Wall clock time and date at job start Tue Mar 31 2020 05:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33386 * 125.20107 * 2 1 4 4 C 1.38424 * 114.92099 * 180.02562 * 3 2 1 5 5 C 1.33384 * 114.92035 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.20349 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46912 * 90.00228 * 6 5 4 8 8 H 1.09002 * 109.47069 * 304.99691 * 7 6 5 9 9 C 1.53006 * 109.46846 * 185.00257 * 7 6 5 10 10 N 1.46498 * 109.47465 * 65.00234 * 7 6 5 11 11 C 1.34775 * 119.99962 * 204.99918 * 10 7 6 12 12 O 1.21279 * 120.00095 * 0.02562 * 11 10 7 13 13 C 1.50697 * 120.00075 * 179.97438 * 11 10 7 14 14 C 1.53000 * 109.47410 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.47091 * 180.02562 * 14 13 11 16 16 H 1.07998 * 120.00103 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99630 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00333 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99843 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47155 * 90.00435 * 19 17 15 21 21 H 1.48503 * 109.47412 * 210.00326 * 19 17 15 22 22 H 1.48498 * 109.47275 * 330.00049 * 19 17 15 23 23 S 1.75881 * 109.59619 * 0.24566 * 5 4 3 24 24 H 1.08999 * 109.47643 * 90.00043 * 1 2 3 25 25 H 1.09001 * 109.46764 * 209.99808 * 1 2 3 26 26 H 1.08997 * 109.46991 * 329.99797 * 1 2 3 27 27 H 1.08001 * 122.54079 * 0.05886 * 3 2 1 28 28 H 1.08005 * 122.53856 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47152 * 330.00000 * 6 5 4 30 30 H 1.09001 * 109.46980 * 210.00100 * 6 5 4 31 31 H 1.09001 * 109.47241 * 59.99481 * 9 7 6 32 32 H 1.08996 * 109.46751 * 179.97438 * 9 7 6 33 33 H 1.09002 * 109.46824 * 299.99583 * 9 7 6 34 34 H 0.96998 * 119.99659 * 24.99845 * 10 7 6 35 35 H 1.09001 * 109.47614 * 300.00351 * 13 11 10 36 36 H 1.09001 * 109.46875 * 59.99997 * 13 11 10 37 37 H 1.08997 * 109.47143 * 300.00196 * 14 13 11 38 38 H 1.09001 * 109.47248 * 60.00049 * 14 13 11 39 39 H 0.97004 * 120.00339 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 -0.0006 5 6 3.9751 -0.4476 -0.0005 6 6 5.3861 -0.9769 -0.0016 7 6 5.8648 -1.1557 1.4406 8 1 5.7540 -0.2147 1.9795 9 6 7.3367 -1.5735 1.4412 10 7 5.0629 -2.1914 2.0966 11 6 4.9285 -2.1912 3.4376 12 8 5.4711 -1.3333 4.1013 13 6 4.1032 -3.2563 4.1124 14 6 4.1134 -3.0276 5.6251 15 6 3.2885 -4.0931 6.2999 16 1 2.8050 -4.8568 5.7088 17 6 3.1512 -4.0929 7.6718 18 7 3.7396 -3.1627 8.3915 19 14 2.1281 -5.4132 8.5082 20 1 2.9941 -6.5719 8.8438 21 1 1.5323 -4.8637 9.7525 22 1 1.0446 -5.8536 7.5932 23 16 2.5211 -1.4371 -0.0068 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.8669 2.0895 0.0009 28 1 4.3721 1.6351 -0.0002 29 1 6.0384 -0.2714 -0.5162 30 1 5.4132 -1.9380 -0.5152 31 1 7.9334 -0.8029 0.9531 32 1 7.6778 -1.7004 2.4686 33 1 7.4475 -2.5145 0.9024 34 1 4.6286 -2.8773 1.5657 35 1 3.0780 -3.2088 3.7450 36 1 4.5237 -4.2371 3.8900 37 1 5.1384 -3.0749 5.9928 38 1 3.6927 -2.0469 5.8472 39 1 3.6427 -3.1623 9.3567 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292052815.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:47 Heat of formation + Delta-G solvation = -34.178399 kcal Electronic energy + Delta-G solvation = -19362.307785 eV Core-core repulsion = 16395.504177 eV Total energy + Delta-G solvation = -2966.803609 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.39230 -38.12396 -35.94504 -33.39702 -32.62035 -31.36378 -30.32518 -28.54782 -25.70267 -24.83429 -22.95195 -22.17822 -20.76533 -19.65842 -18.82519 -17.14217 -16.69649 -15.91931 -15.62769 -15.36843 -14.74263 -14.40801 -14.11943 -13.78538 -13.41402 -13.31870 -13.19259 -12.97217 -12.55461 -12.23146 -12.16593 -11.98130 -11.92002 -11.57529 -11.41917 -11.10773 -10.97589 -10.89246 -10.75574 -10.56687 -9.90435 -9.61211 -9.12128 -8.94360 -8.79537 -8.49456 -8.42089 -8.28377 -5.92680 -3.96780 0.92236 1.54254 1.93168 2.67517 3.34519 3.35514 3.41115 3.43813 3.60955 4.50262 4.57041 4.75946 4.80988 4.95833 5.13043 5.31522 5.35024 5.41614 5.42206 5.47503 5.53960 5.59581 5.64114 5.73915 5.77986 6.04440 6.15198 6.19331 6.26773 6.30373 6.32151 6.46622 6.84417 6.95537 7.78385 7.91454 7.96454 8.11501 8.43202 8.87227 9.12142 9.66468 11.18319 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016633 B = 0.004217 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.981882 B = 6638.687999 C = 7756.009664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.181 4.181 3 C -0.140 4.140 4 C -0.136 4.136 5 C -0.172 4.172 6 C -0.055 4.055 7 C 0.145 3.855 8 H 0.089 0.911 9 C -0.162 4.162 10 N -0.738 5.738 11 C 0.513 3.487 12 O -0.535 6.535 13 C -0.131 4.131 14 C 0.038 3.962 15 C -0.526 4.526 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 S 0.102 5.898 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.136 0.864 28 H 0.137 0.863 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.393 0.607 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.813 5.536 -22.659 23.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.299 4.299 3 C -0.170 4.170 4 C -0.166 4.166 5 C -0.290 4.290 6 C -0.095 4.095 7 C 0.039 3.961 8 H 0.107 0.893 9 C -0.221 4.221 10 N -0.392 5.392 11 C 0.301 3.699 12 O -0.410 6.410 13 C -0.171 4.171 14 C 0.000 4.000 15 C -0.564 4.564 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.529 5.529 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 S 0.366 5.634 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.154 0.846 28 H 0.154 0.846 29 H 0.113 0.887 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.226 0.774 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.685 4.687 -21.978 22.483 hybrid contribution -0.475 0.536 0.293 0.774 sum -1.160 5.222 -21.685 22.335 Atomic orbital electron populations 1.20334 0.87950 1.03404 1.02447 1.24459 0.99945 0.95740 1.09736 1.20026 0.92949 0.99128 1.04919 1.20027 0.96230 0.95879 1.04506 1.24333 0.98433 0.96559 1.09630 1.20508 0.90059 1.01888 0.97046 1.20869 0.90449 0.93329 0.91425 0.89320 1.22182 0.95488 1.01286 1.03131 1.46271 1.53808 1.31343 1.07729 1.21497 0.80565 0.86757 0.81059 1.90656 1.47684 1.38723 1.63959 1.21860 0.98364 0.95815 1.01013 1.18882 0.97915 0.97326 0.85838 1.21231 1.31201 1.12092 0.91880 0.92643 1.25019 0.95880 0.95865 0.97587 1.70000 1.43582 1.33415 1.05891 0.86606 0.80465 0.81899 0.79065 1.20686 1.21242 1.19899 1.84178 0.96455 1.09603 1.73132 0.90955 0.91147 0.90566 0.84632 0.84561 0.88701 0.90358 0.91969 0.91490 0.92559 0.77377 0.90328 0.90389 0.95890 0.95889 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.38 36.01 0.37 -0.35 16 2 C -0.18 -2.03 6.51 -36.00 -0.23 -2.27 16 3 C -0.14 -1.55 10.05 -41.21 -0.41 -1.97 16 4 C -0.14 -1.52 10.05 -41.21 -0.41 -1.94 16 5 C -0.17 -1.93 5.49 -36.00 -0.20 -2.12 16 6 C -0.06 -0.52 5.25 -27.88 -0.15 -0.67 16 7 C 0.14 1.81 2.56 -67.93 -0.17 1.64 16 8 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 9 C -0.16 -1.84 9.48 37.16 0.35 -1.49 16 10 N -0.74 -10.71 4.79 -53.81 -0.26 -10.96 16 11 C 0.51 10.14 7.79 -10.99 -0.09 10.05 16 12 O -0.53 -12.86 15.64 5.56 0.09 -12.77 16 13 C -0.13 -2.74 5.64 -27.88 -0.16 -2.90 16 14 C 0.04 1.04 4.26 -27.88 -0.12 0.93 16 15 C -0.53 -15.17 9.11 -34.44 -0.31 -15.48 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -27.81 13.29 55.43 0.74 -27.07 16 19 Si 0.89 21.92 29.54 -169.99 -5.02 16.89 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 S 0.10 1.15 23.30 -107.50 -2.51 -1.35 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.39 4.77 8.59 -40.82 -0.35 4.42 16 35 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 345.88 15.07 5.21 5.21 Total: -1.00 -34.55 345.88 -9.58 -44.13 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -6.20 Total: 0.87 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -1.63 Total: -14.95 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.48 Total: -38.04 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.09 Total: -12.77 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.51 Total: -1.35 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.55 -9.58 -44.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292052815.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.952 kcal (2) G-P(sol) polarization free energy of solvation -34.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds