Wall clock time and date at job start Tue Mar 31 2020 05:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 120.00355 * 2 1 4 4 H 1.48502 * 109.47450 * 240.00276 * 3 2 1 5 5 H 1.48508 * 109.46927 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47341 * 119.99899 * 3 2 1 7 7 C 1.37874 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00261 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99831 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46817 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46817 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99963 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00134 * 180.02562 * 11 10 9 14 14 C 1.46492 * 119.99929 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.46922 * 179.97438 * 14 13 11 16 16 H 1.09006 * 109.47078 * 60.00363 * 15 14 13 17 17 O 1.42897 * 109.47059 * 300.00352 * 15 14 13 18 18 C 1.50703 * 109.47127 * 180.02562 * 15 14 13 19 19 C 1.38265 * 119.98460 * 265.00137 * 18 15 14 20 20 C 1.38230 * 120.05232 * 179.97438 * 19 18 15 21 21 C 1.38221 * 120.01866 * 359.97438 * 20 19 18 22 22 C 1.38437 * 119.97771 * 359.97438 * 21 20 19 23 23 F 1.35096 * 120.02231 * 180.02562 * 22 21 20 24 24 C 1.38170 * 119.98887 * 84.97899 * 18 15 14 25 25 H 0.97002 * 119.99877 * 359.97438 * 1 2 3 26 26 H 1.08989 * 109.47134 * 60.00278 * 9 7 2 27 27 H 1.08996 * 109.46812 * 299.99798 * 9 7 2 28 28 H 1.09006 * 109.47398 * 60.00153 * 10 9 7 29 29 H 1.09002 * 109.47550 * 299.99567 * 10 9 7 30 30 H 0.97003 * 119.99790 * 359.97438 * 13 11 10 31 31 H 1.08997 * 109.47413 * 60.00402 * 14 13 11 32 32 H 1.08995 * 109.47579 * 299.99849 * 14 13 11 33 33 H 0.96699 * 113.99711 * 299.99150 * 17 15 14 34 34 H 1.07998 * 119.98228 * 359.70181 * 19 18 15 35 35 H 1.07993 * 119.98797 * 179.97438 * 20 19 18 36 36 H 1.08010 * 120.00681 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.01158 * 0.04483 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4917 -4.9671 0.0001 12 8 0.2788 -4.9671 0.0010 13 7 2.1655 -6.1344 0.0007 14 6 1.4330 -7.4030 0.0019 15 6 2.4272 -8.5660 0.0018 16 1 3.0545 -8.5078 0.8914 17 8 3.2480 -8.4909 -1.1656 18 6 1.6737 -9.8711 0.0024 19 6 1.4190 -10.5214 1.1957 20 6 0.7275 -11.7183 1.1979 21 6 0.2894 -12.2660 0.0068 22 6 0.5429 -11.6152 -1.1884 23 9 0.1147 -12.1495 -2.3530 24 6 1.2372 -10.4171 -1.1895 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8902 27 1 0.6247 -2.5570 0.8897 28 1 2.8719 -3.6043 0.8895 29 1 2.8719 -3.6044 -0.8905 30 1 3.1355 -6.1344 0.0004 31 1 0.8061 -7.4615 -0.8878 32 1 0.8067 -7.4602 0.8921 33 1 2.7553 -8.5367 -1.9963 34 1 1.7644 -10.0963 2.1264 35 1 0.5295 -12.2256 2.1305 36 1 -0.2505 -13.2015 0.0087 37 1 1.4366 -9.9091 -2.1214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292281880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:47 Heat of formation + Delta-G solvation = -123.292816 kcal Electronic energy + Delta-G solvation = -20669.652579 eV Core-core repulsion = 17132.771503 eV Total energy + Delta-G solvation = -3536.881076 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.25050 -40.17326 -39.02135 -37.30486 -34.13022 -33.43563 -32.10220 -31.07899 -30.92684 -28.44536 -25.72961 -23.99795 -23.07686 -21.77118 -21.45838 -19.65668 -18.37282 -17.13472 -16.97208 -16.61524 -16.44756 -15.94925 -15.64994 -15.62874 -15.16664 -14.66626 -14.44425 -14.36058 -14.09340 -13.53656 -13.14546 -12.90815 -12.79333 -12.36134 -12.15953 -11.98586 -11.79880 -11.51884 -11.15741 -10.90198 -10.66263 -10.56865 -9.94463 -9.66347 -9.46108 -9.19931 -9.11911 -8.99514 -8.83594 -8.31061 -5.95228 -3.99711 0.67391 0.75190 3.05808 3.24117 3.35194 3.39007 3.40549 3.44173 3.82753 4.00969 4.22498 4.28290 4.48506 4.53594 4.58775 4.76400 4.78922 4.96927 5.31236 5.39606 5.45533 5.49946 5.59802 5.66050 5.79595 5.85621 6.00322 6.23971 6.25907 6.42528 6.64927 6.90357 7.16474 7.74872 7.87010 7.87593 8.08007 8.39491 8.76736 9.08767 9.63774 11.15726 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.040026 B = 0.002567 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.381398 B =10904.506501 C =10971.035864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.509 3.491 12 O -0.536 6.536 13 N -0.740 5.740 14 C 0.093 3.907 15 C 0.138 3.862 16 H 0.120 0.880 17 O -0.549 6.549 18 C -0.085 4.085 19 C -0.117 4.117 20 C -0.087 4.087 21 C -0.154 4.154 22 C 0.102 3.898 23 F -0.139 7.139 24 C -0.144 4.144 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.402 0.598 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.378 0.622 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.013 -25.983 0.945 26.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.169 4.169 11 C 0.298 3.702 12 O -0.411 6.411 13 N -0.395 5.395 14 C -0.032 4.032 15 C 0.079 3.921 16 H 0.137 0.863 17 O -0.355 6.355 18 C -0.086 4.086 19 C -0.136 4.136 20 C -0.105 4.105 21 C -0.173 4.173 22 C 0.083 3.917 23 F -0.117 7.117 24 C -0.163 4.163 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.237 0.763 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.227 0.773 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.401 -25.819 1.335 26.225 hybrid contribution 0.264 0.637 -0.617 0.925 sum 4.664 -25.182 0.718 25.621 Atomic orbital electron populations 1.69986 1.06067 1.26697 1.50138 1.25026 0.94829 0.99231 0.95306 0.86647 0.79537 0.83152 0.78552 1.20244 1.21298 1.20243 1.21193 0.92913 0.91028 1.51478 0.92629 1.18895 0.93178 0.89385 0.98591 1.21865 1.00701 0.91779 1.02571 1.21611 0.88636 0.85634 0.74328 1.90675 1.14523 1.87648 1.48257 1.46092 1.10346 1.04928 1.78110 1.21886 0.94507 0.83471 1.03351 1.21100 0.91443 0.89168 0.90415 0.86250 1.86635 1.36851 1.96189 1.15816 1.20278 0.98185 0.97025 0.93084 1.21107 0.99253 0.95399 0.97793 1.21038 0.96472 0.95320 0.97701 1.21216 1.02986 1.01598 0.91454 1.17631 0.98689 0.93723 0.81651 1.91519 1.87872 1.85761 1.46559 1.20859 1.00339 0.95682 0.99399 0.92894 0.95853 0.95853 0.90196 0.90160 0.76336 0.91372 0.90603 0.77344 0.84824 0.84638 0.84614 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.56 13.29 55.43 0.74 -26.83 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.53 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.61 5.64 -27.88 -0.16 -2.77 16 11 C 0.51 9.69 7.83 -10.98 -0.09 9.60 16 12 O -0.54 -12.59 15.98 5.56 0.09 -12.51 16 13 N -0.74 -9.98 5.45 -60.30 -0.33 -10.31 16 14 C 0.09 1.06 5.32 -4.04 -0.02 1.03 16 15 C 0.14 1.15 3.30 -27.88 -0.09 1.06 16 16 H 0.12 0.87 8.05 -51.93 -0.42 0.46 16 17 O -0.55 -4.81 12.88 -35.23 -0.45 -5.27 16 18 C -0.08 -0.69 5.00 -104.64 -0.52 -1.21 16 19 C -0.12 -0.84 9.68 -39.57 -0.38 -1.22 16 20 C -0.09 -0.57 10.04 -39.59 -0.40 -0.97 16 21 C -0.15 -1.15 10.03 -39.51 -0.40 -1.55 16 22 C 0.10 0.93 7.30 -39.42 -0.29 0.64 16 23 F -0.14 -1.40 17.27 2.25 0.04 -1.36 16 24 C -0.14 -1.22 9.31 -39.52 -0.37 -1.59 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.02 0.69 8.10 -51.94 -0.42 0.27 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 28 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 30 H 0.40 4.46 8.35 -40.82 -0.34 4.11 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.38 2.44 7.39 45.56 0.34 2.78 16 34 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 36 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 37 H 0.14 0.94 6.61 -52.49 -0.35 0.60 16 LS Contribution 327.39 15.07 4.93 4.93 Total: -1.00 -35.38 327.39 -7.36 -42.74 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -4.11 Total: 1.74 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -3.24 Total: -9.85 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.41 Total: -37.14 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.36 Total: -17.77 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.38 -7.36 -42.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292281880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.557 kcal (2) G-P(sol) polarization free energy of solvation -35.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds