Wall clock time and date at job start Tue Mar 31 2020 05:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99551 * 2 1 4 4 H 1.48501 * 109.47483 * 269.99824 * 3 2 1 5 5 H 1.48502 * 109.47495 * 30.00338 * 3 2 1 6 6 H 1.48502 * 109.47376 * 149.99955 * 3 2 1 7 7 C 1.37871 * 120.00506 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 180.02562 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 H 1.09008 * 109.47304 * 304.99667 * 15 14 13 17 17 O 1.42902 * 109.47328 * 64.99617 * 15 14 13 18 18 C 1.50700 * 109.47144 * 185.00065 * 15 14 13 19 19 C 1.38269 * 119.98590 * 279.72193 * 18 15 14 20 20 C 1.38221 * 120.05286 * 179.72872 * 19 18 15 21 21 C 1.38217 * 120.02201 * 0.54784 * 20 19 18 22 22 C 1.38444 * 119.97700 * 359.72696 * 21 20 19 23 23 F 1.35098 * 120.02210 * 180.02562 * 22 21 20 24 24 C 1.38169 * 119.99063 * 99.99850 * 18 15 14 25 25 H 0.97000 * 120.00920 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 27 27 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 28 28 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 29 29 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 30 30 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 31 31 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 32 32 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 33 33 H 0.96696 * 113.99765 * 60.00422 * 17 15 14 34 34 H 1.08005 * 119.96946 * 359.97438 * 19 18 15 35 35 H 1.08000 * 119.98871 * 180.27759 * 20 19 18 36 36 H 1.08007 * 120.01419 * 179.70455 * 21 20 19 37 37 H 1.08006 * 120.01507 * 0.02562 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6363 -0.0014 11 6 5.5287 -2.6363 -0.0001 12 8 6.1350 -1.5859 0.0012 13 7 6.2026 -3.8034 -0.0016 14 6 7.6676 -3.8033 0.0057 15 6 8.1776 -5.2457 0.0093 16 1 7.7389 -5.7843 0.8494 17 8 7.8057 -5.8856 -1.2132 18 6 9.6789 -5.2474 0.1406 19 6 10.4699 -5.0125 -0.9688 20 6 11.8469 -5.0081 -0.8488 21 6 12.4349 -5.2498 0.3784 22 6 11.6440 -5.4907 1.4889 23 9 12.2178 -5.7266 2.6891 24 6 10.2645 -5.4892 1.3685 25 1 -0.4851 0.8400 0.0004 26 1 3.8745 -0.6806 0.8905 27 1 3.8752 -0.6794 -0.8895 28 1 3.6587 -3.1492 -0.8920 29 1 3.6580 -3.1512 0.8879 30 1 5.7176 -4.6435 -0.0031 31 1 8.0353 -3.2901 -0.8828 32 1 8.0265 -3.2889 0.8971 33 1 8.1618 -5.4590 -2.0045 34 1 10.0113 -4.8283 -1.9292 35 1 12.4637 -4.8200 -1.7152 36 1 13.5110 -5.2511 0.4711 37 1 9.6466 -5.6775 2.2341 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292281878.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:45 Heat of formation + Delta-G solvation = -120.738572 kcal Electronic energy + Delta-G solvation = -20698.262598 eV Core-core repulsion = 17161.492282 eV Total energy + Delta-G solvation = -3536.770316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.28761 -40.23683 -39.15066 -37.34596 -34.25898 -33.47571 -32.29175 -31.29989 -30.89405 -28.63290 -26.05925 -23.96850 -23.30040 -21.70139 -21.22764 -19.70842 -18.36580 -17.37707 -17.06425 -16.66175 -16.62560 -15.98600 -15.94272 -15.71226 -15.26297 -14.80697 -14.47130 -14.17544 -13.98758 -13.56622 -13.25855 -13.07588 -12.83467 -12.55835 -12.39255 -12.12819 -12.06261 -11.46502 -11.41713 -10.95877 -10.68370 -10.16426 -10.04775 -9.78795 -9.50917 -9.27625 -9.18227 -9.12685 -8.95090 -8.50510 -6.02663 -4.01461 0.62395 0.71025 3.01037 3.09323 3.33136 3.37928 3.44547 3.55399 3.74061 4.01434 4.16004 4.26355 4.45513 4.51094 4.54309 4.65152 4.78424 4.90304 5.27379 5.32735 5.33853 5.42171 5.54246 5.62912 5.67137 5.80422 5.94877 6.08383 6.10266 6.38051 6.52978 6.69786 7.12114 7.36267 7.43559 7.73241 7.79707 8.50005 8.62856 9.00489 9.60338 11.10173 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032958 B = 0.002761 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.353414 B =10138.626125 C =10355.322264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.122 4.122 11 C 0.510 3.490 12 O -0.542 6.542 13 N -0.738 5.738 14 C 0.093 3.907 15 C 0.138 3.862 16 H 0.118 0.882 17 O -0.547 6.547 18 C -0.085 4.085 19 C -0.120 4.120 20 C -0.086 4.086 21 C -0.153 4.153 22 C 0.101 3.899 23 F -0.138 7.138 24 C -0.141 4.141 25 H 0.263 0.737 26 H 0.023 0.977 27 H 0.019 0.981 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.403 0.597 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.377 0.623 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.929 -14.615 -1.013 28.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.162 4.162 11 C 0.299 3.701 12 O -0.418 6.418 13 N -0.392 5.392 14 C -0.032 4.032 15 C 0.079 3.921 16 H 0.136 0.864 17 O -0.353 6.353 18 C -0.086 4.086 19 C -0.138 4.138 20 C -0.104 4.104 21 C -0.172 4.172 22 C 0.082 3.918 23 F -0.117 7.117 24 C -0.160 4.160 25 H 0.073 0.927 26 H 0.041 0.959 27 H 0.037 0.963 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.238 0.762 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.226 0.774 34 H 0.148 0.852 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 24.918 -14.121 -0.557 28.646 hybrid contribution 0.670 0.824 -0.094 1.066 sum 25.588 -13.297 -0.651 28.844 Atomic orbital electron populations 1.69908 1.06293 1.26972 1.51082 1.24973 0.94710 0.99235 0.94350 0.86793 0.80606 0.83397 0.78726 1.20253 1.21451 1.18557 1.21118 0.89283 0.94578 1.51306 0.90907 1.19369 0.96415 0.90230 0.97632 1.21665 0.87781 1.03262 1.03444 1.21582 0.91648 0.82663 0.74232 1.90657 1.70847 1.31504 1.48772 1.46063 1.05760 1.09635 1.77766 1.21909 0.82332 0.95579 1.03340 1.21069 0.88814 0.93198 0.89067 0.86404 1.86658 1.76540 1.56805 1.15300 1.20248 0.96408 0.98732 0.93228 1.20988 0.93813 1.00425 0.98572 1.21004 0.94710 0.97675 0.97013 1.21222 1.00740 1.03011 0.92209 1.17676 0.91315 1.01760 0.81067 1.91520 1.84995 1.91905 1.43270 1.21002 0.93161 1.03039 0.98771 0.92715 0.95850 0.96308 0.89509 0.89544 0.76195 0.91190 0.90641 0.77386 0.85212 0.84635 0.84585 0.84310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.07 13.96 55.43 0.77 -27.29 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.62 27.47 -169.99 -4.67 17.96 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.26 -6.71 6.54 56.52 0.37 -6.34 16 7 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.76 16 9 C 0.00 0.04 3.33 -27.89 -0.09 -0.06 16 10 C -0.12 -2.33 5.64 -27.89 -0.16 -2.49 16 11 C 0.51 9.09 7.83 -10.98 -0.09 9.00 16 12 O -0.54 -11.85 15.98 5.55 0.09 -11.76 16 13 N -0.74 -9.34 5.50 -60.30 -0.33 -9.67 16 14 C 0.09 0.99 5.29 -4.04 -0.02 0.96 16 15 C 0.14 1.09 3.24 -27.88 -0.09 1.00 16 16 H 0.12 0.86 8.00 -51.92 -0.42 0.44 16 17 O -0.55 -4.39 13.13 -35.23 -0.46 -4.85 16 18 C -0.09 -0.66 4.97 -104.64 -0.52 -1.18 16 19 C -0.12 -0.79 9.32 -39.58 -0.37 -1.16 16 20 C -0.09 -0.53 10.04 -39.60 -0.40 -0.93 16 21 C -0.15 -1.09 10.03 -39.51 -0.40 -1.49 16 22 C 0.10 0.88 7.30 -39.42 -0.29 0.59 16 23 F -0.14 -1.34 17.27 2.25 0.04 -1.31 16 24 C -0.14 -1.15 9.65 -39.52 -0.38 -1.54 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 27 H 0.02 0.48 7.53 -51.92 -0.39 0.09 16 28 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.40 4.18 8.47 -40.82 -0.35 3.83 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.38 1.97 7.49 45.56 0.34 2.32 16 34 H 0.13 0.58 6.77 -52.48 -0.36 0.22 16 35 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 36 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 37 H 0.14 0.97 8.04 -52.48 -0.42 0.54 16 LS Contribution 324.29 15.07 4.89 4.89 Total: -1.00 -35.44 324.29 -6.99 -42.43 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -4.08 Total: 0.33 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -3.23 Total: -10.72 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.44 Total: -36.96 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.37 Total: -16.62 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.67 Total: 17.96 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.44 -6.99 -42.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292281878.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.313 kcal (2) G-P(sol) polarization free energy of solvation -35.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds