Wall clock time and date at job start Tue Mar 31 2020 05:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99551 * 2 1 4 4 H 1.48501 * 109.47483 * 269.99824 * 3 2 1 5 5 H 1.48502 * 109.47495 * 30.00338 * 3 2 1 6 6 H 1.48502 * 109.47376 * 149.99955 * 3 2 1 7 7 C 1.37871 * 120.00506 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 180.02562 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 H 1.09008 * 109.47304 * 304.99667 * 15 14 13 17 17 O 1.42902 * 109.47328 * 64.99617 * 15 14 13 18 18 C 1.50700 * 109.47144 * 185.00065 * 15 14 13 19 19 C 1.38269 * 119.98590 * 279.72193 * 18 15 14 20 20 C 1.38221 * 120.05286 * 179.72872 * 19 18 15 21 21 C 1.38217 * 120.02201 * 0.54784 * 20 19 18 22 22 C 1.38444 * 119.97700 * 359.72696 * 21 20 19 23 23 F 1.35098 * 120.02210 * 180.02562 * 22 21 20 24 24 C 1.38169 * 119.99063 * 99.99850 * 18 15 14 25 25 H 0.97000 * 120.00920 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 27 27 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 28 28 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 29 29 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 30 30 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 31 31 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 32 32 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 33 33 H 0.96696 * 113.99765 * 60.00422 * 17 15 14 34 34 H 1.08005 * 119.96946 * 359.97438 * 19 18 15 35 35 H 1.08000 * 119.98871 * 180.27759 * 20 19 18 36 36 H 1.08007 * 120.01419 * 179.70455 * 21 20 19 37 37 H 1.08006 * 120.01507 * 0.02562 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6363 -0.0014 11 6 5.5287 -2.6363 -0.0001 12 8 6.1350 -1.5859 0.0012 13 7 6.2026 -3.8034 -0.0016 14 6 7.6676 -3.8033 0.0057 15 6 8.1776 -5.2457 0.0093 16 1 7.7389 -5.7843 0.8494 17 8 7.8057 -5.8856 -1.2132 18 6 9.6789 -5.2474 0.1406 19 6 10.4699 -5.0125 -0.9688 20 6 11.8469 -5.0081 -0.8488 21 6 12.4349 -5.2498 0.3784 22 6 11.6440 -5.4907 1.4889 23 9 12.2178 -5.7266 2.6891 24 6 10.2645 -5.4892 1.3685 25 1 -0.4851 0.8400 0.0004 26 1 3.8745 -0.6806 0.8905 27 1 3.8752 -0.6794 -0.8895 28 1 3.6587 -3.1492 -0.8920 29 1 3.6580 -3.1512 0.8879 30 1 5.7176 -4.6435 -0.0031 31 1 8.0353 -3.2901 -0.8828 32 1 8.0265 -3.2889 0.8971 33 1 8.1618 -5.4590 -2.0045 34 1 10.0113 -4.8283 -1.9292 35 1 12.4637 -4.8200 -1.7152 36 1 13.5110 -5.2511 0.4711 37 1 9.6466 -5.6775 2.2341 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292281878.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:44 Heat of formation + Delta-G solvation = -146.909616 kcal Electronic energy + Delta-G solvation = -20699.397459 eV Core-core repulsion = 17161.492282 eV Total energy + Delta-G solvation = -3537.905177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.94556 -41.03535 -40.28113 -38.04636 -35.59924 -35.29066 -33.36078 -32.82346 -31.44454 -29.67415 -27.69205 -24.91463 -23.83151 -22.98456 -22.33975 -21.14419 -19.22974 -18.97861 -17.85019 -17.68906 -17.25990 -17.15426 -16.74917 -16.64009 -16.31088 -16.20930 -15.84836 -15.16576 -14.81933 -14.68029 -14.56641 -14.45961 -14.07246 -13.48448 -13.40841 -13.37841 -12.88851 -12.79968 -12.68596 -12.11263 -12.03988 -11.95886 -11.75959 -11.39257 -11.34600 -10.77615 -10.76572 -10.12352 -10.00531 -9.72291 -8.30828 -6.33807 0.07312 0.17521 1.33801 1.35810 1.50778 1.69041 2.17464 2.35602 2.55390 3.04851 3.13463 3.43117 3.56286 3.72484 3.77807 4.04467 4.07713 4.10313 4.17335 4.37923 4.42077 4.50799 4.63369 4.73452 4.83583 5.02300 5.02964 5.10653 5.30011 5.32945 5.40024 5.45918 5.46701 5.62129 5.86047 6.24293 6.56860 6.66823 6.72968 7.30795 7.31733 8.84880 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032958 B = 0.002761 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.353414 B =10138.626125 C =10355.322264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.012 3.988 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.529 4.529 8 H 0.050 0.950 9 C 0.005 3.995 10 C -0.117 4.117 11 C 0.515 3.485 12 O -0.587 6.587 13 N -0.714 5.714 14 C 0.093 3.907 15 C 0.155 3.845 16 H 0.125 0.875 17 O -0.555 6.555 18 C -0.095 4.095 19 C -0.121 4.121 20 C -0.086 4.086 21 C -0.156 4.156 22 C 0.075 3.925 23 F -0.151 7.151 24 C -0.151 4.151 25 H 0.267 0.733 26 H 0.009 0.991 27 H 0.009 0.991 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.418 0.582 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.390 0.610 34 H 0.153 0.847 35 H 0.163 0.837 36 H 0.151 0.849 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.636 -15.193 -1.932 30.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.185 4.185 3 Si 0.764 3.236 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.567 4.567 8 H 0.068 0.932 9 C -0.033 4.033 10 C -0.157 4.157 11 C 0.303 3.697 12 O -0.467 6.467 13 N -0.367 5.367 14 C -0.031 4.031 15 C 0.095 3.905 16 H 0.143 0.857 17 O -0.363 6.363 18 C -0.096 4.096 19 C -0.139 4.139 20 C -0.104 4.104 21 C -0.174 4.174 22 C 0.056 3.944 23 F -0.129 7.129 24 C -0.170 4.170 25 H 0.076 0.924 26 H 0.028 0.972 27 H 0.027 0.973 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.255 0.745 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.241 0.759 34 H 0.171 0.829 35 H 0.181 0.819 36 H 0.169 0.831 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 26.639 -14.760 -1.486 30.491 hybrid contribution 0.150 0.900 0.158 0.926 sum 26.790 -13.860 -1.328 30.192 Atomic orbital electron populations 1.70021 1.07805 1.28103 1.52556 1.25817 0.95502 1.02907 0.94299 0.85814 0.79197 0.79439 0.79164 1.19285 1.20436 1.18581 1.21447 0.91315 0.93709 1.50250 0.93169 1.19224 0.93870 0.93876 0.96361 1.21494 0.89304 0.99814 1.05097 1.21173 0.90986 0.83312 0.74210 1.90645 1.71373 1.33319 1.51383 1.45787 1.06903 1.08680 1.75371 1.22056 0.80475 0.97628 1.02967 1.20854 0.88948 0.91211 0.89474 0.85716 1.86647 1.76775 1.57001 1.15833 1.20250 0.96247 0.99614 0.93486 1.21355 0.94157 0.99222 0.99200 1.21360 0.94936 0.96662 0.97463 1.21511 1.01588 1.02212 0.92128 1.17962 0.91869 1.03351 0.81232 1.91483 1.85179 1.92222 1.44059 1.21147 0.93254 1.03225 0.99373 0.92385 0.97239 0.97253 0.87874 0.87994 0.74492 0.91104 0.91580 0.75913 0.82921 0.81929 0.83127 0.83854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.22 13.96 21.44 0.30 -58.92 16 2 C 0.01 0.73 5.47 84.65 0.46 1.20 16 3 Si 0.94 46.75 27.47 68.60 1.88 48.63 16 4 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.26 -12.93 6.54 99.48 0.65 -12.28 16 7 C -0.53 -30.52 9.66 25.60 0.25 -30.28 16 8 H 0.05 3.04 7.99 -2.91 -0.02 3.02 16 9 C 0.00 0.23 3.33 29.85 0.10 0.33 16 10 C -0.12 -4.35 5.64 29.85 0.17 -4.18 16 11 C 0.51 17.58 7.83 87.66 0.69 18.27 16 12 O -0.59 -25.23 15.98 -3.04 -0.05 -25.28 16 13 N -0.71 -16.48 5.50 -463.07 -2.55 -19.03 16 14 C 0.09 1.78 5.29 86.38 0.46 2.24 16 15 C 0.15 2.07 3.24 29.85 0.10 2.17 16 16 H 0.13 1.52 8.00 -2.38 -0.02 1.50 16 17 O -0.55 -7.27 13.13 -148.98 -1.96 -9.22 16 18 C -0.09 -1.28 4.97 -19.87 -0.10 -1.38 16 19 C -0.12 -1.28 9.32 22.27 0.21 -1.07 16 20 C -0.09 -0.84 10.04 22.26 0.22 -0.61 16 21 C -0.16 -1.97 10.03 22.31 0.22 -1.74 16 22 C 0.07 1.25 7.30 22.38 0.16 1.42 16 23 F -0.15 -2.93 17.27 44.97 0.78 -2.16 16 24 C -0.15 -2.34 9.65 22.31 0.22 -2.12 16 25 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 26 H 0.01 0.48 7.16 -2.39 -0.02 0.46 16 27 H 0.01 0.47 7.53 -2.38 -0.02 0.45 16 28 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 29 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 30 H 0.42 7.45 8.47 -92.71 -0.79 6.66 16 31 H 0.07 1.39 8.14 -2.38 -0.02 1.38 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.39 2.80 7.49 -74.06 -0.56 2.25 16 34 H 0.15 0.82 6.77 -2.91 -0.02 0.80 16 35 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 36 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 37 H 0.14 1.92 8.04 -2.91 -0.02 1.90 16 Total: -1.00 -76.54 324.29 1.27 -75.28 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -0.29 Total: 6.48 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: 3.15 Total: -15.77 kcal Atomic # 7 Polarization: -75.71 SS G_CDS: -2.25 Total: -77.96 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -2.01 Total: -34.50 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.78 Total: -2.16 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.88 Total: 48.63 kcal Total: -76.54 1.27 -75.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292281878.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.634 kcal (2) G-P(sol) polarization free energy of solvation -76.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds