Wall clock time and date at job start Tue Mar 31 2020 05:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99846 * 2 1 4 4 H 1.48504 * 109.47040 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47270 * 300.00353 * 3 2 1 6 6 H 1.48496 * 109.47036 * 60.00319 * 3 2 1 7 7 C 1.37881 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99983 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99446 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46835 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47334 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99597 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00193 * 180.02562 * 11 10 9 14 14 C 1.46504 * 120.00198 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47196 * 180.02562 * 14 13 11 16 16 O 1.42893 * 109.47267 * 64.99900 * 15 14 13 17 17 C 1.35956 * 117.00026 * 179.97438 * 16 15 14 18 18 C 1.38657 * 120.06128 * 359.97438 * 17 16 15 19 19 C 1.38184 * 119.96964 * 180.02562 * 18 17 16 20 20 C 1.38265 * 120.09281 * 359.97438 * 19 18 17 21 21 C 1.38248 * 120.12705 * 0.02562 * 20 19 18 22 22 C 1.38332 * 120.03366 * 359.97438 * 21 20 19 23 23 F 1.35103 * 120.05240 * 180.02562 * 22 21 20 24 24 H 0.97001 * 119.99801 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47304 * 60.00217 * 9 7 2 26 26 H 1.09002 * 109.47540 * 299.99314 * 9 7 2 27 27 H 1.09006 * 109.46921 * 60.00146 * 10 9 7 28 28 H 1.08996 * 109.47457 * 299.99938 * 10 9 7 29 29 H 0.96997 * 120.00527 * 359.97438 * 13 11 10 30 30 H 1.08997 * 109.47296 * 59.99180 * 14 13 11 31 31 H 1.09007 * 109.46911 * 299.99631 * 14 13 11 32 32 H 1.08994 * 109.46599 * 304.99374 * 15 14 13 33 33 H 1.09001 * 109.46881 * 185.00032 * 15 14 13 34 34 H 1.08004 * 120.01774 * 0.03769 * 18 17 16 35 35 H 1.08000 * 119.95526 * 180.27319 * 19 18 17 36 36 H 1.08001 * 119.93128 * 179.97438 * 20 19 18 37 37 H 1.07998 * 119.98480 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4919 -4.9671 -0.0012 12 8 0.2791 -4.9671 -0.0003 13 7 2.1658 -6.1343 -0.0016 14 6 1.4333 -7.4031 -0.0016 15 6 2.4276 -8.5660 -0.0014 16 8 3.1699 -8.5580 1.2196 17 6 4.1026 -9.5338 1.3813 18 6 4.2987 -10.4791 0.3861 19 6 5.2468 -11.4704 0.5527 20 6 6.0010 -11.5208 1.7105 21 6 5.8088 -10.5803 2.7053 22 6 4.8611 -9.5856 2.5440 23 9 4.6733 -8.6660 3.5158 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8727 -3.6046 0.8878 28 1 2.8713 -3.6039 -0.8922 29 1 3.1358 -6.1344 -0.0027 30 1 0.8063 -7.4607 -0.8912 31 1 0.8070 -7.4610 0.8887 32 1 3.1117 -8.4591 -0.8433 33 1 1.8856 -9.5074 -0.0910 34 1 3.7107 -10.4406 -0.5191 35 1 5.4024 -12.2039 -0.2245 36 1 6.7411 -12.2970 1.8381 37 1 6.3995 -10.6216 3.6085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290988473.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:54 Heat of formation + Delta-G solvation = -132.164955 kcal Electronic energy + Delta-G solvation = -20645.508687 eV Core-core repulsion = 17108.242886 eV Total energy + Delta-G solvation = -3537.265801 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.81582 -41.16843 -40.53783 -38.53334 -35.96972 -35.52146 -33.11834 -31.67843 -31.48087 -30.03947 -27.66994 -25.10591 -23.64296 -23.44885 -22.53974 -21.27922 -19.54491 -18.85681 -18.15944 -17.70834 -17.62890 -17.22932 -16.79289 -16.64141 -16.43452 -16.01934 -15.78800 -15.36293 -14.98102 -14.78093 -14.50503 -14.18769 -13.86106 -13.60768 -13.31696 -13.21743 -12.97466 -12.84242 -12.52945 -12.43260 -12.09767 -11.98536 -11.93958 -11.65058 -11.29671 -10.76257 -10.58838 -10.12618 -9.92238 -9.21395 -8.18972 -6.33015 0.15009 0.28873 1.41416 1.43148 1.56530 1.68576 1.98479 2.24119 2.44293 2.63348 3.13905 3.26980 3.59453 3.84472 3.99065 4.02079 4.08232 4.20937 4.32254 4.35039 4.42581 4.49646 4.53926 4.68393 4.76428 5.00622 5.06779 5.12266 5.28398 5.40337 5.45505 5.50088 5.62165 5.72246 5.84533 6.16990 6.29044 6.54755 6.85411 7.30482 7.37246 8.94021 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027840 B = 0.002746 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.496164 B =10193.320266 C =10761.922656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.253 1.253 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.543 4.543 8 H 0.075 0.925 9 C 0.042 3.958 10 C -0.121 4.121 11 C 0.512 3.488 12 O -0.588 6.588 13 N -0.719 5.719 14 C 0.117 3.883 15 C 0.054 3.946 16 O -0.332 6.332 17 C 0.079 3.921 18 C -0.184 4.184 19 C -0.084 4.084 20 C -0.127 4.127 21 C -0.121 4.121 22 C 0.026 3.974 23 F -0.156 7.156 24 H 0.263 0.737 25 H -0.015 1.015 26 H -0.019 1.019 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.414 0.586 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.164 0.836 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.418 -28.742 -0.622 32.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.581 4.581 8 H 0.093 0.907 9 C 0.004 3.996 10 C -0.160 4.160 11 C 0.300 3.700 12 O -0.468 6.468 13 N -0.373 5.373 14 C -0.006 4.006 15 C -0.020 4.020 16 O -0.246 6.246 17 C 0.033 3.967 18 C -0.202 4.202 19 C -0.102 4.102 20 C -0.145 4.145 21 C -0.139 4.139 22 C 0.006 3.994 23 F -0.134 7.134 24 H 0.072 0.928 25 H 0.004 0.996 26 H -0.001 1.001 27 H 0.117 0.883 28 H 0.125 0.875 29 H 0.251 0.749 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.179 0.821 35 H 0.182 0.818 36 H 0.182 0.818 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 14.345 -28.471 -0.461 31.884 hybrid contribution -0.026 1.273 0.343 1.319 sum 14.319 -27.198 -0.117 30.737 Atomic orbital electron populations 1.70184 1.08303 1.27775 1.51521 1.26160 0.95766 1.04003 0.94626 0.85251 0.79246 0.77994 0.77613 1.17684 1.20418 1.20641 1.21743 0.93969 0.91647 1.50715 0.90710 1.18693 0.93698 0.92439 0.94748 1.21638 0.99374 0.90322 1.04698 1.21293 0.87798 0.86769 0.74145 1.90653 1.16521 1.88410 1.51225 1.45896 1.10942 1.04824 1.75616 1.21489 0.94392 0.81602 1.03149 1.23270 0.94113 0.99344 0.85313 1.86169 1.48781 1.48437 1.41248 1.19293 0.91447 0.91153 0.94762 1.21530 1.03087 0.96176 0.99429 1.21501 0.93275 0.97257 0.98188 1.21367 1.01087 0.99194 0.92893 1.21336 0.96781 0.93595 1.02216 1.17620 1.02130 0.93064 0.86541 1.91461 1.94875 1.65433 1.61678 0.92817 0.99628 1.00106 0.88349 0.87536 0.74901 0.88385 0.92536 0.88453 0.87370 0.82113 0.81767 0.81849 0.82845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.53 13.29 21.45 0.28 -60.25 16 2 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 3 Si 0.98 45.18 29.54 68.60 2.03 47.21 16 4 H -0.25 -10.85 7.11 99.48 0.71 -10.15 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 7 C -0.54 -31.70 9.11 25.60 0.23 -31.47 16 8 H 0.07 4.00 7.74 -2.91 -0.02 3.97 16 9 C 0.04 2.40 4.26 29.85 0.13 2.53 16 10 C -0.12 -5.06 5.64 29.85 0.17 -4.89 16 11 C 0.51 20.53 7.83 87.66 0.69 21.21 16 12 O -0.59 -29.51 15.98 -3.04 -0.05 -29.56 16 13 N -0.72 -20.26 5.50 -463.04 -2.55 -22.81 16 14 C 0.12 2.69 6.06 86.38 0.52 3.21 16 15 C 0.05 0.80 4.87 71.98 0.35 1.15 16 16 O -0.33 -7.31 9.95 -93.06 -0.93 -8.23 16 17 C 0.08 1.53 6.69 22.53 0.15 1.68 16 18 C -0.18 -2.16 9.04 22.36 0.20 -1.95 16 19 C -0.08 -0.69 10.04 22.26 0.22 -0.47 16 20 C -0.13 -1.15 10.04 22.28 0.22 -0.92 16 21 C -0.12 -1.73 10.02 22.29 0.22 -1.51 16 22 C 0.03 0.56 7.31 22.45 0.16 0.72 16 23 F -0.16 -4.29 17.11 44.97 0.77 -3.52 16 24 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 25 H -0.01 -0.94 8.10 -2.39 -0.02 -0.96 16 26 H -0.02 -1.27 8.10 -2.39 -0.02 -1.29 16 27 H 0.10 3.76 8.14 -2.38 -0.02 3.74 16 28 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 29 H 0.41 9.36 8.47 -92.71 -0.79 8.57 16 30 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.10 0.98 7.66 -2.39 -0.02 0.96 16 33 H 0.11 1.01 7.66 -2.39 -0.02 0.99 16 34 H 0.16 1.03 6.30 -2.91 -0.02 1.01 16 35 H 0.16 0.28 8.06 -2.91 -0.02 0.25 16 36 H 0.16 0.45 8.06 -2.91 -0.02 0.43 16 37 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -83.71 328.15 3.60 -80.11 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 0.30 Total: 7.77 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 3.74 Total: -10.72 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -2.26 Total: -83.06 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -0.97 Total: -37.79 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.77 Total: -3.52 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -83.71 3.60 -80.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290988473.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.051 kcal (2) G-P(sol) polarization free energy of solvation -83.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds