Wall clock time and date at job start Tue Mar 31 2020 05:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00168 * 2 1 4 4 H 1.48500 * 109.46951 * 269.99823 * 3 2 1 5 5 H 1.48500 * 109.47205 * 30.00072 * 3 2 1 6 6 H 1.48500 * 109.47019 * 149.99715 * 3 2 1 7 7 C 1.37881 * 119.99322 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00242 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99342 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46687 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46655 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00414 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99912 * 179.97438 * 11 10 9 14 14 N 1.40093 * 120.00375 * 180.02562 * 13 11 10 15 15 C 1.34781 * 120.00375 * 180.02562 * 14 13 11 16 16 O 1.21584 * 119.99970 * 179.97438 * 15 14 13 17 17 N 1.34771 * 119.99489 * 0.02562 * 15 14 13 18 18 C 1.46505 * 119.99622 * 180.02562 * 17 15 14 19 19 C 1.50703 * 109.47064 * 179.97438 * 18 17 15 20 20 C 1.34515 * 125.79060 * 89.99944 * 19 18 17 21 21 C 1.41380 * 106.83832 * 179.97438 * 20 19 18 22 22 C 1.34506 * 106.84493 * 359.97438 * 21 20 19 23 23 O 1.34306 * 125.78568 * 269.69282 * 19 18 17 24 24 H 0.97001 * 120.00320 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47027 * 60.00348 * 9 7 2 26 26 H 1.08999 * 109.46980 * 299.99717 * 9 7 2 27 27 H 1.08995 * 109.47081 * 60.00407 * 10 9 7 28 28 H 1.08999 * 109.47201 * 299.99608 * 10 9 7 29 29 H 0.97002 * 119.99874 * 359.97438 * 13 11 10 30 30 H 0.97002 * 119.99751 * 359.97438 * 14 13 11 31 31 H 0.96996 * 120.00772 * 359.97438 * 17 15 14 32 32 H 1.09002 * 109.47068 * 299.99729 * 18 17 15 33 33 H 1.09001 * 109.47372 * 59.99816 * 18 17 15 34 34 H 1.07996 * 126.58016 * 0.03378 * 20 19 18 35 35 H 1.08006 * 126.57610 * 179.97438 * 21 20 19 36 36 H 1.08005 * 125.79499 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 1.4643 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0213 -2.6367 0.0023 11 6 5.5283 -2.6367 0.0022 12 8 6.1348 -1.5864 0.0018 13 7 6.2022 -3.8040 0.0037 14 7 7.6032 -3.8041 0.0042 15 6 8.2770 -4.9713 0.0051 16 8 9.4929 -4.9713 0.0051 17 7 7.6031 -6.1384 0.0051 18 6 8.3355 -7.4072 0.0066 19 6 7.3562 -8.5526 0.0068 20 6 6.8457 -9.1514 -1.0842 21 6 5.9769 -10.1677 -0.6248 22 6 6.0087 -10.1296 0.7193 23 8 6.8494 -9.1524 1.0965 24 1 -0.4851 0.8400 0.0004 25 1 3.8744 -0.6802 0.8911 26 1 3.8751 -0.6806 -0.8889 27 1 3.6584 -3.1511 -0.8875 28 1 3.6577 -3.1499 0.8925 29 1 5.7172 -4.6440 0.0051 30 1 8.0882 -2.9640 0.0031 31 1 6.6331 -6.1384 0.0047 32 1 8.9632 -7.4655 -0.8826 33 1 8.9612 -7.4645 0.8973 34 1 7.0594 -8.9040 -2.1135 35 1 5.3985 -10.8448 -1.2360 36 1 5.4552 -10.7775 1.3830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291968029.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:15 Heat of formation + Delta-G solvation = -14.402431 kcal Electronic energy + Delta-G solvation = -20795.515211 eV Core-core repulsion = 17283.275938 eV Total energy + Delta-G solvation = -3512.239273 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.00652 -40.59627 -39.17214 -35.75969 -35.43625 -33.63678 -33.37071 -31.82368 -30.95105 -30.20904 -26.40684 -26.00111 -22.18392 -22.02859 -21.58818 -21.02836 -20.27228 -19.25064 -17.97999 -17.57136 -16.83101 -16.53266 -16.09224 -15.74493 -15.42564 -15.23142 -14.98464 -14.40559 -14.15541 -13.78853 -13.56728 -13.25431 -13.06804 -12.93640 -12.64702 -12.42604 -11.55537 -11.34317 -11.03958 -10.87257 -10.35811 -10.32529 -10.18115 -9.89535 -9.63316 -9.59457 -9.28453 -9.02950 -8.58149 -8.36356 -6.09958 -4.09895 1.12515 1.83630 2.14339 2.48046 2.62002 2.90691 2.97975 3.33432 3.40716 3.50153 4.12088 4.44608 4.57635 4.61085 4.62363 4.93597 5.02835 5.14884 5.25413 5.37580 5.50279 5.62783 5.83677 5.87188 5.88885 6.04134 6.30188 6.37689 6.55241 6.68394 7.23138 7.28981 7.30186 7.51459 7.69301 8.10099 8.39829 8.47117 8.91911 9.52334 11.02585 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020430 B = 0.003174 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.221170 B = 8818.434900 C = 9990.192522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.528 4.528 8 H 0.074 0.926 9 C 0.002 3.998 10 C -0.111 4.111 11 C 0.514 3.486 12 O -0.530 6.530 13 N -0.543 5.543 14 N -0.530 5.530 15 C 0.716 3.284 16 O -0.579 6.579 17 N -0.744 5.744 18 C 0.223 3.777 19 C -0.043 4.043 20 C -0.179 4.179 21 C -0.219 4.219 22 C -0.026 4.026 23 O -0.171 6.171 24 H 0.264 0.736 25 H 0.026 0.974 26 H 0.022 0.978 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.417 0.583 30 H 0.444 0.556 31 H 0.397 0.603 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.029 -21.539 -0.427 25.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.566 4.566 8 H 0.092 0.908 9 C -0.036 4.036 10 C -0.153 4.153 11 C 0.302 3.698 12 O -0.403 6.403 13 N -0.298 5.298 14 N -0.285 5.285 15 C 0.415 3.585 16 O -0.454 6.454 17 N -0.404 5.404 18 C 0.099 3.901 19 C -0.093 4.093 20 C -0.199 4.199 21 C -0.238 4.238 22 C -0.094 4.094 23 O -0.066 6.066 24 H 0.074 0.926 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.257 0.743 30 H 0.290 0.710 31 H 0.232 0.768 32 H 0.120 0.880 33 H 0.105 0.895 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 14.269 -20.703 -0.125 25.144 hybrid contribution -0.422 0.532 -0.229 0.717 sum 13.847 -20.170 -0.353 24.469 Atomic orbital electron populations 1.69900 1.06307 1.27108 1.50635 1.24961 0.94715 0.99257 0.94198 0.86800 0.80601 0.83377 0.78795 1.20189 1.21387 1.18524 1.21048 0.88989 0.94674 1.51886 0.90785 1.19410 0.96653 0.89578 0.98005 1.21706 0.85397 1.04104 1.04080 1.22044 0.91521 0.81614 0.74601 1.90705 1.70201 1.30799 1.48553 1.45494 0.94132 1.10677 1.79472 1.44468 0.95223 1.08831 1.79964 1.15574 0.84913 0.79686 0.78329 1.91028 1.10419 1.84844 1.59077 1.45150 1.09885 1.04358 1.80962 1.19415 0.89793 0.76152 1.04719 1.22245 1.02702 0.99779 0.84594 1.21764 1.00199 0.98306 0.99662 1.21921 1.04218 1.02735 0.94900 1.24194 0.95791 0.93155 0.96297 1.84062 1.47963 1.39764 1.34825 0.92603 0.95566 0.96004 0.88856 0.88825 0.74260 0.71013 0.76779 0.88038 0.89467 0.83011 0.83072 0.77757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 7 C -0.53 -14.36 9.66 -34.44 -0.33 -14.69 16 8 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 9 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 10 C -0.11 -1.89 5.64 -27.88 -0.16 -2.05 16 11 C 0.51 8.29 7.95 -10.98 -0.09 8.20 16 12 O -0.53 -10.71 15.82 5.56 0.09 -10.62 16 13 N -0.54 -6.47 6.26 31.22 0.20 -6.27 16 14 N -0.53 -6.70 6.26 27.63 0.17 -6.53 16 15 C 0.72 8.82 8.68 -86.92 -0.75 8.07 16 16 O -0.58 -8.97 17.18 5.29 0.09 -8.88 16 17 N -0.74 -6.71 5.51 -66.41 -0.37 -7.07 16 18 C 0.22 1.78 6.20 -5.19 -0.03 1.75 16 19 C -0.04 -0.34 6.69 -35.62 -0.24 -0.58 16 20 C -0.18 -1.30 10.81 -39.70 -0.43 -1.73 16 21 C -0.22 -1.44 10.91 -39.71 -0.43 -1.88 16 22 C -0.03 -0.17 12.09 29.41 0.36 0.19 16 23 O -0.17 -1.45 10.65 5.68 0.06 -1.39 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.03 0.64 7.16 -51.93 -0.37 0.27 16 26 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 27 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 28 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.42 3.51 6.70 -182.60 -1.22 2.28 16 30 H 0.44 6.08 8.10 -182.60 -1.48 4.60 16 31 H 0.40 2.91 6.38 -40.82 -0.26 2.65 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.15 0.72 8.06 -52.48 -0.42 0.30 16 36 H 0.21 0.59 8.06 -52.48 -0.42 0.16 16 LS Contribution 320.19 15.07 4.83 4.83 Total: -1.00 -35.43 320.19 -7.40 -42.82 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.27 Total: 3.11 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -2.30 Total: -0.85 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.78 Total: -46.23 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: 0.24 Total: -20.89 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.43 -7.40 -42.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291968029.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.422 kcal (2) G-P(sol) polarization free energy of solvation -35.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds