 2 1 5 5 C 1.33384 * 114.92035 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.20349 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46912 * 90.00228 * 6 5 4 8 8 C 1.50706 * 109.46735 * 180.02562 * 7 6 5 9 9 O 1.21273 * 120.00140 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99767 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00054 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47194 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47232 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99890 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99996 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00227 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46845 * 90.00227 * 18 16 14 20 20 H 1.48499 * 109.46907 * 209.99714 * 18 16 14 21 21 H 1.48495 * 109.46933 * 330.00015 * 18 16 14 22 22 S 1.75881 * 109.59619 * 0.24566 * 5 4 3 23 23 H 1.08999 * 109.47643 * 90.00043 * 1 2 3 24 24 H 1.09001 * 109.46764 * 209.99808 * 1 2 3 25 25 H 1.08997 * 109.46991 * 329.99797 * 1 2 3 26 26 H 1.08005 * 122.53979 * 0.02562 * 3 2 1 27 27 H 1.08005 * 122.53856 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.47152 * 330.00000 * 6 5 4 29 29 H 1.09001 * 109.46980 * 210.00100 * 6 5 4 30 30 H 1.09001 * 109.47194 * 299.99742 * 7 6 5 31 31 H 1.08992 * 109.47399 * 59.99914 * 7 6 5 32 32 H 0.97005 * 119.99680 * 359.97438 * 10 8 7 33 33 H 1.08998 * 109.47245 * 300.00495 * 11 10 8 34 34 H 1.09002 * 109.47021 * 59.99873 * 11 10 8 35 35 H 1.09001 * 109.47375 * 300.00051 * 12 11 10 36 36 H 1.09002 * 109.47045 * 60.00127 * 12 11 10 37 37 H 1.09001 * 109.47289 * 299.99925 * 13 12 11 38 38 H 1.09002 * 109.47153 * 60.00008 * 13 12 11 39 39 H 0.96993 * 120.00405 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 -0.0006 5 6 3.9751 -0.4476 -0.0005 6 6 5.3861 -0.9769 -0.0016 7 6 5.8648 -1.1557 1.4406 8 6 7.2761 -1.6844 1.4395 9 8 7.8429 -1.8977 0.3888 10 7 7.9079 -1.9212 2.6062 11 6 9.2795 -2.4357 2.6052 12 6 9.7583 -2.6144 4.0473 13 6 11.1910 -3.1511 4.0462 14 6 11.6624 -3.3277 5.4666 15 1 11.0059 -3.0813 6.2880 16 6 12.9322 -3.8028 5.7177 17 7 13.7319 -4.1024 4.7174 18 14 13.5167 -4.0209 7.4784 19 1 13.1809 -5.3901 7.9454 20 1 14.9873 -3.8239 7.5397 21 1 12.8467 -3.0224 8.3497 22 16 2.5211 -1.4371 -0.0068 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.8668 2.0895 0.0004 27 1 4.3721 1.6351 -0.0002 28 1 6.0384 -0.2714 -0.5162 29 1 5.4132 -1.9380 -0.5152 30 1 5.8377 -0.1946 1.9542 31 1 5.2125 -1.8611 1.9552 32 1 7.4543 -1.7509 3.4466 33 1 9.3068 -3.3965 2.0912 34 1 9.9319 -1.7300 2.0909 35 1 9.7311 -1.6533 4.5609 36 1 9.1060 -3.3199 4.5619 37 1 11.2187 -4.1121 3.5326 38 1 11.8431 -2.4452 3.5317 39 1 14.6253 -4.4362 4.8939 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290139986.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:39 Heat of formation + Delta-G solvation = -60.425499 kcal Electronic energy + Delta-G solvation = -18131.347514 eV Core-core repulsion = 15163.405745 eV Total energy + Delta-G solvation = -2967.941768 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.80134 -38.97247 -37.02425 -35.19503 -35.05160 -33.08500 -31.87089 -29.03281 -27.56548 -25.28892 -24.28910 -23.24454 -22.31532 -21.12504 -19.70435 -18.56513 -18.21188 -17.51732 -16.88557 -16.85084 -16.41558 -16.04860 -15.84507 -15.01305 -14.70076 -14.54533 -14.26694 -13.98648 -13.82242 -13.60434 -13.53840 -13.32612 -13.05195 -12.74571 -12.55924 -12.52235 -12.43986 -12.36617 -11.95178 -11.67989 -11.59902 -11.56535 -11.25021 -10.85795 -10.56000 -10.09028 -9.39356 -9.33548 -8.19971 -6.31651 0.06125 0.68769 1.09663 1.41475 1.42906 1.53915 1.63851 1.82608 2.25145 2.42712 3.13613 3.63928 3.95240 4.01698 4.08373 4.13990 4.21145 4.30889 4.45488 4.54739 4.55727 4.68656 4.75381 4.78484 4.91433 4.94682 5.00330 5.07610 5.14144 5.16386 5.31667 5.40002 5.44768 5.52788 5.66550 5.69862 5.83528 6.21513 6.58810 6.85960 7.27063 7.37994 8.92068 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.046226 B = 0.002130 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.580238 B =13142.438668 C =13387.996601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.184 4.184 3 C -0.149 4.149 4 C -0.136 4.136 5 C -0.186 4.186 6 C -0.029 4.029 7 C -0.122 4.122 8 C 0.505 3.495 9 O -0.591 6.591 10 N -0.716 5.716 11 C 0.129 3.871 12 C -0.102 4.102 13 C 0.022 3.978 14 C -0.541 4.541 15 H 0.067 0.933 16 C -0.005 4.005 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.260 1.260 22 S 0.076 5.924 23 H 0.082 0.918 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.157 0.843 27 H 0.151 0.849 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.417 0.583 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.068 0.932 37 H -0.009 1.009 38 H -0.008 1.008 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.623 10.630 -7.102 31.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.301 4.301 3 C -0.179 4.179 4 C -0.166 4.166 5 C -0.303 4.303 6 C -0.068 4.068 7 C -0.162 4.162 8 C 0.294 3.706 9 O -0.472 6.472 10 N -0.368 5.368 11 C 0.004 3.996 12 C -0.139 4.139 13 C -0.016 4.016 14 C -0.579 4.579 15 H 0.085 0.915 16 C -0.203 4.203 17 N -0.575 5.575 18 Si 0.793 3.207 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.184 1.184 22 S 0.340 5.660 23 H 0.100 0.900 24 H 0.091 0.909 25 H 0.109 0.891 26 H 0.174 0.826 27 H 0.168 0.832 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.139 0.861 31 H 0.131 0.869 32 H 0.254 0.746 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.010 0.990 38 H 0.010 0.990 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -28.345 8.866 -7.879 30.726 hybrid contribution 1.162 1.115 0.838 1.816 sum -27.182 9.981 -7.042 29.801 Atomic orbital electron populations 1.20437 0.86173 1.04058 1.03524 1.24873 1.01122 0.95129 1.09010 1.20319 0.92664 1.00162 1.04742 1.20360 0.97013 0.95967 1.03270 1.24390 0.98085 0.96803 1.11008 1.19741 0.89275 1.01791 0.96037 1.21663 0.90828 1.04735 0.98954 1.21342 0.89421 0.76843 0.83037 1.90690 1.69399 1.54222 1.32901 1.46029 1.15289 1.66089 1.09405 1.21213 0.82341 0.97958 0.98058 1.21594 0.97190 1.01460 0.93705 1.18958 0.92053 0.94604 0.95945 1.21683 0.99398 1.43295 0.93522 0.91491 1.26050 0.97167 0.95139 1.01905 1.70114 1.08530 1.45612 1.33268 0.85397 0.77233 0.78889 0.79211 1.19829 1.21046 1.18385 1.84386 0.97097 1.10490 1.74007 0.89965 0.90923 0.89100 0.82566 0.83161 0.89904 0.91447 0.86099 0.86889 0.74636 0.93442 0.93345 0.91303 0.91352 0.99045 0.98981 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.38 71.24 0.74 0.02 16 2 C -0.18 -2.62 6.51 24.59 0.16 -2.46 16 3 C -0.15 -2.09 10.05 21.22 0.21 -1.88 16 4 C -0.14 -2.14 10.05 21.22 0.21 -1.93 16 5 C -0.19 -3.31 5.76 24.59 0.14 -3.16 16 6 C -0.03 -0.57 5.00 29.85 0.15 -0.42 16 7 C -0.12 -2.17 5.68 29.85 0.17 -2.00 16 8 C 0.51 13.84 7.83 87.66 0.69 14.52 16 9 O -0.59 -21.85 15.98 -3.01 -0.05 -21.90 16 10 N -0.72 -19.04 5.56 -463.07 -2.57 -21.62 16 11 C 0.13 4.53 5.67 86.38 0.49 5.02 16 12 C -0.10 -3.90 5.27 30.59 0.16 -3.73 16 13 C 0.02 1.15 4.97 29.85 0.15 1.30 16 14 C -0.54 -30.23 9.11 25.60 0.23 -29.99 16 15 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 16 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 17 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 18 Si 0.97 43.81 29.54 68.60 2.03 45.83 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 22 S 0.08 1.29 23.31 -56.49 -1.32 -0.03 16 23 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 27 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 28 H 0.08 1.75 8.10 -2.39 -0.02 1.73 16 29 H 0.07 1.52 8.10 -2.39 -0.02 1.50 16 30 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.42 8.11 8.47 -92.70 -0.79 7.33 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 37 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 38 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 39 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -71.29 347.14 2.58 -68.70 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.24 Total: 10.56 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: 3.97 Total: -24.54 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -2.29 Total: -78.63 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.05 Total: -21.90 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -1.32 Total: -0.03 kcal Total: -71.29 2.58 -68.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290139986.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.277 kcal (2) G-P(sol) polarization free energy of solvation -71.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds