Wall clock time and date at job start Tue Mar 31 2020 05:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99901 * 2 1 4 4 H 1.48499 * 109.47055 * 269.99891 * 3 2 1 5 5 H 1.48498 * 109.46955 * 29.99442 * 3 2 1 6 6 H 1.48490 * 109.46928 * 149.99562 * 3 2 1 7 7 C 1.37878 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99729 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99920 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47170 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47170 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00130 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99576 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99353 * 180.02562 * 13 11 10 15 15 C 1.53008 * 109.46856 * 180.02562 * 14 13 11 16 16 O 1.42895 * 109.47006 * 64.99442 * 15 14 13 17 17 C 1.35951 * 116.99758 * 179.97438 * 16 15 14 18 18 C 1.38708 * 120.03040 * 0.28885 * 17 16 15 19 19 C 1.38147 * 119.96935 * 180.25012 * 18 17 16 20 20 C 1.38455 * 120.02958 * 359.46222 * 19 18 17 21 21 F 1.35101 * 119.97206 * 180.29906 * 20 19 18 22 22 C 1.38452 * 120.06193 * 0.28172 * 20 19 18 23 23 C 1.38156 * 120.03063 * 359.97438 * 22 20 19 24 24 H 0.96996 * 119.99910 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47205 * 60.00257 * 9 7 2 26 26 H 1.08996 * 109.47200 * 299.99885 * 9 7 2 27 27 H 1.09000 * 109.47223 * 60.00038 * 10 9 7 28 28 H 1.09004 * 109.46887 * 300.00386 * 10 9 7 29 29 H 0.96995 * 120.00605 * 0.02562 * 13 11 10 30 30 H 1.08997 * 109.47700 * 60.00502 * 14 13 11 31 31 H 1.08996 * 109.47102 * 299.99743 * 14 13 11 32 32 H 1.09005 * 109.46539 * 304.99929 * 15 14 13 33 33 H 1.08995 * 109.46786 * 185.00066 * 15 14 13 34 34 H 1.07998 * 120.01328 * 0.02562 * 18 17 16 35 35 H 1.08002 * 119.98838 * 179.74746 * 19 18 17 36 36 H 1.07997 * 119.98751 * 179.97438 * 22 20 19 37 37 H 1.07999 * 120.02057 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 5.5286 -2.6365 0.0035 12 8 6.1349 -1.5862 0.0039 13 7 6.2024 -3.8037 0.0052 14 6 7.6675 -3.8036 0.0069 15 6 8.1775 -5.2462 0.0080 16 8 7.8008 -5.8854 -1.2132 17 6 8.1798 -7.1811 -1.3740 18 6 8.8939 -7.8247 -0.3741 19 6 9.2829 -9.1397 -0.5410 20 6 8.9505 -9.8187 -1.7010 21 9 9.3262 -11.1066 -1.8604 22 6 8.2331 -9.1792 -2.6976 23 6 7.8475 -7.8625 -2.5356 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6800 0.8912 26 1 3.8752 -0.6804 -0.8888 27 1 3.6587 -3.1510 -0.8875 28 1 3.6579 -3.1497 0.8925 29 1 5.7175 -4.6437 0.0052 30 1 8.0298 -3.2892 0.8970 31 1 8.0318 -3.2905 -0.8830 32 1 7.7418 -5.7849 0.8495 33 1 9.2637 -5.2474 0.0988 34 1 9.1489 -7.2968 0.5329 35 1 9.8425 -9.6399 0.2356 36 1 7.9749 -9.7098 -3.6021 37 1 7.2875 -7.3639 -3.3130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292509334.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:57 Heat of formation + Delta-G solvation = -106.055887 kcal Electronic energy + Delta-G solvation = -20370.687672 eV Core-core repulsion = 16834.554045 eV Total energy + Delta-G solvation = -3536.133627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.17616 -40.57845 -39.26099 -37.71693 -34.75997 -33.47304 -31.77016 -31.40957 -30.38825 -29.07684 -26.14785 -24.19460 -23.01790 -22.14249 -21.17446 -19.74891 -18.84563 -17.78195 -17.34552 -16.95952 -16.59876 -15.92146 -15.85974 -15.49595 -15.21137 -15.05553 -14.43123 -14.09766 -14.04211 -13.73732 -13.30572 -13.16451 -12.96716 -12.67968 -12.56267 -12.24925 -12.00703 -11.41890 -11.30883 -11.20084 -10.95429 -10.16414 -10.04509 -9.78419 -9.64594 -9.27136 -9.16832 -8.95077 -8.52384 -8.50218 -6.02534 -4.01254 0.70338 0.78807 2.67378 3.10545 3.13278 3.38097 3.39017 3.44886 3.55521 3.89980 4.18601 4.31111 4.45479 4.51310 4.62406 4.66024 4.80035 4.88811 5.07098 5.32131 5.32912 5.40727 5.48422 5.66434 5.68324 5.72527 5.78441 6.08263 6.10544 6.25812 6.52938 6.69867 6.91533 7.36801 7.43839 7.72109 7.79848 8.50128 8.62855 9.00619 9.60482 11.10300 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036989 B = 0.002485 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.793522 B =11262.671705 C =11728.955697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.122 4.122 11 C 0.511 3.489 12 O -0.541 6.541 13 N -0.740 5.740 14 C 0.122 3.878 15 C 0.046 3.954 16 O -0.306 6.306 17 C 0.125 3.875 18 C -0.183 4.183 19 C -0.113 4.113 20 C 0.056 3.944 21 F -0.142 7.142 22 C -0.112 4.112 23 C -0.122 4.122 24 H 0.263 0.737 25 H 0.023 0.977 26 H 0.019 0.981 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.402 0.598 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.769 -19.961 -1.396 28.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.162 4.162 11 C 0.300 3.700 12 O -0.418 6.418 13 N -0.395 5.395 14 C -0.002 4.002 15 C -0.029 4.029 16 O -0.219 6.219 17 C 0.079 3.921 18 C -0.201 4.201 19 C -0.131 4.131 20 C 0.036 3.964 21 F -0.121 7.121 22 C -0.131 4.131 23 C -0.141 4.141 24 H 0.073 0.927 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.236 0.764 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.160 0.840 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 20.968 -18.973 -1.520 28.318 hybrid contribution 0.366 0.099 0.172 0.416 sum 21.333 -18.874 -1.347 28.516 Atomic orbital electron populations 1.69914 1.06293 1.26963 1.51095 1.24982 0.94718 0.99251 0.94353 0.86786 0.80592 0.83371 0.78746 1.20240 1.21463 1.18543 1.21118 0.89292 0.94564 1.51295 0.90930 1.19370 0.96406 0.90227 0.97650 1.21667 0.87860 1.03274 1.03396 1.21548 0.91649 0.82651 0.74178 1.90653 1.70837 1.31473 1.48794 1.46117 1.05988 1.09570 1.77835 1.21306 0.82151 0.93178 1.03578 1.23202 1.00602 0.93529 0.85567 1.86187 1.73952 1.22053 1.39711 1.19050 0.94583 0.84119 0.94365 1.21146 1.03203 0.95628 1.00172 1.20943 1.00718 0.94620 0.96861 1.17596 1.02418 0.79797 0.96564 1.91495 1.89871 1.34837 1.95914 1.20995 0.98330 0.94645 0.99123 1.20359 1.03073 0.93536 0.97110 0.92724 0.95847 0.96266 0.89539 0.89590 0.76420 0.89421 0.90513 0.90933 0.90274 0.84390 0.84480 0.83985 0.83878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 22.61 27.47 -169.99 -4.67 17.94 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.26 -6.68 6.54 56.52 0.37 -6.31 16 7 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 8 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 9 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 10 C -0.12 -2.35 5.64 -27.88 -0.16 -2.50 16 11 C 0.51 9.09 7.83 -10.99 -0.09 9.01 16 12 O -0.54 -11.78 15.98 5.56 0.09 -11.69 16 13 N -0.74 -9.39 5.50 -60.29 -0.33 -9.73 16 14 C 0.12 1.25 6.06 -4.03 -0.02 1.23 16 15 C 0.05 0.33 4.87 37.16 0.18 0.51 16 16 O -0.31 -2.81 10.08 -19.58 -0.20 -3.01 16 17 C 0.12 1.06 6.69 -39.23 -0.26 0.80 16 18 C -0.18 -1.29 9.04 -39.44 -0.36 -1.65 16 19 C -0.11 -0.81 10.02 -39.53 -0.40 -1.21 16 20 C 0.06 0.46 7.30 -39.42 -0.29 0.18 16 21 F -0.14 -1.32 17.27 2.25 0.04 -1.28 16 22 C -0.11 -0.85 10.02 -39.53 -0.40 -1.24 16 23 C -0.12 -0.98 9.99 -39.44 -0.39 -1.37 16 24 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 25 H 0.02 0.61 7.16 -51.93 -0.37 0.23 16 26 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 27 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 28 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.40 4.17 8.47 -40.82 -0.35 3.83 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.42 7.65 -51.93 -0.40 0.02 16 33 H 0.08 0.41 7.67 -51.93 -0.40 0.01 16 34 H 0.14 0.69 6.30 -52.49 -0.33 0.36 16 35 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 324.74 15.07 4.89 4.89 Total: -1.00 -34.83 324.74 -6.89 -41.72 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -4.78 Total: -1.79 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -2.70 Total: -9.76 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.44 Total: -37.02 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.11 Total: -14.70 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.67 Total: 17.94 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.83 -6.89 -41.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292509334.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.337 kcal (2) G-P(sol) polarization free energy of solvation -34.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds