Wall clock time and date at job start Tue Mar 31 2020 05:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33386 * 125.20043 * 2 1 4 4 C 1.38432 * 114.91918 * 179.97438 * 3 2 1 5 5 C 1.33386 * 114.92087 * 0.02562 * 4 3 2 6 6 C 1.50695 * 125.20514 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47178 * 89.99513 * 6 5 4 8 8 H 1.09004 * 109.47111 * 55.00623 * 7 6 5 9 9 C 1.53001 * 109.47344 * 175.00308 * 7 6 5 10 10 N 1.46499 * 109.47538 * 295.00360 * 7 6 5 11 11 C 1.34771 * 120.00224 * 154.99826 * 10 7 6 12 12 O 1.21274 * 120.00277 * 0.02562 * 11 10 7 13 13 C 1.50704 * 119.99895 * 179.97438 * 11 10 7 14 14 C 1.53003 * 109.46985 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.46896 * 180.02562 * 14 13 11 16 16 H 1.08003 * 120.00449 * 359.97438 * 15 14 13 17 17 C 1.37885 * 120.00014 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99697 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00080 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47161 * 59.99469 * 19 17 15 21 21 H 1.48500 * 109.46919 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46979 * 299.99899 * 19 17 15 23 23 S 1.75882 * 125.20464 * 179.69172 * 2 1 3 24 24 H 1.09002 * 109.47152 * 90.00037 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00137 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00118 * 1 2 3 27 27 H 1.07996 * 122.54357 * 359.97438 * 3 2 1 28 28 H 1.08001 * 122.53810 * 179.97438 * 4 3 2 29 29 H 1.08999 * 109.47231 * 209.99979 * 6 5 4 30 30 H 1.09000 * 109.47136 * 329.99696 * 6 5 4 31 31 H 1.09003 * 109.47227 * 59.99855 * 9 7 6 32 32 H 1.08996 * 109.47701 * 180.02562 * 9 7 6 33 33 H 1.09002 * 109.47043 * 300.00108 * 9 7 6 34 34 H 0.97004 * 119.99687 * 334.99668 * 10 7 6 35 35 H 1.08997 * 109.47406 * 300.00292 * 13 11 10 36 36 H 1.09002 * 109.46731 * 60.00173 * 13 11 10 37 37 H 1.08997 * 109.47259 * 300.00347 * 14 13 11 38 38 H 1.08996 * 109.46871 * 60.00285 * 14 13 11 39 39 H 0.96995 * 119.99473 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4477 0.0005 6 6 5.3860 -0.9770 0.0016 7 6 5.8623 -1.1565 1.4444 8 1 5.1593 -1.7922 1.9827 9 6 7.2458 -1.8098 1.4473 10 7 5.9386 0.1515 2.0998 11 6 5.8355 0.2404 3.4406 12 8 5.6800 -0.7624 4.1047 13 6 5.9145 1.5859 4.1149 14 6 5.7708 1.4075 5.6277 15 6 5.8492 2.7530 6.3018 16 1 5.9881 3.6460 5.7105 17 6 5.7446 2.8439 7.6737 18 7 5.5760 1.7564 8.3937 19 14 5.8426 4.5116 8.5094 20 1 4.7487 5.3817 8.0077 21 1 5.7029 4.3385 9.9776 22 1 7.1534 5.1406 8.2070 23 16 2.5210 -1.4371 0.0077 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 1.8669 2.0895 -0.0004 28 1 4.3721 1.6351 0.0002 29 1 5.4141 -1.9378 -0.5125 30 1 6.0393 -0.2713 -0.5115 31 1 7.9489 -1.1742 0.9090 32 1 7.5850 -1.9381 2.4752 33 1 7.1891 -2.7830 0.9597 34 1 6.0633 0.9535 1.5687 35 1 6.8769 2.0472 3.8936 36 1 5.1120 2.2247 3.7461 37 1 4.8085 0.9459 5.8493 38 1 6.5735 0.7688 5.9960 39 1 5.5021 1.8204 9.3587 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292052822.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:49 Heat of formation + Delta-G solvation = -34.455753 kcal Electronic energy + Delta-G solvation = -19330.376535 eV Core-core repulsion = 16363.560899 eV Total energy + Delta-G solvation = -2966.815636 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.42740 -38.10233 -35.92430 -33.40112 -32.58179 -31.40992 -30.36514 -28.53607 -25.69630 -24.84504 -22.97190 -22.17243 -20.68943 -19.77613 -18.79853 -17.02947 -16.83031 -15.86536 -15.63406 -15.38544 -14.75126 -14.41802 -14.14489 -13.78683 -13.44863 -13.36581 -13.11450 -12.96940 -12.56604 -12.26389 -12.17935 -11.98848 -11.84334 -11.63080 -11.39390 -11.11563 -11.00344 -10.88130 -10.77468 -10.59234 -9.90714 -9.61577 -9.13252 -8.94705 -8.75880 -8.49490 -8.46807 -8.28551 -5.92936 -3.97213 0.91712 1.52822 1.91921 2.68894 3.34783 3.36227 3.40547 3.42222 3.61082 4.49934 4.55389 4.73539 4.81661 5.03773 5.10191 5.24027 5.32213 5.40048 5.41788 5.47898 5.54431 5.60707 5.64545 5.72747 5.77085 6.07264 6.12587 6.20358 6.25816 6.29226 6.30870 6.46668 6.85286 6.94958 7.77544 7.90997 7.97997 8.11205 8.42681 8.87664 9.11577 9.65977 11.18031 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017575 B = 0.003927 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.765528 B = 7127.847442 C = 8100.389265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.183 4.183 3 C -0.137 4.137 4 C -0.130 4.130 5 C -0.172 4.172 6 C -0.055 4.055 7 C 0.145 3.855 8 H 0.086 0.914 9 C -0.163 4.163 10 N -0.735 5.735 11 C 0.512 3.488 12 O -0.535 6.535 13 C -0.130 4.130 14 C 0.038 3.962 15 C -0.527 4.527 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 S 0.092 5.908 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.137 0.863 28 H 0.137 0.863 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.394 0.606 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.551 -4.483 -22.653 23.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.300 4.300 3 C -0.167 4.167 4 C -0.160 4.160 5 C -0.289 4.289 6 C -0.095 4.095 7 C 0.040 3.960 8 H 0.105 0.895 9 C -0.221 4.221 10 N -0.389 5.389 11 C 0.300 3.700 12 O -0.411 6.411 13 C -0.170 4.170 14 C 0.001 3.999 15 C -0.565 4.565 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.529 5.529 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 S 0.356 5.644 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.155 0.845 28 H 0.155 0.845 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.228 0.772 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.986 -6.847 -21.950 23.527 hybrid contribution 0.386 2.852 0.273 2.891 sum -4.599 -3.995 -21.676 22.516 Atomic orbital electron populations 1.20325 0.87998 1.03281 1.02439 1.24434 0.99872 0.95674 1.10017 1.20064 0.92996 0.99207 1.04403 1.20013 0.96199 0.95764 1.03982 1.24318 0.98246 0.96518 1.09793 1.20492 0.89835 1.02145 0.97042 1.20838 0.97390 0.86383 0.91417 0.89544 1.22184 0.96614 1.00178 1.03141 1.46216 1.76591 1.08475 1.07646 1.21496 0.74392 0.92970 0.81124 1.90656 1.47770 1.38682 1.63960 1.21851 1.02277 0.91819 1.01030 1.18876 0.98435 0.96779 0.85855 1.21195 1.50429 0.93013 0.91898 0.92716 1.25022 0.95328 0.96409 0.97575 1.69992 1.49398 1.27510 1.05960 0.86664 0.78526 0.84398 0.78401 1.20275 1.21285 1.20261 1.84187 0.96770 1.09742 1.73712 0.90959 0.90485 0.91377 0.84482 0.84545 0.89553 0.89492 0.92493 0.91489 0.92028 0.77235 0.90411 0.90423 0.95903 0.95885 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.38 36.01 0.37 -0.32 16 2 C -0.18 -2.02 6.51 -36.00 -0.23 -2.25 16 3 C -0.14 -1.52 10.05 -41.21 -0.41 -1.93 16 4 C -0.13 -1.42 9.85 -41.21 -0.41 -1.83 16 5 C -0.17 -1.90 5.52 -36.01 -0.20 -2.10 16 6 C -0.06 -0.52 5.25 -27.89 -0.15 -0.67 16 7 C 0.15 1.82 2.56 -67.93 -0.17 1.65 16 8 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 9 C -0.16 -1.85 9.48 37.16 0.35 -1.50 16 10 N -0.74 -10.39 4.66 -53.81 -0.25 -10.64 16 11 C 0.51 10.03 7.79 -10.99 -0.09 9.95 16 12 O -0.54 -12.87 15.64 5.56 0.09 -12.78 16 13 C -0.13 -2.70 5.64 -27.88 -0.16 -2.85 16 14 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 15 C -0.53 -15.18 9.11 -34.44 -0.31 -15.50 16 16 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -27.79 13.29 55.43 0.74 -27.05 16 19 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 S 0.09 1.04 23.31 -107.50 -2.51 -1.47 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 28 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.39 4.44 8.56 -40.82 -0.35 4.09 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 LS Contribution 345.56 15.07 5.21 5.21 Total: -1.00 -34.64 345.56 -9.57 -44.21 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.20 Total: 0.47 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -1.62 Total: -14.81 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.49 Total: -37.69 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.09 Total: -12.78 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.51 Total: -1.47 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.64 -9.57 -44.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292052822.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.755 kcal (2) G-P(sol) polarization free energy of solvation -34.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds