Wall clock time and date at job start Tue Mar 31 2020 05:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33388 * 125.20394 * 2 1 4 4 C 1.38423 * 114.91937 * 180.02562 * 3 2 1 5 5 C 1.33392 * 114.92361 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.20333 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47055 * 89.99738 * 6 5 4 8 8 C 1.50706 * 109.47238 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99507 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.46495 * 119.99828 * 0.02562 * 10 8 7 12 12 C 1.46496 * 119.99544 * 180.02562 * 10 8 7 13 13 H 1.09000 * 109.47627 * 359.97438 * 12 10 8 14 14 C 1.53004 * 109.47197 * 120.00416 * 12 10 8 15 15 C 1.50709 * 109.46998 * 239.99580 * 12 10 8 16 16 H 1.07995 * 119.99729 * 0.02562 * 15 12 10 17 17 C 1.37879 * 120.00162 * 179.97438 * 15 12 10 18 18 N 1.31513 * 119.99820 * 0.02562 * 17 15 12 19 19 Si 1.86793 * 120.00018 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47406 * 89.99912 * 19 17 15 21 21 H 1.48501 * 109.47196 * 210.00286 * 19 17 15 22 22 H 1.48505 * 109.47048 * 330.00131 * 19 17 15 23 23 S 1.75885 * 109.59243 * 0.24177 * 5 4 3 24 24 H 1.08996 * 109.47376 * 89.99630 * 1 2 3 25 25 H 1.08993 * 109.47213 * 210.00649 * 1 2 3 26 26 H 1.09003 * 109.47039 * 330.00293 * 1 2 3 27 27 H 1.08000 * 122.54013 * 0.02562 * 3 2 1 28 28 H 1.08001 * 122.53727 * 180.02562 * 4 3 2 29 29 H 1.09001 * 109.47328 * 330.00009 * 6 5 4 30 30 H 1.09004 * 109.47043 * 209.99819 * 6 5 4 31 31 H 1.09001 * 109.46832 * 59.99966 * 7 6 5 32 32 H 1.09000 * 109.47611 * 300.00263 * 7 6 5 33 33 H 1.08997 * 109.47477 * 90.00366 * 11 10 8 34 34 H 1.09004 * 109.46971 * 209.99938 * 11 10 8 35 35 H 1.08993 * 109.47768 * 330.00002 * 11 10 8 36 36 H 1.09002 * 109.47232 * 179.97438 * 14 12 10 37 37 H 1.09005 * 109.46541 * 299.99232 * 14 12 10 38 38 H 1.09000 * 109.47381 * 59.99177 * 14 12 10 39 39 H 0.97003 * 120.00218 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6379 0.8428 -0.0006 5 6 3.9751 -0.4478 -0.0005 6 6 5.3860 -0.9772 -0.0016 7 6 5.8648 -1.1558 1.4406 8 6 7.2756 -1.6858 1.4395 9 8 7.8424 -1.8991 0.3887 10 7 7.9073 -1.9227 2.6062 11 6 7.2223 -1.6655 3.8754 12 6 9.2789 -2.4373 2.6051 13 1 9.6182 -2.5652 1.5772 14 6 10.1958 -1.4470 3.3259 15 6 9.3175 -3.7659 3.3154 16 1 8.4109 -4.1851 3.7261 17 6 10.5100 -4.4467 3.4399 18 7 11.6139 -3.9364 2.9393 19 14 10.5576 -6.0938 4.3197 20 1 10.3231 -7.1851 3.3403 21 1 11.8869 -6.2769 4.9559 22 1 9.5008 -6.1289 5.3623 23 16 2.5209 -1.4372 -0.0066 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.8669 2.0895 0.0004 28 1 4.3721 1.6349 -0.0002 29 1 6.0384 -0.2717 -0.5162 30 1 5.4131 -1.9383 -0.5151 31 1 5.2124 -1.8613 1.9552 32 1 5.8376 -0.1948 1.9542 33 1 6.6915 -2.5639 4.1904 34 1 7.9549 -1.3915 4.6346 35 1 6.5111 -0.8499 3.7458 36 1 11.2163 -1.8301 3.3255 37 1 10.1679 -0.4860 2.8122 38 1 9.8563 -1.3194 4.3538 39 1 12.4529 -4.4152 3.0272 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290453933.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:41 Heat of formation + Delta-G solvation = -35.212306 kcal Electronic energy + Delta-G solvation = -19343.338923 eV Core-core repulsion = 16376.490480 eV Total energy + Delta-G solvation = -2966.848442 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.80754 -38.96492 -37.20817 -35.14153 -34.68498 -32.17650 -31.08677 -27.90771 -27.52949 -27.24928 -24.87539 -23.55313 -22.43417 -19.84948 -19.68987 -18.55352 -18.09248 -17.48803 -17.09098 -16.57089 -16.16650 -15.93311 -15.00152 -14.83378 -14.62698 -14.39074 -14.02267 -13.84189 -13.65745 -13.48815 -13.31701 -13.13397 -12.96660 -12.91508 -12.73040 -12.64140 -12.41689 -12.37984 -12.17520 -12.10612 -11.92640 -11.54892 -11.18562 -10.68381 -10.48373 -9.39051 -9.33387 -9.30712 -8.15320 -6.32152 0.07789 0.69691 1.11815 1.40421 1.41792 1.51755 1.80912 1.85318 2.33092 2.51350 3.12392 3.60801 3.99059 4.02342 4.08893 4.20706 4.42446 4.47916 4.58535 4.64246 4.73177 4.77173 4.79235 4.81710 4.88436 4.93600 5.04220 5.07287 5.08703 5.15422 5.32623 5.41838 5.46175 5.62782 5.67309 5.68571 6.03724 6.16171 6.76142 6.84517 7.31769 7.48849 8.88982 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032146 B = 0.003323 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.829658 B = 8422.981823 C = 8747.899817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.182 4.182 3 C -0.147 4.147 4 C -0.134 4.134 5 C -0.185 4.185 6 C -0.027 4.027 7 C -0.115 4.115 8 C 0.492 3.508 9 O -0.606 6.606 10 N -0.602 5.602 11 C 0.082 3.918 12 C 0.260 3.740 13 H 0.008 0.992 14 C -0.133 4.133 15 C -0.539 4.539 16 H 0.060 0.940 17 C 0.014 3.986 18 N -0.918 5.918 19 Si 0.965 3.035 20 H -0.282 1.282 21 H -0.279 1.279 22 H -0.261 1.261 23 S 0.071 5.929 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.092 0.908 27 H 0.160 0.840 28 H 0.151 0.849 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.021 0.979 38 H 0.048 0.952 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.763 10.326 -0.878 24.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.299 4.299 3 C -0.177 4.177 4 C -0.164 4.164 5 C -0.302 4.302 6 C -0.066 4.066 7 C -0.155 4.155 8 C 0.281 3.719 9 O -0.489 6.489 10 N -0.333 5.333 11 C -0.060 4.060 12 C 0.157 3.843 13 H 0.026 0.974 14 C -0.191 4.191 15 C -0.578 4.578 16 H 0.078 0.922 17 C -0.186 4.186 18 N -0.557 5.557 19 Si 0.790 3.210 20 H -0.208 1.208 21 H -0.205 1.205 22 H -0.185 1.185 23 S 0.335 5.665 24 H 0.101 0.899 25 H 0.090 0.910 26 H 0.111 0.889 27 H 0.178 0.822 28 H 0.168 0.832 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.137 0.863 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.040 0.960 38 H 0.067 0.933 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.559 8.630 -1.398 23.264 hybrid contribution 1.104 0.367 0.189 1.179 sum -20.454 8.997 -1.209 22.378 Atomic orbital electron populations 1.20436 0.85959 1.04100 1.03565 1.24885 1.01132 0.94898 1.08982 1.20307 0.92402 1.00246 1.04711 1.20362 0.97181 0.95720 1.03174 1.24332 0.97801 0.96949 1.11077 1.19698 0.89589 1.01447 0.95892 1.21637 0.90990 1.04048 0.98809 1.21400 0.89527 0.77793 0.83147 1.90618 1.69618 1.55764 1.32858 1.48268 1.15839 1.62463 1.06680 1.21817 0.97591 1.01355 0.85211 1.18530 0.77937 0.92178 0.95611 0.97437 1.21878 1.02336 0.96062 0.98853 1.21598 0.94557 1.04684 1.36937 0.92225 1.25752 0.95091 1.01478 0.96242 1.70024 0.99629 1.39875 1.46189 0.85456 0.77808 0.79133 0.78634 1.20849 1.20466 1.18530 1.84423 0.97175 1.10800 1.74096 0.89897 0.90977 0.88900 0.82204 0.83170 0.90092 0.92076 0.87784 0.86301 0.92775 0.91120 0.88576 0.91451 0.96024 0.93267 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.38 71.24 0.74 -0.17 16 2 C -0.18 -3.17 6.51 24.59 0.16 -3.01 16 3 C -0.15 -2.52 10.05 21.22 0.21 -2.31 16 4 C -0.13 -2.69 10.05 21.22 0.21 -2.48 16 5 C -0.18 -4.33 5.76 24.59 0.14 -4.19 16 6 C -0.03 -0.74 5.00 29.85 0.15 -0.59 16 7 C -0.11 -3.24 4.23 29.85 0.13 -3.11 16 8 C 0.49 20.39 7.67 87.66 0.67 21.06 16 9 O -0.61 -31.09 15.31 -3.02 -0.05 -31.13 16 10 N -0.60 -25.75 2.75 -826.80 -2.28 -28.02 16 11 C 0.08 2.59 9.48 127.77 1.21 3.80 16 12 C 0.26 13.77 2.64 44.25 0.12 13.89 16 13 H 0.01 0.49 6.90 -2.39 -0.02 0.47 16 14 C -0.13 -6.49 8.95 71.98 0.64 -5.84 16 15 C -0.54 -29.85 8.37 25.60 0.21 -29.64 16 16 H 0.06 3.21 7.65 -2.91 -0.02 3.18 16 17 C 0.01 0.77 5.30 84.66 0.45 1.22 16 18 N -0.92 -53.71 11.32 21.45 0.24 -53.47 16 19 Si 0.96 43.57 29.54 68.60 2.03 45.59 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 23 S 0.07 1.54 23.31 -56.49 -1.32 0.22 16 24 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 28 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 29 H 0.08 2.37 8.10 -2.39 -0.02 2.35 16 30 H 0.06 1.94 8.10 -2.38 -0.02 1.92 16 31 H 0.10 2.64 8.11 -2.39 -0.02 2.62 16 32 H 0.12 2.67 7.40 -2.39 -0.02 2.65 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.07 2.25 6.43 -2.38 -0.02 2.24 16 35 H 0.10 2.17 6.44 -2.39 -0.02 2.16 16 36 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 37 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.05 2.16 6.66 -2.39 -0.02 2.15 16 39 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -70.51 334.94 4.71 -65.80 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 1.03 Total: 12.36 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: 5.05 Total: -11.36 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -2.03 Total: -81.49 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.05 Total: -31.13 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -1.32 Total: 0.22 kcal Total: -70.51 4.71 -65.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290453933.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.590 kcal (2) G-P(sol) polarization free energy of solvation -70.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds