Wall clock time and date at job start Tue Mar 31 2020 05:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99800 * 2 1 4 4 H 1.48504 * 109.47003 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47277 * 299.99152 * 3 2 1 6 6 H 1.48503 * 109.47504 * 59.99849 * 3 2 1 7 7 C 1.37878 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00221 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00029 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47065 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99787 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00137 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00267 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47195 * 179.97438 * 14 13 11 16 16 O 1.42898 * 109.47319 * 64.99855 * 15 14 13 17 17 C 1.35897 * 117.00481 * 180.02562 * 16 15 14 18 18 C 1.38774 * 120.03441 * 359.72088 * 17 16 15 19 19 C 1.38138 * 119.99122 * 179.74971 * 18 17 16 20 20 C 1.38257 * 120.07872 * 0.53010 * 19 18 17 21 21 C 1.38476 * 120.08328 * 359.74048 * 20 19 18 22 22 F 1.35105 * 119.99874 * 179.97438 * 21 20 19 23 23 C 1.38392 * 120.00736 * 359.97438 * 21 20 19 24 24 H 0.96996 * 120.00271 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46697 * 59.99715 * 9 7 2 26 26 H 1.09004 * 109.47058 * 300.00332 * 9 7 2 27 27 H 1.08993 * 109.47322 * 60.00171 * 10 9 7 28 28 H 1.09004 * 109.46881 * 299.99809 * 10 9 7 29 29 H 0.96999 * 119.99691 * 359.97438 * 13 11 10 30 30 H 1.09001 * 109.47117 * 59.98914 * 14 13 11 31 31 H 1.09004 * 109.46581 * 299.99567 * 14 13 11 32 32 H 1.09002 * 109.47153 * 304.99547 * 15 14 13 33 33 H 1.09001 * 109.46832 * 184.99738 * 15 14 13 34 34 H 1.07996 * 120.00577 * 0.02562 * 18 17 16 35 35 H 1.07993 * 119.96226 * 180.27412 * 19 18 17 36 36 H 1.07999 * 119.95967 * 179.77480 * 20 19 18 37 37 H 1.07997 * 120.03638 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4918 -4.9672 0.0012 12 8 0.2790 -4.9672 0.0003 13 7 2.1657 -6.1344 0.0026 14 6 1.4332 -7.4031 0.0026 15 6 2.4275 -8.5660 0.0038 16 8 3.1689 -8.5576 1.2253 17 6 4.1019 -9.5323 1.3876 18 6 4.2954 -10.4810 0.3934 19 6 5.2476 -11.4683 0.5570 20 6 6.0010 -11.5193 1.7152 21 6 5.8067 -10.5775 2.7117 22 9 6.5435 -10.6293 3.8429 23 6 4.8578 -9.5834 2.5489 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5570 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8712 -3.6039 0.8922 28 1 2.8726 -3.6047 -0.8878 29 1 3.1357 -6.1344 0.0037 30 1 0.8074 -7.4614 -0.8880 31 1 0.8056 -7.4603 0.8920 32 1 3.1122 -8.4595 -0.8377 33 1 1.8855 -9.5075 -0.0858 34 1 3.7048 -10.4448 -0.5100 35 1 5.4009 -12.2037 -0.2188 36 1 6.7424 -12.2941 1.8426 37 1 4.7061 -8.8485 3.3256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292612978.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:03 Heat of formation + Delta-G solvation = -108.730598 kcal Electronic energy + Delta-G solvation = -20378.182867 eV Core-core repulsion = 16841.933256 eV Total energy + Delta-G solvation = -3536.249611 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.27165 -40.55819 -39.12536 -37.70999 -34.67745 -33.43499 -31.55900 -31.05369 -30.29909 -29.26375 -25.77531 -23.95533 -23.25204 -22.12111 -21.32830 -19.71101 -19.03101 -17.15709 -16.85610 -16.64911 -16.55101 -16.37624 -15.91794 -15.63920 -15.26360 -15.02665 -14.52283 -14.37220 -14.14462 -13.48679 -13.17088 -12.95646 -12.73873 -12.40863 -12.22847 -12.12052 -11.89385 -11.42633 -11.28532 -11.13912 -10.93498 -10.56851 -9.94935 -9.66223 -9.31213 -9.17843 -9.00834 -8.84325 -8.72617 -8.31308 -5.95253 -3.99455 0.70031 0.86506 2.60582 3.16145 3.24985 3.33419 3.40079 3.43285 3.49965 3.94193 4.24389 4.48440 4.50683 4.53404 4.59966 4.68657 4.81758 4.91400 4.96315 5.39812 5.41544 5.50783 5.54399 5.65794 5.77485 5.81506 5.88114 6.23984 6.26332 6.28480 6.64296 6.90599 6.92214 7.75776 7.85407 7.87470 8.08226 8.39821 8.76368 9.09371 9.64104 11.15790 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025755 B = 0.002573 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.913768 B =10881.066729 C =11624.239372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.511 3.489 12 O -0.535 6.535 13 N -0.743 5.743 14 C 0.122 3.878 15 C 0.047 3.953 16 O -0.304 6.304 17 C 0.164 3.836 18 C -0.221 4.221 19 C -0.050 4.050 20 C -0.196 4.196 21 C 0.139 3.861 22 F -0.134 7.134 23 C -0.190 4.190 24 H 0.260 0.740 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.400 0.600 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.523 -25.999 0.368 28.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.299 3.701 12 O -0.411 6.411 13 N -0.398 5.398 14 C -0.002 4.002 15 C -0.028 4.028 16 O -0.217 6.217 17 C 0.117 3.883 18 C -0.240 4.240 19 C -0.068 4.068 20 C -0.215 4.215 21 C 0.120 3.880 22 F -0.113 7.113 23 C -0.210 4.210 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.234 0.766 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 10.420 -25.711 0.537 27.748 hybrid contribution 1.040 0.708 0.032 1.259 sum 11.461 -25.004 0.569 27.511 Atomic orbital electron populations 1.70005 1.06059 1.26466 1.50345 1.25031 0.94830 0.99254 0.95336 0.86535 0.80018 0.83828 0.77573 1.19742 1.21029 1.21017 1.21265 0.92975 0.91008 1.51183 0.92548 1.18907 0.93190 0.89405 0.98621 1.21864 1.00721 0.91849 1.02540 1.21579 0.88628 0.85632 0.74251 1.90670 1.14471 1.87643 1.48275 1.46159 1.10185 1.05255 1.78208 1.21300 0.93502 0.81840 1.03602 1.23235 0.94269 0.99984 0.85286 1.86175 1.47941 1.47681 1.39930 1.18628 0.88682 0.87779 0.93188 1.21367 1.03798 0.98233 1.00617 1.20791 0.93028 0.96755 0.96273 1.21060 1.04449 1.01286 0.94658 1.17306 0.91548 0.95917 0.83263 1.91529 1.75025 1.95948 1.48771 1.20318 0.99245 1.02134 0.99276 0.93011 0.95825 0.95810 0.90164 0.90248 0.76626 0.89385 0.90532 0.90851 0.90179 0.84659 0.84655 0.84631 0.83709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.59 13.29 55.43 0.74 -26.85 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.53 -15.02 9.11 -34.44 -0.31 -15.34 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 10 C -0.13 -2.64 5.64 -27.88 -0.16 -2.80 16 11 C 0.51 9.75 7.83 -10.98 -0.09 9.66 16 12 O -0.54 -12.53 15.98 5.56 0.09 -12.44 16 13 N -0.74 -10.14 5.50 -60.29 -0.33 -10.47 16 14 C 0.12 1.35 6.06 -4.04 -0.02 1.32 16 15 C 0.05 0.37 4.87 37.16 0.18 0.55 16 16 O -0.30 -3.03 10.08 -19.42 -0.20 -3.23 16 17 C 0.16 1.50 6.68 -39.23 -0.26 1.24 16 18 C -0.22 -1.57 9.04 -39.42 -0.36 -1.93 16 19 C -0.05 -0.32 10.04 -39.61 -0.40 -0.71 16 20 C -0.20 -1.43 10.02 -39.49 -0.40 -1.82 16 21 C 0.14 1.27 7.30 -39.44 -0.29 0.99 16 22 F -0.13 -1.34 17.27 2.25 0.04 -1.30 16 23 C -0.19 -1.83 9.97 -39.37 -0.39 -2.22 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.40 4.49 8.47 -40.82 -0.35 4.14 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.45 7.67 -51.93 -0.40 0.06 16 33 H 0.08 0.45 7.65 -51.93 -0.40 0.05 16 34 H 0.14 0.69 6.30 -52.49 -0.33 0.35 16 35 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 36 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 37 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 328.34 15.07 4.95 4.95 Total: -1.00 -34.95 328.34 -7.26 -42.21 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -4.81 Total: -1.00 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -2.71 Total: -8.63 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.40 Total: -37.32 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.11 Total: -15.67 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.95 -7.26 -42.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292612978.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.521 kcal (2) G-P(sol) polarization free energy of solvation -34.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds