Wall clock time and date at job start Tue Mar 31 2020 05:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99800 * 2 1 4 4 H 1.48504 * 109.47003 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47277 * 299.99152 * 3 2 1 6 6 H 1.48503 * 109.47504 * 59.99849 * 3 2 1 7 7 C 1.37878 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00221 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00029 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47065 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99787 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00137 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00267 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47195 * 179.97438 * 14 13 11 16 16 O 1.42898 * 109.47319 * 64.99855 * 15 14 13 17 17 C 1.35897 * 117.00481 * 180.02562 * 16 15 14 18 18 C 1.38774 * 120.03441 * 359.72088 * 17 16 15 19 19 C 1.38138 * 119.99122 * 179.74971 * 18 17 16 20 20 C 1.38257 * 120.07872 * 0.53010 * 19 18 17 21 21 C 1.38476 * 120.08328 * 359.74048 * 20 19 18 22 22 F 1.35105 * 119.99874 * 179.97438 * 21 20 19 23 23 C 1.38392 * 120.00736 * 359.97438 * 21 20 19 24 24 H 0.96996 * 120.00271 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46697 * 59.99715 * 9 7 2 26 26 H 1.09004 * 109.47058 * 300.00332 * 9 7 2 27 27 H 1.08993 * 109.47322 * 60.00171 * 10 9 7 28 28 H 1.09004 * 109.46881 * 299.99809 * 10 9 7 29 29 H 0.96999 * 119.99691 * 359.97438 * 13 11 10 30 30 H 1.09001 * 109.47117 * 59.98914 * 14 13 11 31 31 H 1.09004 * 109.46581 * 299.99567 * 14 13 11 32 32 H 1.09002 * 109.47153 * 304.99547 * 15 14 13 33 33 H 1.09001 * 109.46832 * 184.99738 * 15 14 13 34 34 H 1.07996 * 120.00577 * 0.02562 * 18 17 16 35 35 H 1.07993 * 119.96226 * 180.27412 * 19 18 17 36 36 H 1.07999 * 119.95967 * 179.77480 * 20 19 18 37 37 H 1.07997 * 120.03638 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4918 -4.9672 0.0012 12 8 0.2790 -4.9672 0.0003 13 7 2.1657 -6.1344 0.0026 14 6 1.4332 -7.4031 0.0026 15 6 2.4275 -8.5660 0.0038 16 8 3.1689 -8.5576 1.2253 17 6 4.1019 -9.5323 1.3876 18 6 4.2954 -10.4810 0.3934 19 6 5.2476 -11.4683 0.5570 20 6 6.0010 -11.5193 1.7152 21 6 5.8067 -10.5775 2.7117 22 9 6.5435 -10.6293 3.8429 23 6 4.8578 -9.5834 2.5489 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5570 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8712 -3.6039 0.8922 28 1 2.8726 -3.6047 -0.8878 29 1 3.1357 -6.1344 0.0037 30 1 0.8074 -7.4614 -0.8880 31 1 0.8056 -7.4603 0.8920 32 1 3.1122 -8.4595 -0.8377 33 1 1.8855 -9.5075 -0.0858 34 1 3.7048 -10.4448 -0.5100 35 1 5.4009 -12.2037 -0.2188 36 1 6.7424 -12.2941 1.8426 37 1 4.7061 -8.8485 3.3256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292612978.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:01 Heat of formation + Delta-G solvation = -132.711980 kcal Electronic energy + Delta-G solvation = -20379.222778 eV Core-core repulsion = 16841.933256 eV Total energy + Delta-G solvation = -3537.289522 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -49.97030 -41.23815 -40.54210 -38.38552 -35.92983 -35.50533 -33.10837 -32.06997 -31.05865 -30.16745 -27.64863 -24.94530 -23.87109 -23.49683 -22.42748 -21.25301 -19.65974 -18.84494 -17.81135 -17.56178 -17.27869 -17.21853 -16.96464 -16.70839 -16.52530 -16.44935 -16.09143 -15.32669 -14.80966 -14.69029 -14.58961 -14.18275 -13.84939 -13.56165 -13.35142 -13.20558 -13.04789 -12.84307 -12.65861 -12.44152 -12.01295 -11.92647 -11.89724 -11.63576 -11.28412 -10.73639 -10.58001 -10.09323 -9.91168 -9.31949 -8.18228 -6.32088 0.11329 0.28891 1.42164 1.43597 1.56916 1.71505 1.96983 2.26483 2.45170 2.59483 3.14804 3.34199 3.64251 3.86330 3.99644 4.05338 4.08683 4.11873 4.24840 4.32846 4.43100 4.51583 4.55314 4.66159 4.80566 5.01157 5.09131 5.10111 5.22617 5.34687 5.43485 5.51744 5.63855 5.71767 5.85847 6.18054 6.32031 6.58503 6.86692 7.33831 7.38342 8.94709 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025755 B = 0.002573 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.913768 B =10881.066729 C =11624.239372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.974 3.026 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.075 0.925 9 C 0.041 3.959 10 C -0.121 4.121 11 C 0.512 3.488 12 O -0.589 6.589 13 N -0.718 5.718 14 C 0.117 3.883 15 C 0.054 3.946 16 O -0.327 6.327 17 C 0.149 3.851 18 C -0.216 4.216 19 C -0.045 4.045 20 C -0.195 4.195 21 C 0.118 3.882 22 F -0.146 7.146 23 C -0.212 4.212 24 H 0.263 0.737 25 H -0.015 1.015 26 H -0.019 1.019 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.415 0.585 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.162 0.838 35 H 0.170 0.830 36 H 0.154 0.846 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.977 -27.421 -0.991 30.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.177 1.177 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.093 0.907 9 C 0.004 3.996 10 C -0.160 4.160 11 C 0.300 3.700 12 O -0.469 6.469 13 N -0.372 5.372 14 C -0.007 4.007 15 C -0.021 4.021 16 O -0.241 6.241 17 C 0.103 3.897 18 C -0.234 4.234 19 C -0.062 4.062 20 C -0.213 4.213 21 C 0.099 3.901 22 F -0.125 7.125 23 C -0.231 4.231 24 H 0.072 0.928 25 H 0.003 0.997 26 H -0.001 1.001 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.252 0.748 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.127 0.873 34 H 0.179 0.821 35 H 0.188 0.812 36 H 0.172 0.828 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 12.942 -27.187 -0.821 30.121 hybrid contribution 0.268 1.048 0.452 1.172 sum 13.210 -26.139 -0.368 29.290 Atomic orbital electron populations 1.70178 1.08290 1.27751 1.51572 1.26144 0.95748 1.03967 0.94678 0.85268 0.79280 0.78084 0.77573 1.17663 1.20500 1.20690 1.21751 0.93980 0.91661 1.50615 0.90685 1.18697 0.93729 0.92471 0.94738 1.21634 0.99338 0.90321 1.04743 1.21277 0.87772 0.86793 0.74164 1.90655 1.16590 1.88415 1.51219 1.45887 1.10981 1.04756 1.75608 1.21493 0.94416 0.81570 1.03200 1.23280 0.94147 0.99337 0.85319 1.86123 1.48512 1.48429 1.41053 1.18731 0.88808 0.88446 0.93682 1.21696 1.03771 0.97279 1.00678 1.21222 0.91800 0.96838 0.96387 1.21375 1.04717 1.00882 0.94362 1.17560 0.92017 0.96871 0.83691 1.91492 1.75355 1.96089 1.49547 1.20380 1.00321 1.02593 0.99815 0.92843 0.99705 1.00070 0.88184 0.87609 0.74780 0.88621 0.92300 0.88413 0.87303 0.82056 0.81241 0.82834 0.84891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.95 13.29 21.45 0.28 -59.67 16 2 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 3 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 4 H -0.25 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.54 -31.18 9.11 25.60 0.23 -30.94 16 8 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 9 C 0.04 2.32 4.26 29.85 0.13 2.45 16 10 C -0.12 -4.88 5.64 29.85 0.17 -4.71 16 11 C 0.51 19.63 7.83 87.66 0.69 20.31 16 12 O -0.59 -28.67 15.98 -3.01 -0.05 -28.72 16 13 N -0.72 -18.61 5.50 -463.06 -2.55 -21.16 16 14 C 0.12 2.42 6.06 86.38 0.52 2.94 16 15 C 0.05 0.66 4.87 71.98 0.35 1.01 16 16 O -0.33 -5.96 10.08 -92.39 -0.93 -6.89 16 17 C 0.15 2.48 6.68 22.50 0.15 2.64 16 18 C -0.22 -2.30 9.04 22.37 0.20 -2.10 16 19 C -0.04 -0.39 10.04 22.25 0.22 -0.17 16 20 C -0.19 -2.40 10.02 22.33 0.22 -2.17 16 21 C 0.12 2.10 7.30 22.36 0.16 2.26 16 22 F -0.15 -2.97 17.27 44.97 0.78 -2.19 16 23 C -0.21 -4.05 9.97 22.41 0.22 -3.83 16 24 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 25 H -0.02 -0.98 8.10 -2.39 -0.02 -1.00 16 26 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 27 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 28 H 0.11 3.71 8.14 -2.38 -0.02 3.69 16 29 H 0.42 8.30 8.47 -92.71 -0.79 7.52 16 30 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 32 H 0.10 0.78 7.67 -2.39 -0.02 0.76 16 33 H 0.11 0.78 7.65 -2.39 -0.02 0.76 16 34 H 0.16 0.82 6.30 -2.91 -0.02 0.80 16 35 H 0.17 0.33 8.06 -2.91 -0.02 0.31 16 36 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 37 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -80.38 328.34 3.60 -76.78 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 0.30 Total: 7.47 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 3.74 Total: -12.32 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -2.26 Total: -80.83 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -0.98 Total: -35.61 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.78 Total: -2.19 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -80.38 3.60 -76.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292612978.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.929 kcal (2) G-P(sol) polarization free energy of solvation -80.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds