Wall clock time and date at job start Tue Mar 31 2020 05:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36024 * 116.99859 * 2 1 4 4 C 1.38656 * 119.99366 * 359.97438 * 3 2 1 5 5 C 1.38130 * 120.03867 * 180.02562 * 4 3 2 6 6 C 1.50691 * 119.98579 * 180.02562 * 5 4 3 7 7 C 1.38850 * 120.02407 * 359.97438 * 5 4 3 8 8 N 1.40098 * 120.00390 * 180.02562 * 7 5 4 9 9 C 1.34779 * 119.99629 * 204.82868 * 8 7 5 10 10 O 1.21296 * 120.00373 * 5.52692 * 9 8 7 11 11 C 1.50701 * 120.00088 * 185.52115 * 9 8 7 12 12 C 1.53001 * 109.47410 * 179.97438 * 11 9 8 13 13 C 1.50694 * 109.47026 * 179.97438 * 12 11 9 14 14 H 1.08000 * 120.00496 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99677 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00310 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99989 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46896 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47306 * 119.99448 * 17 15 13 20 20 H 1.48502 * 109.47082 * 240.00312 * 17 15 13 21 21 C 1.38834 * 119.98477 * 0.02562 * 7 5 4 22 22 C 1.38274 * 119.95982 * 359.71941 * 21 7 5 23 23 F 1.35100 * 120.00931 * 180.27901 * 22 21 7 24 24 H 1.08997 * 109.47092 * 59.99938 * 1 2 3 25 25 H 1.09003 * 109.47189 * 300.00462 * 1 2 3 26 26 H 1.08994 * 109.47133 * 180.02562 * 1 2 3 27 27 H 1.08000 * 119.98149 * 359.97438 * 4 3 2 28 28 H 1.09001 * 109.47697 * 89.99968 * 6 5 4 29 29 H 1.08999 * 109.47155 * 209.99615 * 6 5 4 30 30 H 1.09002 * 109.47650 * 329.99793 * 6 5 4 31 31 H 0.96994 * 120.00321 * 24.82756 * 8 7 5 32 32 H 1.09004 * 109.47018 * 299.99937 * 11 9 8 33 33 H 1.08994 * 109.47251 * 60.00031 * 11 9 8 34 34 H 1.08994 * 109.47252 * 300.00508 * 12 11 9 35 35 H 1.09007 * 109.46645 * 60.00093 * 12 11 9 36 36 H 0.96994 * 120.00585 * 179.97438 * 16 15 13 37 37 H 1.07996 * 120.01988 * 179.97438 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2120 0.0000 4 6 1.2912 2.3748 -0.0005 5 6 1.9173 3.6060 -0.0011 6 6 1.0953 4.8689 -0.0011 7 6 3.3038 3.6804 -0.0005 8 7 3.9384 4.9294 -0.0005 9 6 5.1883 5.0502 -0.4902 10 8 5.7258 4.1016 -1.0217 11 6 5.9180 6.3639 -0.3775 12 6 7.3066 6.2316 -1.0063 13 6 8.0360 7.5455 -0.8941 14 1 7.5573 8.3903 -0.4213 15 6 9.3146 7.6691 -1.3952 16 7 9.8974 6.6406 -1.9713 17 14 10.2191 9.2976 -1.2556 18 1 9.3508 10.2890 -0.5712 19 1 11.4655 9.1059 -0.4714 20 1 10.5597 9.7926 -2.6136 21 6 4.0611 2.5168 0.0000 22 6 3.4337 1.2846 0.0059 23 9 4.1696 0.1516 0.0121 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.2127 2.3177 -0.0014 28 1 0.8974 5.1738 1.0266 29 1 1.6428 5.6589 -0.5152 30 1 0.1509 4.6879 -0.5145 31 1 3.4783 5.7072 0.3518 32 1 5.3550 7.1381 -0.8988 33 1 6.0198 6.6341 0.6735 34 1 7.8693 5.4575 -0.4847 35 1 7.2052 5.9613 -2.0574 36 1 10.7967 6.7276 -2.3242 37 1 5.1395 2.5739 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291987325.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:46 Heat of formation + Delta-G solvation = -125.516358 kcal Electronic energy + Delta-G solvation = -21296.001151 eV Core-core repulsion = 17759.023655 eV Total energy + Delta-G solvation = -3536.977496 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.90684 -41.83711 -40.58776 -38.68605 -35.61203 -35.47009 -33.43037 -33.06864 -30.47339 -28.71985 -27.97311 -26.88595 -24.53287 -23.36050 -22.42610 -21.32530 -19.39602 -18.94707 -18.59767 -18.15254 -17.31113 -17.06739 -16.68877 -16.55502 -16.40150 -16.06918 -15.54347 -15.22199 -15.07897 -14.82038 -14.41946 -14.21859 -14.11575 -13.39622 -13.28309 -13.05588 -12.94761 -12.85048 -12.71294 -12.44927 -12.35024 -12.15678 -11.93328 -11.64549 -11.28149 -11.03522 -10.72024 -10.57421 -9.82997 -8.74692 -8.18063 -6.31958 -0.01103 0.08318 1.43112 1.44263 1.55190 1.57427 1.96549 2.23059 2.43729 2.49541 3.15661 3.17186 3.59500 3.75910 3.86789 4.04776 4.33314 4.38693 4.43580 4.46485 4.53090 4.55584 4.69694 4.75535 4.84790 4.87523 4.91221 5.05327 5.17911 5.29881 5.33459 5.50680 5.61982 5.69704 5.85311 6.16601 6.29612 6.42340 6.86928 7.15413 7.38598 8.94805 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034624 B = 0.003258 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.487404 B = 8593.118058 C = 9300.186004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.336 6.336 3 C 0.077 3.923 4 C -0.150 4.150 5 C -0.074 4.074 6 C -0.115 4.115 7 C 0.132 3.868 8 N -0.652 5.652 9 C 0.509 3.491 10 O -0.563 6.563 11 C -0.115 4.115 12 C 0.039 3.961 13 C -0.540 4.540 14 H 0.080 0.920 15 C -0.009 4.009 16 N -0.939 5.939 17 Si 0.974 3.026 18 H -0.250 1.250 19 H -0.283 1.283 20 H -0.282 1.282 21 C -0.152 4.152 22 C 0.049 3.951 23 F -0.150 7.150 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.117 0.883 27 H 0.183 0.817 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.432 0.568 32 H 0.115 0.885 33 H 0.113 0.887 34 H -0.018 1.018 35 H -0.017 1.017 36 H 0.262 0.738 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.495 -4.477 7.293 27.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.250 6.250 3 C 0.030 3.970 4 C -0.168 4.168 5 C -0.077 4.077 6 C -0.172 4.172 7 C 0.037 3.963 8 N -0.299 5.299 9 C 0.300 3.700 10 O -0.440 6.440 11 C -0.155 4.155 12 C 0.001 3.999 13 C -0.578 4.578 14 H 0.098 0.902 15 C -0.206 4.206 16 N -0.579 5.579 17 Si 0.798 3.202 18 H -0.173 1.173 19 H -0.209 1.209 20 H -0.208 1.208 21 C -0.173 4.173 22 C 0.029 3.971 23 F -0.129 7.129 24 H 0.091 0.909 25 H 0.094 0.906 26 H 0.136 0.864 27 H 0.200 0.800 28 H 0.118 0.882 29 H 0.091 0.909 30 H 0.115 0.885 31 H 0.273 0.727 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.000 1.000 35 H 0.002 0.998 36 H 0.071 0.929 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -25.823 -5.357 6.854 27.249 hybrid contribution 1.240 0.221 -0.173 1.271 sum -24.583 -5.136 6.681 25.987 Atomic orbital electron populations 1.23476 0.75454 1.05953 1.03032 1.86132 1.24359 1.25574 1.88935 1.18979 0.89705 0.86966 1.01312 1.21176 1.01658 0.88845 1.05161 1.19883 0.90296 0.97657 0.99821 1.20912 0.99651 0.91998 1.04602 1.17431 0.91687 0.84723 1.02480 1.43497 1.15501 1.09576 1.61358 1.21731 0.81110 0.91522 0.75687 1.90665 1.67702 1.42325 1.43355 1.21676 0.96566 0.92617 1.04602 1.18724 0.91226 0.95684 0.94225 1.21740 1.00103 0.97893 1.38015 0.90223 1.26150 0.98953 1.00753 0.94754 1.70183 1.14778 1.32817 1.40123 0.85274 0.78270 0.78872 0.77831 1.17322 1.20875 1.20781 1.21112 1.01719 0.90512 1.03984 1.17033 0.87150 0.82081 1.10839 1.91429 1.77413 1.49423 1.94615 0.90947 0.90569 0.86437 0.79959 0.88206 0.90896 0.88521 0.72706 0.86684 0.86940 0.99954 0.99815 0.92930 0.85210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.27 16 2 O -0.34 -7.77 10.36 -93.82 -0.97 -8.74 16 3 C 0.08 1.96 6.69 22.53 0.15 2.12 16 4 C -0.15 -2.64 8.68 22.34 0.19 -2.45 16 5 C -0.07 -1.39 5.90 -19.75 -0.12 -1.51 16 6 C -0.12 -1.11 9.44 71.23 0.67 -0.44 16 7 C 0.13 3.66 6.41 38.11 0.24 3.90 16 8 N -0.65 -17.10 4.98 -303.40 -1.51 -18.61 16 9 C 0.51 18.99 7.64 87.66 0.67 19.66 16 10 O -0.56 -27.22 13.15 -3.08 -0.04 -27.26 16 11 C -0.12 -4.32 5.64 29.85 0.17 -4.15 16 12 C 0.04 2.12 4.26 29.85 0.13 2.25 16 13 C -0.54 -30.02 9.11 25.60 0.23 -29.79 16 14 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 15 C -0.01 -0.51 5.46 84.66 0.46 -0.05 16 16 N -0.94 -59.56 13.29 21.45 0.28 -59.27 16 17 Si 0.97 43.88 29.54 68.60 2.03 45.90 16 18 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 21 C -0.15 -5.33 8.69 22.42 0.19 -5.13 16 22 C 0.05 1.64 7.31 22.44 0.16 1.80 16 23 F -0.15 -5.56 17.11 44.97 0.77 -4.79 16 24 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 25 H 0.08 0.51 7.66 -2.39 -0.02 0.49 16 26 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.18 1.58 6.29 -2.91 -0.02 1.56 16 28 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.73 6.98 -2.39 -0.02 0.71 16 30 H 0.10 0.55 8.09 -2.39 -0.02 0.53 16 31 H 0.43 7.22 7.40 -92.71 -0.69 6.53 16 32 H 0.12 3.61 8.14 -2.38 -0.02 3.59 16 33 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 34 H -0.02 -1.12 8.10 -2.39 -0.02 -1.14 16 35 H -0.02 -1.03 8.10 -2.38 -0.02 -1.05 16 36 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.13 5.50 5.78 -2.91 -0.02 5.49 16 Total: -1.00 -82.82 319.45 5.25 -77.57 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 0.42 Total: 7.70 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: 4.28 Total: -12.51 kcal Atomic # 7 Polarization: -76.66 SS G_CDS: -1.23 Total: -77.88 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -1.01 Total: -36.00 kcal Atomic # 9 Polarization: -5.56 SS G_CDS: 0.77 Total: -4.79 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -82.82 5.25 -77.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291987325.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.945 kcal (2) G-P(sol) polarization free energy of solvation -82.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds