Wall clock time and date at job start Tue Mar 31 2020 05:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36024 * 116.99859 * 2 1 4 4 C 1.38656 * 119.99366 * 359.97438 * 3 2 1 5 5 C 1.38130 * 120.03867 * 180.02562 * 4 3 2 6 6 C 1.50691 * 119.98579 * 180.02562 * 5 4 3 7 7 C 1.38850 * 120.02407 * 359.97438 * 5 4 3 8 8 N 1.40098 * 120.00390 * 180.02562 * 7 5 4 9 9 C 1.34779 * 119.99629 * 204.82868 * 8 7 5 10 10 O 1.21296 * 120.00373 * 5.52692 * 9 8 7 11 11 C 1.50701 * 120.00088 * 185.52115 * 9 8 7 12 12 C 1.53001 * 109.47410 * 179.97438 * 11 9 8 13 13 C 1.50694 * 109.47026 * 179.97438 * 12 11 9 14 14 H 1.08000 * 120.00496 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99677 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00310 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99989 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46896 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47306 * 119.99448 * 17 15 13 20 20 H 1.48502 * 109.47082 * 240.00312 * 17 15 13 21 21 C 1.38834 * 119.98477 * 0.02562 * 7 5 4 22 22 C 1.38274 * 119.95982 * 359.71941 * 21 7 5 23 23 F 1.35100 * 120.00931 * 180.27901 * 22 21 7 24 24 H 1.08997 * 109.47092 * 59.99938 * 1 2 3 25 25 H 1.09003 * 109.47189 * 300.00462 * 1 2 3 26 26 H 1.08994 * 109.47133 * 180.02562 * 1 2 3 27 27 H 1.08000 * 119.98149 * 359.97438 * 4 3 2 28 28 H 1.09001 * 109.47697 * 89.99968 * 6 5 4 29 29 H 1.08999 * 109.47155 * 209.99615 * 6 5 4 30 30 H 1.09002 * 109.47650 * 329.99793 * 6 5 4 31 31 H 0.96994 * 120.00321 * 24.82756 * 8 7 5 32 32 H 1.09004 * 109.47018 * 299.99937 * 11 9 8 33 33 H 1.08994 * 109.47251 * 60.00031 * 11 9 8 34 34 H 1.08994 * 109.47252 * 300.00508 * 12 11 9 35 35 H 1.09007 * 109.46645 * 60.00093 * 12 11 9 36 36 H 0.96994 * 120.00585 * 179.97438 * 16 15 13 37 37 H 1.07996 * 120.01988 * 179.97438 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2120 0.0000 4 6 1.2912 2.3748 -0.0005 5 6 1.9173 3.6060 -0.0011 6 6 1.0953 4.8689 -0.0011 7 6 3.3038 3.6804 -0.0005 8 7 3.9384 4.9294 -0.0005 9 6 5.1883 5.0502 -0.4902 10 8 5.7258 4.1016 -1.0217 11 6 5.9180 6.3639 -0.3775 12 6 7.3066 6.2316 -1.0063 13 6 8.0360 7.5455 -0.8941 14 1 7.5573 8.3903 -0.4213 15 6 9.3146 7.6691 -1.3952 16 7 9.8974 6.6406 -1.9713 17 14 10.2191 9.2976 -1.2556 18 1 9.3508 10.2890 -0.5712 19 1 11.4655 9.1059 -0.4714 20 1 10.5597 9.7926 -2.6136 21 6 4.0611 2.5168 0.0000 22 6 3.4337 1.2846 0.0059 23 9 4.1696 0.1516 0.0121 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.2127 2.3177 -0.0014 28 1 0.8974 5.1738 1.0266 29 1 1.6428 5.6589 -0.5152 30 1 0.1509 4.6879 -0.5145 31 1 3.4783 5.7072 0.3518 32 1 5.3550 7.1381 -0.8988 33 1 6.0198 6.6341 0.6735 34 1 7.8693 5.4575 -0.4847 35 1 7.2052 5.9613 -2.0574 36 1 10.7967 6.7276 -2.3242 37 1 5.1395 2.5739 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291987325.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:46 Heat of formation + Delta-G solvation = -101.896509 kcal Electronic energy + Delta-G solvation = -21294.976917 eV Core-core repulsion = 17759.023655 eV Total energy + Delta-G solvation = -3535.953262 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.68756 -40.68348 -39.47484 -37.58414 -34.24085 -33.57228 -32.50419 -31.19798 -29.33373 -28.06503 -26.59810 -25.51093 -23.18909 -21.98513 -21.20557 -19.89137 -18.27998 -17.65410 -17.41890 -16.56828 -16.24294 -15.65615 -15.44467 -15.23020 -15.02706 -14.53365 -14.45621 -14.22376 -13.89867 -13.59881 -13.51213 -12.65558 -12.51625 -12.27256 -12.20457 -12.15435 -11.91917 -11.49764 -11.30965 -11.19188 -10.97769 -10.62289 -10.05601 -9.91877 -9.73892 -9.29578 -9.11744 -8.75976 -8.37131 -7.69295 -6.00355 -4.05294 1.01499 1.15293 2.89742 3.00111 3.21827 3.30299 3.37858 3.40623 3.55959 4.20781 4.43929 4.46627 4.70459 4.78224 4.87703 4.88556 5.16487 5.20618 5.33880 5.34916 5.39432 5.41285 5.64120 5.71977 5.88733 5.97159 6.07605 6.08715 6.19026 6.40124 6.76702 6.78866 7.17466 7.57124 7.68953 7.77755 8.00660 8.30168 8.49000 9.02728 9.58769 11.10538 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034624 B = 0.003258 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.487404 B = 8593.118058 C = 9300.186004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.069 3.931 4 C -0.161 4.161 5 C -0.098 4.098 6 C -0.113 4.113 7 C 0.157 3.843 8 N -0.678 5.678 9 C 0.508 3.492 10 O -0.509 6.509 11 C -0.128 4.128 12 C 0.035 3.965 13 C -0.528 4.528 14 H 0.057 0.943 15 C 0.058 3.942 16 N -0.888 5.888 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.130 4.130 22 C 0.090 3.910 23 F -0.130 7.130 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.099 0.901 27 H 0.138 0.862 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.411 0.589 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.261 0.739 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.545 -6.969 6.150 24.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.022 3.978 4 C -0.180 4.180 5 C -0.101 4.101 6 C -0.170 4.170 7 C 0.061 3.939 8 N -0.324 5.324 9 C 0.298 3.702 10 O -0.382 6.382 11 C -0.168 4.168 12 C -0.002 4.002 13 C -0.567 4.567 14 H 0.075 0.925 15 C -0.144 4.144 16 N -0.527 5.527 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.151 4.151 22 C 0.069 3.931 23 F -0.109 7.109 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.118 0.882 27 H 0.156 0.844 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.247 0.753 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -21.791 -7.874 5.673 23.854 hybrid contribution 0.172 1.113 0.170 1.139 sum -21.619 -6.760 5.843 23.392 Atomic orbital electron populations 1.23058 0.78419 1.03967 1.01280 1.86145 1.21291 1.25836 1.89300 1.18877 0.90652 0.85464 1.02768 1.20694 0.99769 0.90322 1.07210 1.19423 0.91690 0.95550 1.03441 1.20728 0.99390 0.94309 1.02571 1.17292 0.90338 0.85779 1.00536 1.43972 1.17107 1.08666 1.62661 1.21933 0.79858 0.92556 0.75880 1.90655 1.66066 1.40860 1.40611 1.21927 1.00244 0.91262 1.03388 1.18935 0.87304 0.97309 0.96659 1.21217 0.99770 0.96999 1.38689 0.92481 1.25029 0.97594 0.96543 0.95207 1.69997 1.14257 1.29843 1.38567 0.86526 0.79778 0.83838 0.77758 1.19742 1.20983 1.20997 1.21324 1.03095 0.88736 1.01969 1.16751 0.85628 0.82828 1.07873 1.91499 1.76666 1.48580 1.94139 0.92621 0.92652 0.88214 0.84384 0.90777 0.91158 0.91016 0.75272 0.89764 0.89614 0.95650 0.95656 0.92917 0.81447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.83 10.36 -19.82 -0.21 -4.03 16 3 C 0.07 0.91 6.69 -39.18 -0.26 0.65 16 4 C -0.16 -1.71 8.68 -39.47 -0.34 -2.05 16 5 C -0.10 -1.08 5.90 -104.44 -0.62 -1.70 16 6 C -0.11 -0.85 9.44 36.00 0.34 -0.51 16 7 C 0.16 2.21 6.41 -83.63 -0.54 1.67 16 8 N -0.68 -9.24 4.98 -9.83 -0.05 -9.29 16 9 C 0.51 9.22 7.64 -10.98 -0.08 9.13 16 10 O -0.51 -11.34 13.15 5.54 0.07 -11.27 16 11 C -0.13 -2.43 5.64 -27.88 -0.16 -2.59 16 12 C 0.04 0.92 4.26 -27.89 -0.12 0.80 16 13 C -0.53 -14.60 9.11 -34.44 -0.31 -14.92 16 14 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -27.04 13.29 55.43 0.74 -26.31 16 17 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C -0.13 -2.12 8.69 -39.35 -0.34 -2.47 16 22 C 0.09 1.40 7.31 -39.32 -0.29 1.12 16 23 F -0.13 -2.20 17.11 2.25 0.04 -2.16 16 24 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 25 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.14 1.02 6.29 -52.49 -0.33 0.69 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.52 6.98 -51.93 -0.36 0.16 16 30 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 31 H 0.41 4.06 7.40 -40.82 -0.30 3.76 16 32 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.17 3.13 5.78 -52.49 -0.30 2.82 16 LS Contribution 319.45 15.07 4.81 4.81 Total: -1.00 -34.33 319.45 -6.03 -40.36 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -4.59 Total: -0.33 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -1.83 Total: -8.10 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.69 Total: -35.59 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.13 Total: -15.30 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.33 -6.03 -40.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291987325.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.541 kcal (2) G-P(sol) polarization free energy of solvation -34.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds