Wall clock time and date at job start Tue Mar 31 2020 05:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33386 * 125.20107 * 2 1 4 4 C 1.38424 * 114.92099 * 180.02562 * 3 2 1 5 5 C 1.33384 * 114.92035 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.20349 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46912 * 90.00228 * 6 5 4 8 8 H 1.09002 * 109.47069 * 304.99691 * 7 6 5 9 9 C 1.53006 * 109.46846 * 185.00257 * 7 6 5 10 10 N 1.46498 * 109.47465 * 65.00234 * 7 6 5 11 11 C 1.34775 * 119.99962 * 204.99918 * 10 7 6 12 12 O 1.21279 * 120.00095 * 0.02562 * 11 10 7 13 13 C 1.50697 * 120.00075 * 179.97438 * 11 10 7 14 14 C 1.53000 * 109.47410 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.47091 * 180.02562 * 14 13 11 16 16 H 1.07998 * 120.00103 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99630 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00333 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99843 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47155 * 90.00435 * 19 17 15 21 21 H 1.48503 * 109.47412 * 210.00326 * 19 17 15 22 22 H 1.48498 * 109.47275 * 330.00049 * 19 17 15 23 23 S 1.75881 * 109.59619 * 0.24566 * 5 4 3 24 24 H 1.08999 * 109.47643 * 90.00043 * 1 2 3 25 25 H 1.09001 * 109.46764 * 209.99808 * 1 2 3 26 26 H 1.08997 * 109.46991 * 329.99797 * 1 2 3 27 27 H 1.08001 * 122.54079 * 0.05886 * 3 2 1 28 28 H 1.08005 * 122.53856 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47152 * 330.00000 * 6 5 4 30 30 H 1.09001 * 109.46980 * 210.00100 * 6 5 4 31 31 H 1.09001 * 109.47241 * 59.99481 * 9 7 6 32 32 H 1.08996 * 109.46751 * 179.97438 * 9 7 6 33 33 H 1.09002 * 109.46824 * 299.99583 * 9 7 6 34 34 H 0.96998 * 119.99659 * 24.99845 * 10 7 6 35 35 H 1.09001 * 109.47614 * 300.00351 * 13 11 10 36 36 H 1.09001 * 109.46875 * 59.99997 * 13 11 10 37 37 H 1.08997 * 109.47143 * 300.00196 * 14 13 11 38 38 H 1.09001 * 109.47248 * 60.00049 * 14 13 11 39 39 H 0.97004 * 120.00339 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 -0.0006 5 6 3.9751 -0.4476 -0.0005 6 6 5.3861 -0.9769 -0.0016 7 6 5.8648 -1.1557 1.4406 8 1 5.7540 -0.2147 1.9795 9 6 7.3367 -1.5735 1.4412 10 7 5.0629 -2.1914 2.0966 11 6 4.9285 -2.1912 3.4376 12 8 5.4711 -1.3333 4.1013 13 6 4.1032 -3.2563 4.1124 14 6 4.1134 -3.0276 5.6251 15 6 3.2885 -4.0931 6.2999 16 1 2.8050 -4.8568 5.7088 17 6 3.1512 -4.0929 7.6718 18 7 3.7396 -3.1627 8.3915 19 14 2.1281 -5.4132 8.5082 20 1 2.9941 -6.5719 8.8438 21 1 1.5323 -4.8637 9.7525 22 1 1.0446 -5.8536 7.5932 23 16 2.5211 -1.4371 -0.0068 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.8669 2.0895 0.0009 28 1 4.3721 1.6351 -0.0002 29 1 6.0384 -0.2714 -0.5162 30 1 5.4132 -1.9380 -0.5152 31 1 7.9334 -0.8029 0.9531 32 1 7.6778 -1.7004 2.4686 33 1 7.4475 -2.5145 0.9024 34 1 4.6286 -2.8773 1.5657 35 1 3.0780 -3.2088 3.7450 36 1 4.5237 -4.2371 3.8900 37 1 5.1384 -3.0749 5.9928 38 1 3.6927 -2.0469 5.8472 39 1 3.6427 -3.1623 9.3567 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292052815.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:46 Heat of formation + Delta-G solvation = -55.793892 kcal Electronic energy + Delta-G solvation = -19363.245103 eV Core-core repulsion = 16395.504177 eV Total energy + Delta-G solvation = -2967.740927 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.84067 -39.04268 -37.13886 -35.54211 -33.71929 -32.99919 -31.73985 -29.38299 -27.70101 -25.70204 -24.13206 -23.61395 -22.01433 -21.25772 -19.66926 -18.85579 -17.91315 -17.34700 -17.12495 -16.49708 -16.40410 -16.11617 -15.05718 -14.81321 -14.76529 -14.42659 -14.24486 -14.03758 -13.90137 -13.80791 -13.23528 -13.22635 -13.03892 -12.81793 -12.72065 -12.49170 -12.42740 -12.28442 -11.94172 -11.88406 -11.63170 -11.59973 -11.30356 -10.67806 -10.57001 -10.08577 -9.34506 -9.29247 -8.17784 -6.32006 0.08013 0.71975 1.08934 1.41740 1.44756 1.55663 1.75956 1.83795 2.28491 2.45669 3.15088 3.72016 3.87705 4.01553 4.12302 4.15408 4.38511 4.43168 4.51309 4.53790 4.59095 4.68309 4.72245 4.81039 4.81716 4.85245 5.02179 5.09590 5.13215 5.29037 5.31002 5.40199 5.48426 5.59968 5.63068 5.67434 5.85394 6.18059 6.61838 6.86242 7.37342 7.39593 8.94999 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016633 B = 0.004217 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.981882 B = 6638.687999 C = 7756.009664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.193 4.193 3 C -0.155 4.155 4 C -0.148 4.148 5 C -0.183 4.183 6 C -0.045 4.045 7 C 0.143 3.857 8 H 0.059 0.941 9 C -0.157 4.157 10 N -0.714 5.714 11 C 0.514 3.486 12 O -0.588 6.588 13 C -0.121 4.121 14 C 0.045 3.955 15 C -0.543 4.543 16 H 0.075 0.925 17 C -0.006 4.006 18 N -0.938 5.938 19 Si 0.974 3.026 20 H -0.271 1.271 21 H -0.286 1.286 22 H -0.256 1.256 23 S 0.086 5.914 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.122 0.878 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.030 0.970 33 H 0.076 0.924 34 H 0.408 0.592 35 H 0.098 0.902 36 H 0.103 0.897 37 H -0.018 1.018 38 H -0.020 1.020 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.624 4.137 -24.820 25.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.310 4.310 3 C -0.184 4.184 4 C -0.178 4.178 5 C -0.300 4.300 6 C -0.084 4.084 7 C 0.038 3.962 8 H 0.078 0.922 9 C -0.215 4.215 10 N -0.367 5.367 11 C 0.302 3.698 12 O -0.468 6.468 13 C -0.161 4.161 14 C 0.007 3.993 15 C -0.581 4.581 16 H 0.093 0.907 17 C -0.203 4.203 18 N -0.578 5.578 19 Si 0.797 3.203 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.179 1.179 23 S 0.350 5.650 24 H 0.107 0.893 25 H 0.087 0.913 26 H 0.102 0.898 27 H 0.168 0.832 28 H 0.168 0.832 29 H 0.140 0.860 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.245 0.755 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.001 0.999 38 H -0.002 1.002 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.505 3.264 -24.218 24.483 hybrid contribution -0.210 1.049 0.913 1.407 sum -1.715 4.313 -23.304 23.762 Atomic orbital electron populations 1.20418 0.86538 1.03647 1.03613 1.24837 1.01146 0.95576 1.09479 1.20316 0.93185 0.99946 1.04984 1.20330 0.96733 0.96487 1.04232 1.24591 0.99026 0.96595 1.09826 1.20516 0.89412 1.03770 0.94713 1.21031 0.91145 0.91235 0.92822 0.92228 1.22131 0.94549 1.03343 1.01489 1.46021 1.52895 1.31798 1.05948 1.21216 0.80082 0.85803 0.82649 1.90642 1.49961 1.40610 1.65544 1.21636 1.00204 0.97563 0.96672 1.18657 0.94969 0.95114 0.90558 1.21707 1.31223 1.12543 0.92623 0.90696 1.26134 0.97153 0.98472 0.98576 1.70182 1.45395 1.35895 1.06328 0.85322 0.78833 0.78360 0.77738 1.19599 1.21130 1.17938 1.84130 0.97121 1.10267 1.73478 0.89296 0.91350 0.89837 0.83224 0.83234 0.85985 0.88216 0.89276 0.95068 0.90481 0.75525 0.88341 0.87879 0.99946 1.00206 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.35 10.38 71.24 0.74 -0.61 16 2 C -0.19 -4.10 6.51 24.59 0.16 -3.94 16 3 C -0.15 -3.25 10.05 21.22 0.21 -3.04 16 4 C -0.15 -3.10 10.05 21.22 0.21 -2.89 16 5 C -0.18 -3.76 5.49 24.59 0.14 -3.63 16 6 C -0.04 -0.72 5.25 29.85 0.16 -0.56 16 7 C 0.14 3.39 2.56 44.99 0.12 3.50 16 8 H 0.06 1.81 7.58 -2.39 -0.02 1.79 16 9 C -0.16 -3.30 9.48 71.98 0.68 -2.61 16 10 N -0.71 -19.95 4.79 -442.53 -2.12 -22.07 16 11 C 0.51 20.65 7.79 87.66 0.68 21.33 16 12 O -0.59 -29.71 15.64 -3.03 -0.05 -29.76 16 13 C -0.12 -5.08 5.64 29.85 0.17 -4.91 16 14 C 0.04 2.56 4.26 29.85 0.13 2.69 16 15 C -0.54 -31.58 9.11 25.60 0.23 -31.34 16 16 H 0.07 3.97 7.74 -2.91 -0.02 3.95 16 17 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 18 N -0.94 -60.44 13.29 21.45 0.28 -60.15 16 19 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 23 S 0.09 1.82 23.30 -56.49 -1.32 0.50 16 24 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 28 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 29 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.41 9.00 8.59 -92.71 -0.80 8.20 16 35 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 36 H 0.10 3.79 8.14 -2.39 -0.02 3.78 16 37 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 38 H -0.02 -1.33 8.10 -2.39 -0.02 -1.35 16 39 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -78.89 345.88 3.15 -75.74 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.23 Total: 14.76 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 4.09 Total: -25.90 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -1.84 Total: -82.23 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.05 Total: -29.76 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -1.32 Total: 0.50 kcal Total: -78.89 3.15 -75.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292052815.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.943 kcal (2) G-P(sol) polarization free energy of solvation -78.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds