Wall clock time and date at job start Tue Mar 31 2020 05:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33388 * 125.20394 * 2 1 4 4 C 1.38423 * 114.91937 * 180.02562 * 3 2 1 5 5 C 1.33392 * 114.92361 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.20333 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47055 * 89.99738 * 6 5 4 8 8 C 1.50706 * 109.47238 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99507 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.46495 * 119.99828 * 0.02562 * 10 8 7 12 12 C 1.46496 * 119.99544 * 180.02562 * 10 8 7 13 13 H 1.09000 * 109.47627 * 359.97438 * 12 10 8 14 14 C 1.53004 * 109.47197 * 120.00416 * 12 10 8 15 15 C 1.50709 * 109.46998 * 239.99580 * 12 10 8 16 16 H 1.07995 * 119.99729 * 0.02562 * 15 12 10 17 17 C 1.37879 * 120.00162 * 179.97438 * 15 12 10 18 18 N 1.31513 * 119.99820 * 0.02562 * 17 15 12 19 19 Si 1.86793 * 120.00018 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47406 * 89.99912 * 19 17 15 21 21 H 1.48501 * 109.47196 * 210.00286 * 19 17 15 22 22 H 1.48505 * 109.47048 * 330.00131 * 19 17 15 23 23 S 1.75885 * 109.59243 * 0.24177 * 5 4 3 24 24 H 1.08996 * 109.47376 * 89.99630 * 1 2 3 25 25 H 1.08993 * 109.47213 * 210.00649 * 1 2 3 26 26 H 1.09003 * 109.47039 * 330.00293 * 1 2 3 27 27 H 1.08000 * 122.54013 * 0.02562 * 3 2 1 28 28 H 1.08001 * 122.53727 * 180.02562 * 4 3 2 29 29 H 1.09001 * 109.47328 * 330.00009 * 6 5 4 30 30 H 1.09004 * 109.47043 * 209.99819 * 6 5 4 31 31 H 1.09001 * 109.46832 * 59.99966 * 7 6 5 32 32 H 1.09000 * 109.47611 * 300.00263 * 7 6 5 33 33 H 1.08997 * 109.47477 * 90.00366 * 11 10 8 34 34 H 1.09004 * 109.46971 * 209.99938 * 11 10 8 35 35 H 1.08993 * 109.47768 * 330.00002 * 11 10 8 36 36 H 1.09002 * 109.47232 * 179.97438 * 14 12 10 37 37 H 1.09005 * 109.46541 * 299.99232 * 14 12 10 38 38 H 1.09000 * 109.47381 * 59.99177 * 14 12 10 39 39 H 0.97003 * 120.00218 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6379 0.8428 -0.0006 5 6 3.9751 -0.4478 -0.0005 6 6 5.3860 -0.9772 -0.0016 7 6 5.8648 -1.1558 1.4406 8 6 7.2756 -1.6858 1.4395 9 8 7.8424 -1.8991 0.3887 10 7 7.9073 -1.9227 2.6062 11 6 7.2223 -1.6655 3.8754 12 6 9.2789 -2.4373 2.6051 13 1 9.6182 -2.5652 1.5772 14 6 10.1958 -1.4470 3.3259 15 6 9.3175 -3.7659 3.3154 16 1 8.4109 -4.1851 3.7261 17 6 10.5100 -4.4467 3.4399 18 7 11.6139 -3.9364 2.9393 19 14 10.5576 -6.0938 4.3197 20 1 10.3231 -7.1851 3.3403 21 1 11.8869 -6.2769 4.9559 22 1 9.5008 -6.1289 5.3623 23 16 2.5209 -1.4372 -0.0066 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.8669 2.0895 0.0004 28 1 4.3721 1.6349 -0.0002 29 1 6.0384 -0.2717 -0.5162 30 1 5.4131 -1.9383 -0.5151 31 1 5.2124 -1.8613 1.9552 32 1 5.8376 -0.1948 1.9542 33 1 6.6915 -2.5639 4.1904 34 1 7.9549 -1.3915 4.6346 35 1 6.5111 -0.8499 3.7458 36 1 11.2163 -1.8301 3.3255 37 1 10.1679 -0.4860 2.8122 38 1 9.8563 -1.3194 4.3538 39 1 12.4529 -4.4152 3.0272 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290453933.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:42 Heat of formation + Delta-G solvation = -18.011628 kcal Electronic energy + Delta-G solvation = -19342.593045 eV Core-core repulsion = 16376.490480 eV Total energy + Delta-G solvation = -2966.102565 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.19412 -38.08887 -35.42694 -33.96859 -32.81811 -31.10500 -29.40029 -26.83417 -26.04591 -25.19390 -23.86389 -22.55755 -20.74038 -18.85083 -18.20386 -17.08345 -16.49417 -16.08730 -15.36678 -15.10717 -15.05982 -14.37418 -14.07590 -13.58696 -13.37963 -13.06817 -12.78050 -12.59802 -12.48615 -12.27421 -11.96721 -11.71619 -11.69134 -11.47989 -11.31039 -11.03651 -10.94391 -10.81891 -10.67258 -10.62964 -10.22881 -10.15336 -9.17112 -8.95960 -8.53495 -8.47168 -8.40126 -7.56636 -6.06221 -4.14142 0.91137 1.53188 1.94318 2.65897 3.27719 3.33843 3.35271 3.42606 3.98290 4.40686 4.68170 4.80847 5.03917 5.14132 5.23750 5.24912 5.25718 5.33800 5.46687 5.55202 5.64579 5.71973 5.84214 5.91637 6.08666 6.15657 6.23189 6.25833 6.31965 6.49248 6.77345 6.83317 7.07131 7.45163 7.53929 7.73123 8.02896 8.21317 8.55692 8.84867 9.07853 9.52498 10.99096 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032146 B = 0.003323 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.829658 B = 8422.981823 C = 8747.899817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.191 4.191 3 C -0.137 4.137 4 C -0.143 4.143 5 C -0.162 4.162 6 C -0.035 4.035 7 C -0.133 4.133 8 C 0.502 3.498 9 O -0.555 6.555 10 N -0.594 5.594 11 C 0.087 3.913 12 C 0.257 3.743 13 H 0.063 0.937 14 C -0.147 4.147 15 C -0.525 4.525 16 H 0.059 0.941 17 C 0.064 3.936 18 N -0.888 5.888 19 Si 0.898 3.102 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 S 0.095 5.905 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.135 0.865 28 H 0.139 0.861 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.093 0.907 37 H 0.011 0.989 38 H 0.030 0.970 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.107 9.356 -2.345 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.308 4.308 3 C -0.167 4.167 4 C -0.172 4.172 5 C -0.279 4.279 6 C -0.074 4.074 7 C -0.173 4.173 8 C 0.289 3.711 9 O -0.435 6.435 10 N -0.325 5.325 11 C -0.057 4.057 12 C 0.157 3.843 13 H 0.081 0.919 14 C -0.205 4.205 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.726 3.274 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.199 1.199 23 S 0.359 5.641 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.153 0.847 28 H 0.157 0.843 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.030 0.970 38 H 0.049 0.951 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.870 7.643 -2.894 20.564 hybrid contribution 0.336 0.618 0.706 0.997 sum -18.534 8.262 -2.188 20.410 Atomic orbital electron populations 1.20300 0.88087 1.02965 1.02529 1.24461 0.99812 0.95972 1.10581 1.20040 0.92961 0.99024 1.04676 1.20095 0.96151 0.96010 1.04974 1.24593 0.98752 0.96302 1.08287 1.19907 0.88234 1.02621 0.96669 1.21692 0.95269 1.02718 0.97668 1.20366 0.87661 0.78791 0.84270 1.90646 1.67975 1.53769 1.31060 1.48240 1.17026 1.62713 1.04495 1.21557 0.97165 0.99476 0.87552 1.18936 0.74993 0.91566 0.98855 0.91896 1.22095 1.04231 0.96322 0.97901 1.21332 0.94409 1.03772 1.36858 0.92321 1.24898 0.95456 0.97937 0.95542 1.69880 0.99108 1.38440 1.45248 0.86494 0.77313 0.83884 0.79693 1.20607 1.21128 1.19927 1.84350 0.96748 1.09451 1.73544 0.90969 0.91434 0.90735 0.84679 0.84342 0.89167 0.89958 0.89428 0.89282 0.93328 0.90905 0.92909 0.88813 0.96988 0.95121 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.38 36.01 0.37 -0.20 16 2 C -0.19 -1.92 6.51 -36.00 -0.23 -2.16 16 3 C -0.14 -1.38 10.05 -41.21 -0.41 -1.80 16 4 C -0.14 -1.60 10.05 -41.21 -0.41 -2.01 16 5 C -0.16 -2.01 5.76 -36.00 -0.21 -2.21 16 6 C -0.03 -0.49 5.00 -27.89 -0.14 -0.63 16 7 C -0.13 -1.97 4.23 -27.88 -0.12 -2.09 16 8 C 0.50 10.32 7.67 -10.98 -0.08 10.23 16 9 O -0.56 -13.58 15.31 5.56 0.09 -13.50 16 10 N -0.59 -12.72 2.75 -175.26 -0.48 -13.21 16 11 C 0.09 1.46 9.48 59.84 0.57 2.02 16 12 C 0.26 6.62 2.64 -69.08 -0.18 6.44 16 13 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 14 C -0.15 -3.54 8.95 37.16 0.33 -3.21 16 15 C -0.52 -14.34 8.37 -34.44 -0.29 -14.63 16 16 H 0.06 1.58 7.65 -52.49 -0.40 1.18 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 18 N -0.89 -25.34 11.32 55.43 0.63 -24.72 16 19 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 23 S 0.10 1.09 23.31 -107.50 -2.51 -1.42 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 28 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.09 1.30 8.10 -51.93 -0.42 0.88 16 30 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.09 1.21 8.11 -51.93 -0.42 0.79 16 32 H 0.09 1.15 7.40 -51.93 -0.38 0.76 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 1.24 6.43 -51.93 -0.33 0.91 16 35 H 0.05 0.70 6.44 -51.93 -0.33 0.36 16 36 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 37 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 334.94 15.07 5.05 5.05 Total: -1.00 -31.24 334.94 -8.98 -40.23 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -5.83 Total: -0.04 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -0.90 Total: -8.57 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.15 Total: -37.92 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.09 Total: -13.50 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.51 Total: -1.42 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.24 -8.98 -40.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290453933.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.215 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds