Wall clock time and date at job start Tue Mar 31 2020 05:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99901 * 2 1 4 4 H 1.48499 * 109.47055 * 269.99891 * 3 2 1 5 5 H 1.48498 * 109.46955 * 29.99442 * 3 2 1 6 6 H 1.48490 * 109.46928 * 149.99562 * 3 2 1 7 7 C 1.37878 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99729 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99920 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47170 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47170 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00130 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99576 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99353 * 180.02562 * 13 11 10 15 15 C 1.53008 * 109.46856 * 180.02562 * 14 13 11 16 16 O 1.42895 * 109.47006 * 64.99442 * 15 14 13 17 17 C 1.35951 * 116.99758 * 179.97438 * 16 15 14 18 18 C 1.38708 * 120.03040 * 0.28885 * 17 16 15 19 19 C 1.38147 * 119.96935 * 180.25012 * 18 17 16 20 20 C 1.38455 * 120.02958 * 359.46222 * 19 18 17 21 21 F 1.35101 * 119.97206 * 180.29906 * 20 19 18 22 22 C 1.38452 * 120.06193 * 0.28172 * 20 19 18 23 23 C 1.38156 * 120.03063 * 359.97438 * 22 20 19 24 24 H 0.96996 * 119.99910 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47205 * 60.00257 * 9 7 2 26 26 H 1.08996 * 109.47200 * 299.99885 * 9 7 2 27 27 H 1.09000 * 109.47223 * 60.00038 * 10 9 7 28 28 H 1.09004 * 109.46887 * 300.00386 * 10 9 7 29 29 H 0.96995 * 120.00605 * 0.02562 * 13 11 10 30 30 H 1.08997 * 109.47700 * 60.00502 * 14 13 11 31 31 H 1.08996 * 109.47102 * 299.99743 * 14 13 11 32 32 H 1.09005 * 109.46539 * 304.99929 * 15 14 13 33 33 H 1.08995 * 109.46786 * 185.00066 * 15 14 13 34 34 H 1.07998 * 120.01328 * 0.02562 * 18 17 16 35 35 H 1.08002 * 119.98838 * 179.74746 * 19 18 17 36 36 H 1.07997 * 119.98751 * 179.97438 * 22 20 19 37 37 H 1.07999 * 120.02057 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 5.5286 -2.6365 0.0035 12 8 6.1349 -1.5862 0.0039 13 7 6.2024 -3.8037 0.0052 14 6 7.6675 -3.8036 0.0069 15 6 8.1775 -5.2462 0.0080 16 8 7.8008 -5.8854 -1.2132 17 6 8.1798 -7.1811 -1.3740 18 6 8.8939 -7.8247 -0.3741 19 6 9.2829 -9.1397 -0.5410 20 6 8.9505 -9.8187 -1.7010 21 9 9.3262 -11.1066 -1.8604 22 6 8.2331 -9.1792 -2.6976 23 6 7.8475 -7.8625 -2.5356 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6800 0.8912 26 1 3.8752 -0.6804 -0.8888 27 1 3.6587 -3.1510 -0.8875 28 1 3.6579 -3.1497 0.8925 29 1 5.7175 -4.6437 0.0052 30 1 8.0298 -3.2892 0.8970 31 1 8.0318 -3.2905 -0.8830 32 1 7.7418 -5.7849 0.8495 33 1 9.2637 -5.2474 0.0988 34 1 9.1489 -7.2968 0.5329 35 1 9.8425 -9.6399 0.2356 36 1 7.9749 -9.7098 -3.6021 37 1 7.2875 -7.3639 -3.3130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292509334.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:57 Heat of formation + Delta-G solvation = -129.689207 kcal Electronic energy + Delta-G solvation = -20371.712490 eV Core-core repulsion = 16834.554045 eV Total energy + Delta-G solvation = -3537.158444 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.81877 -41.21871 -40.55390 -38.35982 -35.91033 -35.47480 -33.35808 -32.29538 -31.27547 -29.83386 -27.88180 -25.00324 -23.70528 -23.20591 -22.44705 -21.23213 -19.41506 -19.21595 -18.39380 -17.81588 -17.61360 -17.13972 -16.62880 -16.59489 -16.30287 -16.10424 -15.71350 -15.21563 -14.88585 -14.72589 -14.58470 -14.45516 -14.07039 -13.69731 -13.51997 -13.38586 -13.25046 -12.88572 -12.70656 -12.09215 -11.96080 -11.86890 -11.75902 -11.75014 -11.39156 -10.77536 -10.76299 -10.17918 -10.08676 -9.11566 -8.30844 -6.33817 0.17043 0.20266 1.34292 1.35940 1.51061 1.70187 2.07935 2.28918 2.35798 2.57604 3.04805 3.33721 3.62293 3.79781 3.86103 4.03625 4.10013 4.13742 4.30328 4.36484 4.42100 4.46006 4.51968 4.74269 4.81459 4.91864 5.02641 5.13071 5.16626 5.22589 5.33555 5.46110 5.47985 5.62201 5.70430 6.24228 6.34955 6.57615 6.72830 7.31245 7.31733 8.84852 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036989 B = 0.002485 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.793522 B =11262.671705 C =11728.955697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.012 3.988 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.260 1.260 7 C -0.529 4.529 8 H 0.049 0.951 9 C 0.005 3.995 10 C -0.118 4.118 11 C 0.515 3.485 12 O -0.586 6.586 13 N -0.719 5.719 14 C 0.118 3.882 15 C 0.050 3.950 16 O -0.324 6.324 17 C 0.114 3.886 18 C -0.180 4.180 19 C -0.113 4.113 20 C 0.036 3.964 21 F -0.152 7.152 22 C -0.115 4.115 23 C -0.135 4.135 24 H 0.267 0.733 25 H 0.011 0.989 26 H 0.008 0.992 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.415 0.585 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.163 0.837 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.582 -20.676 -0.788 30.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.764 3.236 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.184 1.184 7 C -0.567 4.567 8 H 0.068 0.932 9 C -0.033 4.033 10 C -0.158 4.158 11 C 0.304 3.696 12 O -0.466 6.466 13 N -0.372 5.372 14 C -0.005 4.005 15 C -0.024 4.024 16 O -0.238 6.238 17 C 0.068 3.932 18 C -0.198 4.198 19 C -0.132 4.132 20 C 0.017 3.983 21 F -0.131 7.131 22 C -0.133 4.133 23 C -0.153 4.153 24 H 0.076 0.924 25 H 0.030 0.970 26 H 0.026 0.974 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.252 0.748 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.180 0.820 35 H 0.173 0.827 36 H 0.173 0.827 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 22.795 -19.752 -0.913 30.176 hybrid contribution -0.208 0.211 -0.027 0.298 sum 22.587 -19.541 -0.941 29.881 Atomic orbital electron populations 1.70029 1.07811 1.28099 1.52557 1.25835 0.95523 1.02952 0.94293 0.85803 0.79258 0.79379 0.79120 1.19446 1.20375 1.18408 1.21447 0.91330 0.93684 1.50259 0.93238 1.19224 0.93856 0.93866 0.96392 1.21495 0.89511 0.99821 1.04962 1.21123 0.90950 0.83363 0.74211 1.90639 1.71345 1.33267 1.51394 1.45893 1.07371 1.08550 1.75407 1.21489 0.80040 0.95631 1.03355 1.23260 1.02202 0.91395 0.85567 1.86146 1.74434 1.22520 1.40719 1.19203 0.95128 0.83952 0.94906 1.21387 1.02325 0.95493 1.00597 1.21204 1.00384 0.94787 0.96838 1.17873 1.03288 0.79688 0.97494 1.91469 1.90065 1.35485 1.96035 1.21158 0.97979 0.94608 0.99572 1.20507 1.03495 0.93799 0.97514 0.92392 0.97022 0.97386 0.88240 0.87881 0.74789 0.88619 0.91900 0.88836 0.87590 0.81955 0.82660 0.82706 0.83547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.30 13.96 21.45 0.30 -59.00 16 2 C 0.01 0.69 5.47 84.65 0.46 1.15 16 3 Si 0.94 46.78 27.47 68.60 1.88 48.66 16 4 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.26 -12.79 6.54 99.48 0.65 -12.14 16 7 C -0.53 -30.59 9.66 25.60 0.25 -30.34 16 8 H 0.05 3.01 7.99 -2.91 -0.02 2.99 16 9 C 0.00 0.23 3.33 29.85 0.10 0.33 16 10 C -0.12 -4.40 5.64 29.85 0.17 -4.24 16 11 C 0.52 17.61 7.83 87.66 0.69 18.30 16 12 O -0.59 -25.09 15.98 -3.01 -0.05 -25.14 16 13 N -0.72 -16.58 5.50 -463.05 -2.55 -19.13 16 14 C 0.12 2.13 6.06 86.38 0.52 2.66 16 15 C 0.05 0.54 4.87 71.98 0.35 0.90 16 16 O -0.32 -5.16 10.08 -92.99 -0.94 -6.09 16 17 C 0.11 1.68 6.69 22.50 0.15 1.83 16 18 C -0.18 -2.01 9.04 22.36 0.20 -1.81 16 19 C -0.11 -1.39 10.02 22.30 0.22 -1.16 16 20 C 0.04 0.55 7.30 22.37 0.16 0.72 16 21 F -0.15 -2.69 17.27 44.97 0.78 -1.91 16 22 C -0.11 -1.61 10.02 22.30 0.22 -1.39 16 23 C -0.13 -1.99 9.99 22.36 0.22 -1.77 16 24 H 0.27 15.67 8.31 -92.71 -0.77 14.89 16 25 H 0.01 0.59 7.16 -2.38 -0.02 0.58 16 26 H 0.01 0.40 7.53 -2.39 -0.02 0.38 16 27 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 28 H 0.10 3.46 8.14 -2.38 -0.02 3.44 16 29 H 0.42 7.43 8.47 -92.71 -0.79 6.65 16 30 H 0.10 1.64 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 0.66 7.65 -2.38 -0.02 0.64 16 33 H 0.11 0.64 7.67 -2.39 -0.02 0.62 16 34 H 0.16 0.93 6.30 -2.91 -0.02 0.91 16 35 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 37 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -75.62 324.74 3.40 -72.23 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 0.25 Total: 5.22 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 3.72 Total: -14.84 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -2.25 Total: -78.13 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.99 Total: -31.23 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.78 Total: -1.91 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.88 Total: 48.66 kcal Total: -75.62 3.40 -72.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292509334.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.462 kcal (2) G-P(sol) polarization free energy of solvation -75.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds