Wall clock time and date at job start Tue Mar 31 2020 05:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33384 * 125.20740 * 2 1 4 4 C 1.38420 * 114.92623 * 180.02562 * 3 2 1 5 5 C 1.50696 * 122.54398 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47437 * 219.97989 * 5 4 3 7 7 C 1.53005 * 109.47143 * 99.97767 * 5 4 3 8 8 N 1.46502 * 109.46872 * 339.98328 * 5 4 3 9 9 C 1.34777 * 119.99870 * 204.99655 * 8 5 4 10 10 O 1.21290 * 119.99982 * 359.97438 * 9 8 5 11 11 C 1.50700 * 120.00083 * 179.97438 * 9 8 5 12 12 C 1.53003 * 109.47181 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47181 * 180.02562 * 12 11 9 14 14 H 1.07994 * 120.00073 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99914 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00269 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00064 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47252 * 89.99985 * 17 15 13 19 19 H 1.48501 * 109.47241 * 210.00518 * 17 15 13 20 20 H 1.48505 * 109.47146 * 330.00280 * 17 15 13 21 21 C 1.33392 * 114.91632 * 0.02562 * 4 3 2 22 22 C 1.50706 * 125.20035 * 179.97438 * 21 4 3 23 23 S 1.75886 * 109.59635 * 0.24519 * 21 4 3 24 24 H 1.09004 * 109.47235 * 89.99741 * 1 2 3 25 25 H 1.09002 * 109.47216 * 209.99824 * 1 2 3 26 26 H 1.08999 * 109.46969 * 329.99579 * 1 2 3 27 27 H 1.08004 * 122.53675 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.47087 * 180.02562 * 7 5 4 29 29 H 1.09005 * 109.46828 * 300.00295 * 7 5 4 30 30 H 1.08992 * 109.46845 * 60.00097 * 7 5 4 31 31 H 0.97003 * 120.00239 * 24.99251 * 8 5 4 32 32 H 1.08996 * 109.47214 * 300.00002 * 11 9 8 33 33 H 1.08998 * 109.47152 * 60.00685 * 11 9 8 34 34 H 1.09002 * 109.47168 * 300.00527 * 12 11 9 35 35 H 1.09004 * 109.46675 * 59.99853 * 12 11 9 36 36 H 0.97001 * 120.00481 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.46953 * 90.00154 * 22 21 4 38 38 H 1.09000 * 109.47318 * 209.99752 * 22 21 4 39 39 H 1.09000 * 109.47161 * 330.00382 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0898 0.0000 4 6 3.6380 0.8428 -0.0006 5 6 4.6624 1.9480 -0.0001 6 1 5.4867 1.6797 -0.6608 7 6 5.1928 2.1512 1.4206 8 7 4.0423 3.1887 -0.4718 9 6 4.8018 4.1512 -1.0316 10 8 5.9987 3.9903 -1.1443 11 6 4.1639 5.4271 -1.5174 12 6 5.2391 6.3430 -2.1057 13 6 4.6013 7.6193 -2.5909 14 1 3.5358 7.7630 -2.4895 15 6 5.3783 8.6039 -3.1635 16 7 6.6760 8.4291 -3.2866 17 14 4.5879 10.1861 -3.7643 18 1 4.5757 11.1825 -2.6633 19 1 5.3649 10.7237 -4.9099 20 1 3.1945 9.9100 -4.1974 21 6 3.9750 -0.4478 -0.0016 22 6 5.3861 -0.9772 -0.0029 23 16 2.5209 -1.4373 -0.0089 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.8670 2.0894 0.0004 28 1 5.9334 2.9510 1.4211 29 1 4.3684 2.4195 2.0813 30 1 5.6541 1.2282 1.7716 31 1 3.0851 3.3175 -0.3814 32 1 3.4254 5.1949 -2.2847 33 1 3.6751 5.9297 -0.6828 34 1 5.9780 6.5752 -1.3387 35 1 5.7276 5.8402 -2.9404 36 1 7.2227 9.1220 -3.6890 37 1 5.7269 -1.1055 1.0245 38 1 5.4133 -1.9378 -0.5172 39 1 6.0385 -0.2713 -0.5167 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292790248.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:52 Heat of formation + Delta-G solvation = -30.324010 kcal Electronic energy + Delta-G solvation = -19292.187721 eV Core-core repulsion = 16325.551251 eV Total energy + Delta-G solvation = -2966.636470 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.87793 -38.32704 -34.79801 -33.41726 -33.25359 -31.17208 -29.78582 -29.61391 -25.79415 -25.13362 -23.83475 -21.81281 -21.13783 -19.56100 -18.38259 -17.28390 -16.92343 -15.87198 -15.44680 -14.91247 -14.62662 -14.47413 -14.40627 -13.87133 -13.58465 -13.39760 -13.16352 -13.00914 -12.96292 -12.34138 -12.20223 -12.03577 -12.01264 -11.65068 -11.55356 -11.22545 -11.13173 -10.91309 -10.71485 -10.57363 -9.93091 -9.64021 -9.15287 -8.98861 -8.85043 -8.62660 -8.42599 -8.29989 -5.94265 -3.98558 0.78435 1.39019 1.75899 2.48355 3.29412 3.34512 3.40338 3.42939 3.59223 4.48971 4.51702 4.61975 4.88932 5.04168 5.11512 5.23286 5.23884 5.30283 5.36504 5.40611 5.44154 5.58049 5.62508 5.73898 5.76458 5.89458 5.98801 6.17028 6.24346 6.26283 6.29173 6.33407 6.82782 6.92269 7.76497 7.89005 7.92318 8.09478 8.40971 8.81630 9.10172 9.64834 11.16675 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027954 B = 0.003239 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.398420 B = 8642.384294 C = 9325.210372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.178 4.178 3 C -0.129 4.129 4 C -0.105 4.105 5 C 0.202 3.798 6 H 0.095 0.905 7 C -0.156 4.156 8 N -0.739 5.739 9 C 0.511 3.489 10 O -0.534 6.534 11 C -0.130 4.130 12 C 0.037 3.963 13 C -0.527 4.527 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.173 4.173 22 C -0.086 4.086 23 S 0.089 5.911 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.139 0.861 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.395 0.605 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.261 0.739 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.840 -21.068 9.449 25.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.295 4.295 3 C -0.159 4.159 4 C -0.117 4.117 5 C 0.095 3.905 6 H 0.113 0.887 7 C -0.214 4.214 8 N -0.394 5.394 9 C 0.300 3.700 10 O -0.410 6.410 11 C -0.170 4.170 12 C 0.000 4.000 13 C -0.565 4.565 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.290 4.290 22 C -0.144 4.144 23 S 0.354 5.646 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.156 0.844 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.230 0.770 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.087 -22.666 9.274 26.486 hybrid contribution -0.656 2.427 -0.281 2.530 sum -10.743 -20.239 8.992 24.615 Atomic orbital electron populations 1.20338 0.87746 1.03120 1.02851 1.24351 0.99849 0.95483 1.09832 1.19802 0.92235 0.99284 1.04612 1.18878 0.94582 0.93943 1.04278 1.19388 0.93176 0.81691 0.96232 0.88714 1.22134 1.01467 1.02368 0.95465 1.46357 1.11392 1.17496 1.64129 1.21558 0.87438 0.85234 0.75772 1.90662 1.15286 1.79841 1.55163 1.21868 1.01839 0.92240 1.01077 1.18895 0.92413 0.92242 0.96475 1.21227 0.94057 1.01341 1.39876 0.92631 1.25025 0.94821 0.98549 0.96007 1.70000 1.04492 1.33998 1.44355 0.86594 0.79279 0.83681 0.78406 1.20688 1.21235 1.19897 1.24127 0.99146 0.95522 1.10206 1.20401 0.89768 1.01402 1.02849 1.84124 0.96409 1.09584 1.74440 0.90658 0.91429 0.90401 0.84381 0.91339 0.92501 0.91937 0.76960 0.90300 0.90277 0.95815 0.95817 0.92971 0.90545 0.91323 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.38 36.01 0.37 -0.19 16 2 C -0.18 -1.71 6.51 -36.00 -0.23 -1.94 16 3 C -0.13 -1.37 9.25 -41.21 -0.38 -1.75 16 4 C -0.10 -1.22 4.99 -106.25 -0.53 -1.75 16 5 C 0.20 2.71 2.45 -69.08 -0.17 2.54 16 6 H 0.10 1.44 6.44 -51.93 -0.33 1.10 16 7 C -0.16 -1.92 9.47 37.16 0.35 -1.57 16 8 N -0.74 -10.80 5.00 -54.93 -0.27 -11.07 16 9 C 0.51 9.95 7.79 -10.99 -0.09 9.86 16 10 O -0.53 -12.58 15.65 5.55 0.09 -12.50 16 11 C -0.13 -2.67 5.64 -27.88 -0.16 -2.83 16 12 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 13 C -0.53 -15.05 9.11 -34.44 -0.31 -15.37 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.60 13.29 55.43 0.74 -26.86 16 17 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 C -0.17 -1.83 6.51 -36.00 -0.23 -2.07 16 22 C -0.09 -0.75 9.80 36.01 0.35 -0.40 16 23 S 0.09 0.85 23.31 -107.50 -2.51 -1.66 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.14 1.28 6.35 -52.48 -0.33 0.95 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.65 7.89 -51.93 -0.41 0.24 16 31 H 0.40 4.71 6.42 -40.82 -0.26 4.44 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 33 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 34 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.76 6.85 -51.93 -0.36 0.41 16 LS Contribution 339.18 15.07 5.11 5.11 Total: -1.00 -33.89 339.18 -8.99 -42.89 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -5.88 Total: 0.32 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -1.24 Total: -12.98 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.46 Total: -37.93 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.09 Total: -12.50 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.51 Total: -1.66 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.89 -8.99 -42.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292790248.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.562 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds