Wall clock time and date at job start Tue Mar 31 2020 05:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33384 * 125.20740 * 2 1 4 4 C 1.38420 * 114.92623 * 180.02562 * 3 2 1 5 5 C 1.50696 * 122.54398 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47437 * 219.97989 * 5 4 3 7 7 C 1.53005 * 109.47143 * 99.97767 * 5 4 3 8 8 N 1.46502 * 109.46872 * 339.98328 * 5 4 3 9 9 C 1.34777 * 119.99870 * 204.99655 * 8 5 4 10 10 O 1.21290 * 119.99982 * 359.97438 * 9 8 5 11 11 C 1.50700 * 120.00083 * 179.97438 * 9 8 5 12 12 C 1.53003 * 109.47181 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47181 * 180.02562 * 12 11 9 14 14 H 1.07994 * 120.00073 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99914 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00269 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00064 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47252 * 89.99985 * 17 15 13 19 19 H 1.48501 * 109.47241 * 210.00518 * 17 15 13 20 20 H 1.48505 * 109.47146 * 330.00280 * 17 15 13 21 21 C 1.33392 * 114.91632 * 0.02562 * 4 3 2 22 22 C 1.50706 * 125.20035 * 179.97438 * 21 4 3 23 23 S 1.75886 * 109.59635 * 0.24519 * 21 4 3 24 24 H 1.09004 * 109.47235 * 89.99741 * 1 2 3 25 25 H 1.09002 * 109.47216 * 209.99824 * 1 2 3 26 26 H 1.08999 * 109.46969 * 329.99579 * 1 2 3 27 27 H 1.08004 * 122.53675 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.47087 * 180.02562 * 7 5 4 29 29 H 1.09005 * 109.46828 * 300.00295 * 7 5 4 30 30 H 1.08992 * 109.46845 * 60.00097 * 7 5 4 31 31 H 0.97003 * 120.00239 * 24.99251 * 8 5 4 32 32 H 1.08996 * 109.47214 * 300.00002 * 11 9 8 33 33 H 1.08998 * 109.47152 * 60.00685 * 11 9 8 34 34 H 1.09002 * 109.47168 * 300.00527 * 12 11 9 35 35 H 1.09004 * 109.46675 * 59.99853 * 12 11 9 36 36 H 0.97001 * 120.00481 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.46953 * 90.00154 * 22 21 4 38 38 H 1.09000 * 109.47318 * 209.99752 * 22 21 4 39 39 H 1.09000 * 109.47161 * 330.00382 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0898 0.0000 4 6 3.6380 0.8428 -0.0006 5 6 4.6624 1.9480 -0.0001 6 1 5.4867 1.6797 -0.6608 7 6 5.1928 2.1512 1.4206 8 7 4.0423 3.1887 -0.4718 9 6 4.8018 4.1512 -1.0316 10 8 5.9987 3.9903 -1.1443 11 6 4.1639 5.4271 -1.5174 12 6 5.2391 6.3430 -2.1057 13 6 4.6013 7.6193 -2.5909 14 1 3.5358 7.7630 -2.4895 15 6 5.3783 8.6039 -3.1635 16 7 6.6760 8.4291 -3.2866 17 14 4.5879 10.1861 -3.7643 18 1 4.5757 11.1825 -2.6633 19 1 5.3649 10.7237 -4.9099 20 1 3.1945 9.9100 -4.1974 21 6 3.9750 -0.4478 -0.0016 22 6 5.3861 -0.9772 -0.0029 23 16 2.5209 -1.4373 -0.0089 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.8670 2.0894 0.0004 28 1 5.9334 2.9510 1.4211 29 1 4.3684 2.4195 2.0813 30 1 5.6541 1.2282 1.7716 31 1 3.0851 3.3175 -0.3814 32 1 3.4254 5.1949 -2.2847 33 1 3.6751 5.9297 -0.6828 34 1 5.9780 6.5752 -1.3387 35 1 5.7276 5.8402 -2.9404 36 1 7.2227 9.1220 -3.6890 37 1 5.7269 -1.1055 1.0245 38 1 5.4133 -1.9378 -0.5172 39 1 6.0385 -0.2713 -0.5167 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292790248.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:51 Heat of formation + Delta-G solvation = -51.323839 kcal Electronic energy + Delta-G solvation = -19293.098342 eV Core-core repulsion = 16325.551251 eV Total energy + Delta-G solvation = -2967.547091 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.12610 -39.52189 -35.99100 -35.49853 -34.15622 -33.04081 -31.09565 -30.28025 -27.71127 -25.98907 -24.94861 -23.44149 -22.24273 -21.08668 -19.30088 -18.81743 -18.10609 -17.56746 -16.71542 -16.50100 -16.25987 -15.70335 -15.41747 -14.90133 -14.55004 -14.46246 -14.21706 -14.12107 -13.89029 -13.80472 -13.62440 -13.22336 -13.08811 -12.88873 -12.80144 -12.49950 -12.44403 -12.36140 -12.02518 -11.90827 -11.64144 -11.57018 -11.29579 -10.71476 -10.56280 -10.16512 -9.36979 -9.23926 -8.17151 -6.31224 0.01205 0.63853 0.98784 1.42642 1.45506 1.56386 1.64404 1.74017 2.25814 2.45705 3.15768 3.67453 3.85218 4.01012 4.16426 4.28190 4.29672 4.36659 4.51000 4.51653 4.56701 4.66545 4.70765 4.76266 4.77034 4.87011 5.01743 5.08170 5.12036 5.20888 5.24823 5.30803 5.49833 5.51532 5.64338 5.64939 5.86473 6.18601 6.59731 6.87216 7.34344 7.39122 8.95522 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027954 B = 0.003239 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.398420 B = 8642.384294 C = 9325.210372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.178 4.178 3 C -0.148 4.148 4 C -0.118 4.118 5 C 0.204 3.796 6 H 0.072 0.928 7 C -0.149 4.149 8 N -0.715 5.715 9 C 0.514 3.486 10 O -0.585 6.585 11 C -0.120 4.120 12 C 0.043 3.957 13 C -0.543 4.543 14 H 0.076 0.924 15 C -0.007 4.007 16 N -0.938 5.938 17 Si 0.974 3.026 18 H -0.271 1.271 19 H -0.286 1.286 20 H -0.255 1.255 21 C -0.183 4.183 22 C -0.088 4.088 23 S 0.111 5.889 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.149 0.851 28 H 0.041 0.959 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.412 0.588 32 H 0.103 0.897 33 H 0.105 0.895 34 H -0.017 1.017 35 H -0.018 1.018 36 H 0.263 0.737 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.925 -21.573 9.995 27.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.295 4.295 3 C -0.177 4.177 4 C -0.130 4.130 5 C 0.097 3.903 6 H 0.090 0.910 7 C -0.208 4.208 8 N -0.369 5.369 9 C 0.302 3.698 10 O -0.465 6.465 11 C -0.159 4.159 12 C 0.005 3.995 13 C -0.581 4.581 14 H 0.094 0.906 15 C -0.205 4.205 16 N -0.578 5.578 17 Si 0.798 3.202 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.179 1.179 21 C -0.301 4.301 22 C -0.146 4.146 23 S 0.376 5.624 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.167 0.833 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.250 0.750 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.001 0.999 35 H 0.000 1.000 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.240 -23.207 9.849 28.475 hybrid contribution 0.296 2.458 -0.426 2.512 sum -12.944 -20.749 9.422 26.208 Atomic orbital electron populations 1.20454 0.85817 1.04261 1.03643 1.24736 1.01208 0.95116 1.08443 1.19919 0.91794 1.00276 1.05735 1.18746 0.94627 0.93546 1.06125 1.19383 0.93260 0.81488 0.96189 0.91002 1.22068 1.01218 1.02418 0.95074 1.46076 1.11922 1.16825 1.62107 1.21323 0.86819 0.85782 0.75864 1.90650 1.17458 1.80820 1.57558 1.21643 1.00031 0.91852 1.02404 1.18683 0.93311 0.93409 0.94096 1.21717 0.95099 1.01731 1.39540 0.90604 1.26143 0.95280 1.02962 0.96099 1.70181 1.06530 1.35562 1.45500 0.85315 0.78819 0.78296 0.77775 1.19681 1.21216 1.17892 1.24406 1.00465 0.95675 1.09511 1.20467 0.88793 1.01623 1.03756 1.84059 0.95439 1.09138 1.73744 0.89929 0.90320 0.89275 0.83320 0.94000 0.91270 0.90009 0.74963 0.87915 0.87695 0.99864 0.99970 0.92872 0.89179 0.90054 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.38 71.24 0.74 -0.16 16 2 C -0.18 -2.97 6.51 24.59 0.16 -2.81 16 3 C -0.15 -2.82 9.25 21.21 0.20 -2.63 16 4 C -0.12 -2.60 4.99 -20.92 -0.10 -2.71 16 5 C 0.20 5.42 2.45 44.25 0.11 5.53 16 6 H 0.07 2.27 6.44 -2.39 -0.02 2.25 16 7 C -0.15 -3.64 9.47 71.98 0.68 -2.96 16 8 N -0.71 -20.46 5.00 -446.08 -2.23 -22.69 16 9 C 0.51 20.32 7.79 87.66 0.68 21.00 16 10 O -0.59 -29.06 15.65 -3.06 -0.05 -29.11 16 11 C -0.12 -4.87 5.64 29.85 0.17 -4.70 16 12 C 0.04 2.41 4.26 29.85 0.13 2.53 16 13 C -0.54 -31.17 9.11 25.60 0.23 -30.93 16 14 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 15 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 16 N -0.94 -59.97 13.29 21.45 0.28 -59.69 16 17 Si 0.97 44.54 29.54 68.60 2.03 46.56 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 19 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 21 C -0.18 -3.64 6.51 24.59 0.16 -3.48 16 22 C -0.09 -1.46 9.80 71.24 0.70 -0.76 16 23 S 0.11 1.86 23.31 -56.49 -1.32 0.55 16 24 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 25 H 0.08 0.68 8.14 -2.39 -0.02 0.67 16 26 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.15 2.38 6.35 -2.91 -0.02 2.36 16 28 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.08 1.65 7.89 -2.39 -0.02 1.63 16 31 H 0.41 9.01 6.42 -92.71 -0.59 8.42 16 32 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 33 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 34 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 35 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 36 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 37 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.07 1.33 6.85 -2.39 -0.02 1.31 16 Total: -1.00 -76.34 339.18 3.48 -72.86 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.45 Total: 13.57 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 4.31 Total: -22.05 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -1.94 Total: -82.38 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.05 Total: -29.11 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -1.32 Total: 0.55 kcal Total: -76.34 3.48 -72.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292790248.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.537 kcal (2) G-P(sol) polarization free energy of solvation -76.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds