Wall clock time and date at job start Tue Mar 31 2020 05:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99846 * 2 1 4 4 H 1.48504 * 109.47040 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47270 * 300.00353 * 3 2 1 6 6 H 1.48496 * 109.47036 * 60.00319 * 3 2 1 7 7 C 1.37881 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99983 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99446 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46835 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47334 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99597 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00193 * 180.02562 * 11 10 9 14 14 C 1.46504 * 120.00198 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47196 * 180.02562 * 14 13 11 16 16 O 1.42893 * 109.47267 * 64.99900 * 15 14 13 17 17 C 1.35956 * 117.00026 * 179.97438 * 16 15 14 18 18 C 1.38657 * 120.06128 * 359.97438 * 17 16 15 19 19 C 1.38184 * 119.96964 * 180.02562 * 18 17 16 20 20 C 1.38265 * 120.09281 * 359.97438 * 19 18 17 21 21 C 1.38248 * 120.12705 * 0.02562 * 20 19 18 22 22 C 1.38332 * 120.03366 * 359.97438 * 21 20 19 23 23 F 1.35103 * 120.05240 * 180.02562 * 22 21 20 24 24 H 0.97001 * 119.99801 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47304 * 60.00217 * 9 7 2 26 26 H 1.09002 * 109.47540 * 299.99314 * 9 7 2 27 27 H 1.09006 * 109.46921 * 60.00146 * 10 9 7 28 28 H 1.08996 * 109.47457 * 299.99938 * 10 9 7 29 29 H 0.96997 * 120.00527 * 359.97438 * 13 11 10 30 30 H 1.08997 * 109.47296 * 59.99180 * 14 13 11 31 31 H 1.09007 * 109.46911 * 299.99631 * 14 13 11 32 32 H 1.08994 * 109.46599 * 304.99374 * 15 14 13 33 33 H 1.09001 * 109.46881 * 185.00032 * 15 14 13 34 34 H 1.08004 * 120.01774 * 0.03769 * 18 17 16 35 35 H 1.08000 * 119.95526 * 180.27319 * 19 18 17 36 36 H 1.08001 * 119.93128 * 179.97438 * 20 19 18 37 37 H 1.07998 * 119.98480 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4919 -4.9671 -0.0012 12 8 0.2791 -4.9671 -0.0003 13 7 2.1658 -6.1343 -0.0016 14 6 1.4333 -7.4031 -0.0016 15 6 2.4276 -8.5660 -0.0014 16 8 3.1699 -8.5580 1.2196 17 6 4.1026 -9.5338 1.3813 18 6 4.2987 -10.4791 0.3861 19 6 5.2468 -11.4704 0.5527 20 6 6.0010 -11.5208 1.7105 21 6 5.8088 -10.5803 2.7053 22 6 4.8611 -9.5856 2.5440 23 9 4.6733 -8.6660 3.5158 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8727 -3.6046 0.8878 28 1 2.8713 -3.6039 -0.8922 29 1 3.1358 -6.1344 -0.0027 30 1 0.8063 -7.4607 -0.8912 31 1 0.8070 -7.4610 0.8887 32 1 3.1117 -8.4591 -0.8433 33 1 1.8856 -9.5074 -0.0910 34 1 3.7107 -10.4406 -0.5191 35 1 5.4024 -12.2039 -0.2245 36 1 6.7411 -12.2970 1.8381 37 1 6.3995 -10.6216 3.6085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290988473.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:55 Heat of formation + Delta-G solvation = -106.900278 kcal Electronic energy + Delta-G solvation = -20644.413128 eV Core-core repulsion = 17108.242886 eV Total energy + Delta-G solvation = -3536.170242 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.99361 -40.43680 -39.09561 -37.85191 -34.65595 -33.41259 -31.28094 -31.09835 -30.50819 -29.13413 -25.77382 -24.12383 -22.86431 -22.24587 -21.31880 -19.68330 -18.88209 -17.46979 -17.05145 -16.84209 -16.56876 -15.76135 -15.63282 -15.55190 -15.01904 -14.89657 -14.73653 -14.36992 -14.06826 -13.40872 -13.15977 -12.95140 -12.69726 -12.39381 -12.15515 -11.99337 -11.85434 -11.51829 -11.32847 -11.11793 -10.91936 -10.55297 -9.92589 -9.63949 -9.36450 -9.15525 -8.98611 -8.80955 -8.57903 -8.29483 -5.93476 -3.97563 0.71223 0.85369 2.65172 3.17088 3.28046 3.34736 3.41348 3.44788 3.52904 3.88172 4.25212 4.38805 4.50028 4.58009 4.68969 4.74040 4.81492 4.89916 5.04570 5.41522 5.43282 5.52782 5.58067 5.64085 5.76101 5.83887 5.95702 6.24529 6.26855 6.29490 6.67373 6.92381 6.93155 7.77781 7.88540 7.89817 8.10271 8.41889 8.79287 9.11273 9.65845 11.17574 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027840 B = 0.002746 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.496164 B =10193.320266 C =10761.922656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.511 3.489 12 O -0.536 6.536 13 N -0.742 5.742 14 C 0.122 3.878 15 C 0.047 3.953 16 O -0.301 6.301 17 C 0.101 3.899 18 C -0.184 4.184 19 C -0.090 4.090 20 C -0.132 4.132 21 C -0.117 4.117 22 C 0.069 3.931 23 F -0.130 7.130 24 H 0.260 0.740 25 H 0.023 0.977 26 H 0.024 0.976 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.400 0.600 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.138 0.862 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.477 -26.947 0.576 29.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.299 3.701 12 O -0.411 6.411 13 N -0.398 5.398 14 C -0.002 4.002 15 C -0.028 4.028 16 O -0.215 6.215 17 C 0.054 3.946 18 C -0.203 4.203 19 C -0.109 4.109 20 C -0.150 4.150 21 C -0.136 4.136 22 C 0.049 3.951 23 F -0.108 7.108 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.234 0.766 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.156 0.844 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 11.337 -26.619 0.739 28.942 hybrid contribution 0.866 0.865 -0.021 1.224 sum 12.203 -25.754 0.718 28.508 Atomic orbital electron populations 1.70011 1.06054 1.26436 1.50391 1.25034 0.94832 0.99247 0.95353 0.86532 0.80019 0.83833 0.77557 1.19744 1.21043 1.21017 1.21269 0.92980 0.91012 1.51122 0.92546 1.18906 0.93190 0.89396 0.98620 1.21865 1.00725 0.91850 1.02542 1.21573 0.88625 0.85625 0.74237 1.90670 1.14455 1.87652 1.48333 1.46153 1.10184 1.05256 1.78161 1.21293 0.93482 0.81840 1.03582 1.23231 0.94248 0.99991 0.85319 1.86236 1.47947 1.47331 1.39963 1.19065 0.91198 0.90359 0.93992 1.21212 1.02724 0.96873 0.99518 1.21034 0.94640 0.97529 0.97663 1.20941 1.01001 0.99485 0.93614 1.21064 0.97451 0.94029 1.01058 1.17067 0.99918 0.91947 0.86152 1.91541 1.94460 1.64260 1.60559 0.93029 0.95829 0.95795 0.90162 0.90253 0.76639 0.89355 0.90546 0.90916 0.90243 0.84406 0.85043 0.84869 0.84051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.84 13.29 55.43 0.74 -27.10 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.53 -15.19 9.11 -34.44 -0.31 -15.51 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.72 5.64 -27.88 -0.16 -2.88 16 11 C 0.51 10.08 7.83 -10.99 -0.09 10.00 16 12 O -0.54 -12.83 15.98 5.55 0.09 -12.74 16 13 N -0.74 -10.74 5.50 -60.29 -0.33 -11.07 16 14 C 0.12 1.45 6.06 -4.04 -0.02 1.43 16 15 C 0.05 0.40 4.87 37.16 0.18 0.58 16 16 O -0.30 -3.44 9.95 -19.60 -0.20 -3.63 16 17 C 0.10 1.03 6.69 -39.18 -0.26 0.76 16 18 C -0.18 -1.37 9.04 -39.45 -0.36 -1.72 16 19 C -0.09 -0.55 10.04 -39.59 -0.40 -0.95 16 20 C -0.13 -0.81 10.04 -39.57 -0.40 -1.21 16 21 C -0.12 -0.92 10.02 -39.54 -0.40 -1.31 16 22 C 0.07 0.74 7.31 -39.30 -0.29 0.45 16 23 F -0.13 -1.69 17.11 2.25 0.04 -1.65 16 24 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 25 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 27 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 28 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.40 4.86 8.47 -40.82 -0.35 4.51 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 1.03 8.14 -51.92 -0.42 0.60 16 32 H 0.07 0.50 7.66 -51.93 -0.40 0.10 16 33 H 0.08 0.49 7.66 -51.93 -0.40 0.10 16 34 H 0.14 0.73 6.30 -52.48 -0.33 0.40 16 35 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 36 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 37 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 328.15 15.07 4.95 4.95 Total: -1.00 -36.07 328.15 -7.27 -43.33 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -4.81 Total: -1.16 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -2.71 Total: -7.88 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.40 Total: -38.17 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.11 Total: -16.38 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -36.07 -7.27 -43.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290988473.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.567 kcal (2) G-P(sol) polarization free energy of solvation -36.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds