Wall clock time and date at job start Tue Mar 31 2020 05:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 120.00355 * 2 1 4 4 H 1.48502 * 109.47450 * 240.00276 * 3 2 1 5 5 H 1.48508 * 109.46927 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47341 * 119.99899 * 3 2 1 7 7 C 1.37874 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00261 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99831 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46817 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46817 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99963 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00134 * 180.02562 * 11 10 9 14 14 C 1.46492 * 119.99929 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.46922 * 179.97438 * 14 13 11 16 16 H 1.09006 * 109.47078 * 60.00363 * 15 14 13 17 17 O 1.42897 * 109.47059 * 300.00352 * 15 14 13 18 18 C 1.50703 * 109.47127 * 180.02562 * 15 14 13 19 19 C 1.38265 * 119.98460 * 265.00137 * 18 15 14 20 20 C 1.38230 * 120.05232 * 179.97438 * 19 18 15 21 21 C 1.38221 * 120.01866 * 359.97438 * 20 19 18 22 22 C 1.38437 * 119.97771 * 359.97438 * 21 20 19 23 23 F 1.35096 * 120.02231 * 180.02562 * 22 21 20 24 24 C 1.38170 * 119.98887 * 84.97899 * 18 15 14 25 25 H 0.97002 * 119.99877 * 359.97438 * 1 2 3 26 26 H 1.08989 * 109.47134 * 60.00278 * 9 7 2 27 27 H 1.08996 * 109.46812 * 299.99798 * 9 7 2 28 28 H 1.09006 * 109.47398 * 60.00153 * 10 9 7 29 29 H 1.09002 * 109.47550 * 299.99567 * 10 9 7 30 30 H 0.97003 * 119.99790 * 359.97438 * 13 11 10 31 31 H 1.08997 * 109.47413 * 60.00402 * 14 13 11 32 32 H 1.08995 * 109.47579 * 299.99849 * 14 13 11 33 33 H 0.96699 * 113.99711 * 299.99150 * 17 15 14 34 34 H 1.07998 * 119.98228 * 359.70181 * 19 18 15 35 35 H 1.07993 * 119.98797 * 179.97438 * 20 19 18 36 36 H 1.08010 * 120.00681 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.01158 * 0.04483 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4917 -4.9671 0.0001 12 8 0.2788 -4.9671 0.0010 13 7 2.1655 -6.1344 0.0007 14 6 1.4330 -7.4030 0.0019 15 6 2.4272 -8.5660 0.0018 16 1 3.0545 -8.5078 0.8914 17 8 3.2480 -8.4909 -1.1656 18 6 1.6737 -9.8711 0.0024 19 6 1.4190 -10.5214 1.1957 20 6 0.7275 -11.7183 1.1979 21 6 0.2894 -12.2660 0.0068 22 6 0.5429 -11.6152 -1.1884 23 9 0.1147 -12.1495 -2.3530 24 6 1.2372 -10.4171 -1.1895 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8902 27 1 0.6247 -2.5570 0.8897 28 1 2.8719 -3.6043 0.8895 29 1 2.8719 -3.6044 -0.8905 30 1 3.1355 -6.1344 0.0004 31 1 0.8061 -7.4615 -0.8878 32 1 0.8067 -7.4602 0.8921 33 1 2.7553 -8.5367 -1.9963 34 1 1.7644 -10.0963 2.1264 35 1 0.5295 -12.2256 2.1305 36 1 -0.2505 -13.2015 0.0087 37 1 1.4366 -9.9091 -2.1214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292281880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:47 Heat of formation + Delta-G solvation = -149.370770 kcal Electronic energy + Delta-G solvation = -20670.783404 eV Core-core repulsion = 17132.771503 eV Total energy + Delta-G solvation = -3538.011901 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.94676 -41.02380 -40.26036 -38.07067 -35.60759 -35.27782 -33.11069 -32.62388 -31.59133 -29.51746 -27.49784 -25.04550 -23.70978 -23.26928 -22.41360 -21.14517 -19.05862 -18.83251 -17.80412 -17.61596 -17.23640 -17.11512 -16.71703 -16.63959 -16.48516 -16.18441 -15.81706 -15.13594 -14.83870 -14.58842 -14.46553 -14.16479 -14.04949 -13.47150 -13.34494 -13.22388 -12.90267 -12.76072 -12.50579 -12.44638 -12.17235 -11.89466 -11.63470 -11.34983 -11.31334 -10.73509 -10.55483 -10.10666 -10.00958 -9.70727 -8.17128 -6.31229 0.08261 0.17909 1.42869 1.47400 1.55065 1.71906 2.17588 2.44459 2.57336 3.15786 3.17827 3.36494 3.56992 3.70374 3.79699 4.03476 4.08990 4.16171 4.21092 4.36500 4.52663 4.57705 4.68757 4.74953 4.79973 5.03833 5.09757 5.11520 5.30956 5.42067 5.42829 5.52075 5.64754 5.86578 5.86982 6.18774 6.55853 6.63216 6.87363 7.35210 7.39269 8.95373 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.040026 B = 0.002567 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.381398 B =10904.506501 C =10971.035864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.974 3.026 4 H -0.263 1.263 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.076 0.924 9 C 0.042 3.958 10 C -0.119 4.119 11 C 0.511 3.489 12 O -0.591 6.591 13 N -0.712 5.712 14 C 0.091 3.909 15 C 0.156 3.844 16 H 0.138 0.862 17 O -0.557 6.557 18 C -0.096 4.096 19 C -0.118 4.118 20 C -0.087 4.087 21 C -0.156 4.156 22 C 0.075 3.925 23 F -0.151 7.151 24 C -0.154 4.154 25 H 0.263 0.737 26 H -0.019 1.019 27 H -0.018 1.018 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.419 0.581 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.387 0.613 34 H 0.156 0.844 35 H 0.164 0.836 36 H 0.151 0.849 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.527 -26.620 1.823 27.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.094 0.906 9 C 0.004 3.996 10 C -0.159 4.159 11 C 0.299 3.701 12 O -0.471 6.471 13 N -0.366 5.366 14 C -0.033 4.033 15 C 0.096 3.904 16 H 0.155 0.845 17 O -0.364 6.364 18 C -0.097 4.097 19 C -0.136 4.136 20 C -0.105 4.105 21 C -0.175 4.175 22 C 0.056 3.944 23 F -0.130 7.130 24 C -0.173 4.173 25 H 0.071 0.929 26 H 0.000 1.000 27 H 0.001 0.999 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.256 0.744 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.237 0.763 34 H 0.173 0.827 35 H 0.182 0.818 36 H 0.169 0.831 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.985 -26.510 2.205 27.503 hybrid contribution -0.546 0.737 -0.882 1.272 sum 6.439 -25.773 1.323 26.598 Atomic orbital electron populations 1.70170 1.08325 1.27865 1.51474 1.26145 0.95725 1.03972 0.94652 0.85374 0.78048 0.77323 0.79496 1.18727 1.21390 1.18613 1.21704 0.94027 0.91646 1.50815 0.90565 1.18689 0.93737 0.92508 0.94668 1.21634 0.99286 0.90064 1.04916 1.21337 0.87756 0.86804 0.74164 1.90663 1.16745 1.88424 1.51247 1.45754 1.11118 1.04213 1.75528 1.22043 0.95233 0.83335 1.02678 1.20967 0.90688 0.87726 0.91017 0.84453 1.86613 1.37292 1.96086 1.16437 1.20294 0.98854 0.97110 0.93447 1.21461 0.98532 0.95431 0.98221 1.21397 0.95561 0.95129 0.98412 1.21513 1.02629 1.02082 0.91263 1.17932 1.00005 0.94555 0.81894 1.91482 1.88187 1.85990 1.47315 1.21029 1.00378 0.95767 1.00120 0.92865 1.00049 0.99907 0.87609 0.87825 0.74366 0.92439 0.91082 0.76303 0.82675 0.81840 0.83116 0.84058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.82 13.29 21.44 0.28 -59.54 16 2 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 3 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 7 C -0.54 -31.03 9.11 25.60 0.23 -30.79 16 8 H 0.08 3.94 7.74 -2.91 -0.02 3.91 16 9 C 0.04 2.32 4.26 29.85 0.13 2.45 16 10 C -0.12 -4.74 5.64 29.85 0.17 -4.57 16 11 C 0.51 19.36 7.83 87.66 0.69 20.05 16 12 O -0.59 -28.78 15.98 -3.04 -0.05 -28.83 16 13 N -0.71 -18.05 5.45 -463.07 -2.52 -20.57 16 14 C 0.09 1.98 5.32 86.38 0.46 2.43 16 15 C 0.16 2.25 3.30 29.85 0.10 2.35 16 16 H 0.14 1.53 8.05 -2.38 -0.02 1.51 16 17 O -0.56 -8.55 12.88 -148.98 -1.92 -10.47 16 18 C -0.10 -1.40 5.00 -19.87 -0.10 -1.50 16 19 C -0.12 -1.39 9.68 22.27 0.22 -1.18 16 20 C -0.09 -0.93 10.04 22.26 0.22 -0.70 16 21 C -0.16 -2.12 10.03 22.31 0.22 -1.90 16 22 C 0.08 1.33 7.30 22.37 0.16 1.49 16 23 F -0.15 -3.09 17.27 44.97 0.78 -2.31 16 24 C -0.15 -2.52 9.31 22.31 0.21 -2.31 16 25 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 26 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 27 H -0.02 -1.10 8.10 -2.39 -0.02 -1.12 16 28 H 0.11 3.65 8.14 -2.38 -0.02 3.63 16 29 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 30 H 0.42 8.03 8.35 -92.71 -0.77 7.25 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.39 4.42 7.39 -74.06 -0.55 3.87 16 34 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 35 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 36 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 37 H 0.14 1.94 6.61 -2.91 -0.02 1.92 16 Total: -1.00 -79.86 327.39 1.55 -78.31 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -0.22 Total: 11.22 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: 3.17 Total: -14.16 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: -2.24 Total: -80.10 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -1.97 Total: -39.30 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.78 Total: -2.31 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -79.86 1.55 -78.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292281880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.058 kcal (2) G-P(sol) polarization free energy of solvation -79.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds